BAC Information

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BAC

Clone NameB6Ng01-145D19
Chromosome4 (Build37)
Map Location 66,511,336 - 66,512,096
singlet/doubletsinglet
Overlap genenone
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneLOC100039379, Hmgb1-rs18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145D19.bB6Ng01-145D19.g
ACCDH942699DH942700
length1,156736
definitionDH942699|Mus musculus domesticus DNA, BAC clone: B6Ng01-145D19, 5' end.DH942700|Mus musculus domesticus DNA, BAC clone: B6Ng01-145D19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatacagaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgcttgcgaggatgtggagaaagaggaacactcctccattgttggtg
gattgcaagcttgtacaaccactgaaaatcagtctggcggttactcagaa
aattggacatagtactacaggaggatcccgcaatacctctcctgggcata
tatccagaagatgtcccaaccggtaagaagaacacatactccactatgtt
cttagcagccttatttataatagccagaagctggaaagaacccagatgcc
cctcaacagaggaatggatacagaaaatgtggtacatttacacaatggaa
tactactcagctattaaaaaaaatgaatttatgaaattcctaggcaaatg
gatggacctggagggtatcatcctgagtgaaataacccaatcacaaagga
agtcgcacaatatgtactcactgataagtggatattagcccagaaaccta
ggatacccaagatataagatacaacttgccaaacgcatgaaattcaagaa
gaacgaagaccaaagtgtggacactctaccctttcttagaaatgggaaca
aaacacccatagaaggagttacagagacaaaatttggagctgtgatgaaa
ggatggaccatctagtgattgccatatgcagggatccatcccataattag
cttccaaatgctgacaccattgcatacactagtaagattttgctgaaagg
acccagatatagctctctcttgtgagactatgccggggcctatcaaacac
agaagtggatgatcacagtcagctattgggtgggtcacatggcccttatg
gagagctagagaattacccaggagctaagggaactgcaccctatagtgga
cacaatatgactaacagtacccggagctttttgtcttagctgcatatgta
tcaaagaatgcctagtcgtcatcactgcaagagagtcatgactgcaagtt
aatgcccagtacaggaaacacaggtcaaaggcagtggtgggtgtggggaa
tggggg
gaattctcatgctttgggcataagggtaataggaaagagaaagagaattc
agagagacagagaaaaataaaacaagaatgaagttagtacccacaaaaac
ttaaagtatggtccacatatgtcacaaaagataaaggtattccctacctt
ggctgataattagaattcgatccttttttttttttttttttttttttttt
ttttttttttttttttttttatttggttttttgaaacggggtttttctgt
gtagctctggctgtcctggaactccctttttaaaccaggctggccttgaa
ctcaggaatctgcctgcctctgcctccccagtactgggattaattgtacc
tatgtgggggcaggaaaaatccaactcccccgaattgtactgggaatcct
cttattgctaccagtggactataatctgcacatgtgtgtatgtgtgcacc
tgtgttcatgcctacccactattggaatggatcagggaaagaaagttaaa
gagtagaaaatggtggtgggattgaccagtgaacttactgaacttgggct
tttggacgaggatgctgcccgagccgagagttggtataaacaggagcaca
gatcatatgagaggaaactactgagggcaatgctccgaaagatattggag
ggaagttcctgggatgcttagaacctgactagtgtgtaccgtctggaacc
ctcaacaccttgggccatcagacgcattaataaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_66511336_66512096
seq2: B6Ng01-145D19.g_66_801 (reverse)

seq1  TATTT-TTAATGCTGTCTGATTGCCCAAGGTATGTATGGAGGGTGTACAC  49
      ||||| ||||||| ||||||| |||||||    || | ||||||     |
seq2  TATTTATTAATGC-GTCTGATGGCCCAAG----GTGTTGAGGGT---TCC  42

seq1  AGACGGTACACAGACCTAAGTCAGGTGTCTAAGCATCCCAGGAACTTCCC  99
      ||||||||||||   || |||||||| |||||||||||||||||||||||
seq2  AGACGGTACACA---CT-AGTCAGGT-TCTAAGCATCCCAGGAACTTCCC  87

seq1  TTCCAATATTCTTTTCTGAGCATATGCCCTCAGTTAGTTTTCCTCTTCAT  149
       ||||||||   |||| |||||| ||||||||| ||| ||||||| ||||
seq2  -TCCAATAT--CTTTCGGAGCAT-TGCCCTCAG-TAG-TTTCCTC-TCAT  130

seq1  ATGATCTGTGCTCCTGTTTATACCAAACTCTCGGCTCTGGCAGCATCCTC  199
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  ATGATCTGTGCTCCTGTTTATACC-AACTCTCGGCTCGGGCAGCATCCTC  179

seq1  GTCCAAAAAGCACAAGTTCAGTTAAGTTCACTGGTCACATACCACCACCA  249
      |||| |||||| ||||||||| ||||||||||||||| || |||||||||
seq2  GTCC-AAAAGCCCAAGTTCAG-TAAGTTCACTGGTCA-ATCCCACCACCA  226

seq1  TTTTCTACTCTTTATACTTTCTTTCCCTGATTACATTCCAATAGTGTGTA  299
      |||||||||||||| ||||||||||||||| | ||||||||||||| |||
seq2  TTTTCTACTCTTTA-ACTTTCTTTCCCTGA-TCCATTCCAATAGTGGGTA  274

seq1  GGCATGAACACATGTGCACACATACACACATGTGCAGATTATAGTCCACT  349
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGCATGAACACAGGTGCACACATACACACATGTGCAGATTATAGTCCACT  324

seq1  TGTAGCAATAAGAGGATTCTCAGTACAATTCGTGGGAGTTGGATTTCTCC  399
       |||||||||||||||||| |||||||||||| ||||||||||||| |||
seq2  GGTAGCAATAAGAGGATTCCCAGTACAATTCGGGGGAGTTGGATTTTTCC  374

seq1  TGCCACCACATAGGTACAATTAATCCCAGTACTCGGGAGGCAGAGGCAGG  449
      |||| |||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGCCCCCACATAGGTACAATTAATCCCAGTACTGGGGAGGCAGAGGCAGG  424

seq1  CAGATTCCTGAGTTCAAGGCCAGCCTGGTCTAAAAAGTGAGTTCCAGGAC  499
      ||||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  CAGATTCCTGAGTTCAAGGCCAGCCTGGTTTAAAAAGGGAGTTCCAGGAC  474

seq1  AGCCAGAGCTACACAGAAAAACCCCGTCTCAAAAAACCAAATAAAAAAAA  549
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGCCAGAGCTACACAGAAAAACCCCGTTTCAAAAAACCAAATAAAAAAAA  524

seq1  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGATCGAATTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGATCGAATTC  574

seq1  TAATTATCAGCCAAGGTAGGGAATACCTTTATCTTTTGTGACATATGTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATCAGCCAAGGTAGGGAATACCTTTATCTTTTGTGACATATGTGG  624

seq1  ACCATACTTTAAGTTTTTGTGGGTACTAACTTCATTCTTGTTTTATTTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATACTTTAAGTTTTTGTGGGTACTAACTTCATTCTTGTTTTATTTTT  674

seq1  CTCTGTCTCTCTGAATTCTCTTTCTCTTTCCTATTACCCTTATGCCCAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCTCTCTGAATTCTCTTTCTCTTTCCTATTACCCTTATGCCCAAA  724

seq1  GCATGAGAATTC  761
      ||||||||||||
seq2  GCATGAGAATTC  736