BAC Information

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BAC

Clone NameB6Ng01-145K04
Chromosome4 (Build37)4 (Build37)
Map Location 145,717,423 - 145,718,461146,134,303 - 146,135,585
singlet/doubletsingletsinglet
Overlap geneLOC433790
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433
Downstream geneLOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145K04.bB6Ng01-145K04.g
ACCDH942985DH942986
length1,0401,250
definitionDH942985|Mus musculus domesticus DNA, BAC clone: B6Ng01-145K04, 5' end.DH942986|Mus musculus domesticus DNA, BAC clone: B6Ng01-145K04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(145,717,423 - 145,718,461)(146,134,303 - 146,135,585)
sequence
gaattcaatatatgctgtcactcttaagtttcttttaggttgagttcaca
gattatgctttgaacaagttaaatatggactggagactgcatatctaggc
tcttaggcagatggaaaatttacgtagtacagatattgtaagagtcattt
cttacataaccattttcctaaaaaaaaaaccccacaaagatagcagtata
taattttcatttgcacataatttttattattcagccgggcatggtggtgc
atgcctttaatcccagcactcgggaggcagaggcaggtggatttctgagt
tcgaggccaccctggtctacagagtgagttccaggatcagccaggactat
acagagaaaccctgtctccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaga
tttattattcaaattgttttgttttcctccatgttgggatgaccatatgt
ttgtaaaaaaagacaatattttgatgtattcccaaccatttttgaacata
tgttagaaggctcagagtgaaatgtttatagggtgcaaatctaacaacct
gaccttgatcactatataacaaatgtccatatttcctcccttgaatattt
tgttcccccatctaggtaggactaaagcatccacactttgatcttcttta
ttcttgagctccatgtgtactgtgaattttatcttggttattctgagctg
tggagcagagaatgacagaaaagccatccagacgctgacccacctgggaa
tccatcccatgtacagacatcaaacccagatactaatgtggatgccaaga
agtgcttgctgagaggagcctgatatatctctctcctgagaggctctgcc
aaagcctgacaaatacagaggtggatgcttgagccacccattggactgag
cgtgggttcacgatggaggagctagagataaagacttaaggagctgaagg
ggtttgcaacccataggaagaacaacaacatcaaccaaccagacctccca
ggagcttacaggacgaaaccacatccaaagagtactcatg
gaattcattctgaacatggtgatactattgctgaagaaagttgtcatgac
catgattgtgaggagccgcccttgcagtcaccattacaagatagtgctga
cattcgatgttctaactggtaaacaagtagtctgcgcatgtgctggggta
tttttccattccttctgccctgcctgtcccatggcgtcatctgggctgat
ggtgagcagccaatcagggcaaggcacgtctccaaccgctcttcgtggtc
tataaaagaaccgagtttccggtgctctgggtctcctcctccccagaagc
tgatcatctatctctcgagatgcattaaagctttgctgcagaaggatccg
agtttgtcctgtgtgtgtgttcttgccggcgagattcagagacacaggga
cacatgatatcagcaaatattcagtgctttttatgtatttctttgacctt
atatttctctcatgtcagatatttctcttggcatttaacaggtatatgaa
tgatctctttcaacgccctggcctcagaagtatggattgacaatgagaaa
aagcagattatcaagtaccatggaatgtcagaaaatgaatgagaattgat
gagggaaatattgatttcctaggaacaataaacactaggccagggaataa
tcaagtgcagaaacccaggctctcagtgttccttctaacactttctcagg
aataatcaaatgctgcaccaaattcacaaatttcttctgaaaaatcccac
aaaaaaattgcccagaaaacagtgcagaacacagaaagtaagggaatatg
gtacagccatcacacaaagctgaccttacctgggtccaaagcaaatgacc
acgaaaacatgcacacagaaaataataacagtatgggtgctacagggcaa
cttttaaaagtttctctctaatagatgcagaaagtaaactcaacttgatt
tcatgacagagatcaaaactgcagtacaaatcaacactcaaggcataact
atgtataatcagtggggagaaagctccctgatagatatatatcaatatat
tctatgaaagcctaggcaaaatatcaagtggatcactattgaagctctga
agaatgtggaaagagaactactgggtctattgaggaataataggccaaac
ggtaacttatacttacacacttgagagcgcgttccatcactcatcgaaga
cgacagagattcaagcctccactatctcattgcccaggcagcaatgcttg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145717423_145718461
seq2: B6Ng01-145K04.b_58_1089 (reverse)

seq1  CATGAGTACTCTTTGGATGGTGGTTTCGTCCCTGTAAGCTCTGGGGGGGT  50
      |||||||||||||||||| |||||||||| |||||||||||  ||| |||
seq2  CATGAGTACTCTTTGGAT-GTGGTTTCGT-CCTGTAAGCTCCTGGGAGGT  48

seq1  CTGGTTGGTTGATGTTGTTGTTCTTCCTATGGGTTGCAAACCCCTTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGGTTGATGTTGTTGTTCTTCCTATGGGTTGCAAACCCCTTCAGC  98

seq1  TCCTTAAGTC-TTGTCTCTAGCTCCTCCATCGTGAACCCACGCTCAGTCC  149
      |||||||||| || ||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAGTCTTTATCTCTAGCTCCTCCATCGTGAACCCACGCTCAGTCC  148

seq1  AATGGGTGGCTTCAAGCATCCACCTCTGTATTTGTCAGGCTTTGGCAGAG  199
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTGGC-TCAAGCATCCACCTCTGTATTTGTCAGGCTTTGGCAGAG  197

seq1  CCTCTCAGGAGAGAGATATATCAGGCTCCTCTCAGCAAGCACTTCTTGGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAGGAGAGAGATATATCAGGCTCCTCTCAGCAAGCACTTCTTGGC  247

seq1  ATCCACATTAGTATCTGGGTTTGATGTCTGTATATGGGATGGATTCCCAG  299
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATCCACATTAGTATCTGGGTTTGATGTCTGTACATGGGATGGATTCCCAG  297

seq1  GTGGGTCAGTGTCTGGATGGCTTTTCTGTCATTCTCTGCTCCACAGCTCA  349
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCAGCGTCTGGATGGCTTTTCTGTCATTCTCTGCTCCACAGCTCA  347

seq1  GAGTAACTAAGATATAATTTACAGTACACATGAAGCTCAAGAGTAAGGAA  399
      || |||| |||||| |||| |||||||||||| ||||||||| ||| |||
seq2  GAATAACCAAGATAAAATTCACAGTACACATGGAGCTCAAGAATAAAGAA  397

seq1  GATCAAAGTGTGGATGCTTTAGTCCTACCTAGATTGGGGAACAAAATATT  449
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GATCAAAGTGTGGATGCTTTAGTCCTACCTAGATGGGGGAACAAAATATT  447

seq1  CAAGGGAGGAAATATGGACATTTGTTATATAGTGATCAAGGTCAGGTTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAGGAAATATGGACATTTGTTATATAGTGATCAAGGTCAGGTTGT  497

seq1  TAGATTTGCACCCTATAAACATTTCACTCTGAGCCTTCTAACATATGTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTGCACCCTATAAACATTTCACTCTGAGCCTTCTAACATATGTTC  547

seq1  AAAAATGGTTGGGAATACATCAAAATATTGTCTTTTTTTACAAACATATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGTTGGGAATACATCAAAATATTGTCTTTTTTTACAAACATATG  597

seq1  GTCATCCCAACATGGAGGAAAACAAAACAATTTGAATAATAAATCTTTTT  649
      |||||||||||||||||||||||||||||||||||||||||||||   ||
seq2  GTCATCCCAACATGGAGGAAAACAAAACAATTTGAATAATAAATC---TT  644

seq1  TTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGACAGGGTTTCTCTGTATAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGACAGGGTTTCTCTGTATAG  694

seq1  TCCTGGCTGATCCTGGAACTCACTCTGTAGACCAGGGTGGCCTCGAACTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCTGATCCTGGAACTCACTCTGTAGACCAGGGTGGCCTCGAACTC  744

seq1  AGAAATCTACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGCAC  799
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGCAC  794

seq1  CACCACGCCCGGCTGAATAATAAAAATTATGTGCAAATGAAAATTATATA  849
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGCCCGGCTGAATAATAAAAATTATGTGCAAATGAAAATTATATA  844

seq1  CTGCTATCTTTGTGGGTTTTTTTTTTTTTAGGAAAATGGTTATGTAAGAA  899
      ||||||||||||||||   |||||||||||||||||||||||||||||||
seq2  CTGCTATCTTTGTGGG--GTTTTTTTTTTAGGAAAATGGTTATGTAAGAA  892

seq1  ACGACTCTTACAATATCTGTACTACGTAAATTTTCCATCTGCCTAAGAGC  949
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCTTACAATATCTGTACTACGTAAATTTTCCATCTGCCTAAGAGC  942

seq1  CTAGATATGCAGTCTCCAGTCCATATTTAACTTGTTCAAAGCATAATCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATATGCAGTCTCCAGTCCATATTTAACTTGTTCAAAGCATAATCTG  992

seq1  TGAACTCAACCTAAAAGAAACTTAAGAATGACAGCATATA  1039
      ||||||||||||||||||||||||||| ||||||||||||
seq2  TGAACTCAACCTAAAAGAAACTTAAGAGTGACAGCATATA  1032

seq1: chr4_146134303_146135585
seq2: B6Ng01-145K04.g_68_1317 (reverse)

seq1  CAAGCATTGCTGCACTGAG--ATAAGTTAGTGTGGAGGCTTTGCACATCC  48
      ||||||||||||| ||| |  || || ||  ||||||||||     ||| 
seq2  CAAGCATTGCTGC-CTGGGCAATGAGATA--GTGGAGGCTT---GAATCT  44

seq1  TTGTCTGCCTTCTGAGTAGAGTAGAATGAT-GACAGCTGTCTTCAGTGTG  97
       |||| | ||||        |  || |||| ||  ||  |||  ||||||
seq2  CTGTC-GTCTTC--------GATGAGTGATGGAACGCGCTCTCAAGTGTG  85

seq1  TGTAGTGATAGGTTTACGATGTTGGCTATTA-TCCTCATTAGACTCAGTA  146
      |  ||| ||| | ||||  | | | |||||| |||||| ||||| |||||
seq2  T-AAGT-ATAAG-TTACCGTTTGGCCTATTATTCCTCAATAGACCCAGTA  132

seq1  ATGTTCCTTCTGTTCCACATTCTTCAGAGCTTTCATAGTGATCCACTGTG  196
        ||||  ||| ||||||||||||||||||||  ||||||||||||| ||
seq2  --GTTC--TCT-TTCCACATTCTTCAGAGCTTCAATAGTGATCCACT-TG  176

seq1  ATATTTTGCCCTAGGCCTTTCATAG-ATATATTGATATATATCTATCAGT  245
      |||||||| |||||| ||||||||| ||||||||||||||||||||||| 
seq2  ATATTTTG-CCTAGG-CTTTCATAGAATATATTGATATATATCTATCAGG  224

seq1  GAGCTTTCT-CCCACTGATGATACATAGTTTATGTCTTGAGTTGTTTGGT  294
      ||||||||| ||||||||| |||||||| ||||| |||||||   ||| |
seq2  GAGCTTTCTCCCCACTGATTATACATAG-TTATGCCTTGAGT--GTTGAT  271

seq1  TTGTACTTGCTAAAACAGTTTTGAATCTCTGTCATGAAATCAAGTTGAGT  344
      |||||||        |||||||| ||||||||||||||||||||||||||
seq2  TTGTACT-------GCAGTTTTG-ATCTCTGTCATGAAATCAAGTTGAGT  313

seq1  TTACTTTCTGCATCTATTAGAGAGAAACTTTTTAAAAGTTGCCCTGTAGC  394
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTACTTTCTGCATCTATTAGAGAGAAAC-TTTTAAAAGTTGCCCTGTAGC  362

seq1  ACCCATACTTTTATTATTTTCTGTGTGCATGTTTTTGTGGTCATTTGCTT  444
      ||||||||| ||||||||||||||||||||||||| |||||||||||| |
seq2  ACCCATACTGTTATTATTTTCTGTGTGCATGTTTTCGTGGTCATTTGC-T  411

seq1  TTGGACCCAGGTAAGGTCAGCTTTGTGTGATGGCTGTACCATATTCCCTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACCCAGGTAAGGTCAGCTTTGTGTGATGGCTGTACCATATTCCCTT  461

seq1  ACTTTCTGTGTTCTGCACTGTTTTCTGGGCATTTTTTTTGTGGGATTTTT  544
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACTTTCTGTGTTCTGCACTGTTTTCTGGGCAATTTTTTTGTGGGATTTTT  511

seq1  CAGAAGAAATTTGTGAATTTGGTGCAGCATTTGATTATTCCTGAGAAAGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAAATTTGTGAATTTGGTGCAGCATTTGATTATTCCTGAGAAAGT  561

seq1  GTTAGAAGGAACACTGAGGGTCTGGGTTTCTGCACTTGATTATTCCCTGG  644
      |||||||||||||||||| | |||||||||||||||||||||||||||||
seq2  GTTAGAAGGAACACTGAGAGCCTGGGTTTCTGCACTTGATTATTCCCTGG  611

seq1  CCTAGTGTTTATTGTTCCTAGGAAATCAATATTTCCCTCGTCAATTCTCA  694
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCTAGTGTTTATTGTTCCTAGGAAATCAATATTTCCCTCATCAATTCTCA  661

seq1  TTCATTTTCTGACATTCCATGGTACTTGATAATCTGCTTTTTCTCATTGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTCTGACATTCCATGGTACTTGATAATCTGCTTTTTCTCATTGT  711

seq1  CAATCCATACTTCTGAGGCCAGGGCGTTGAAAGAGATCATTCATATACCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCATACTTCTGAGGCCAGGGCGTTGAAAGAGATCATTCATATACCT  761

seq1  GTTAAATGCCAAGAGAAATATCTGACATGAGAGAAATATAAGGTCAAAGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATGCCAAGAGAAATATCTGACATGAGAGAAATATAAGGTCAAAGA  811

seq1  AATACATAAAAAGCACTGAATATTTGCTGATATCATGTGTCCCTGTGTCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATAAAAAGCACTGAATATTTGCTGATATCATGTGTCCCTGTGTCT  861

seq1  CTGAATCTTGCCGGCAAGAACACACACACAGGACAAACTCGGATCCTTCT  944
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCTCGCCGGCAAGAACACACACACAGGACAAACTCGGATCCTTCT  911

seq1  GCAGCAAAGCTTTAATGCATCTCGAGAGATAGATGATCAGCTTCTGGGGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAAAGCTTTAATGCATCTCGAGAGATAGATGATCAGCTTCTGGGGA  961

seq1  GGAGGAGACCCAGAGCACCGGAAAATCGGTCCTTTTATAGACCACGAAGA  1044
      |||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  GGAGGAGACCCAGAGCACCGGAAACTCGGTTCTTTTATAGACCACGAAGA  1011

seq1  GCGGTTGGAGACGTGCCTTGCCCTGATTGGCTGCTCACCATCAGCCCAGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTTGGAGACGTGCCTTGCCCTGATTGGCTGCTCACCATCAGCCCAGA  1061

seq1  TGACGCCATGGGACAGGCAGGGCACAAGGAATGGAAAAATACCCCAGCAC  1144
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGACGCCATGGGACAGGCAGGGCAGAAGGAATGGAAAAATACCCCAGCAC  1111

seq1  ATGCGCAGACTACTTGTTTACCAGTTAGAACACCGAATGTCAGCACTATC  1194
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATGCGCAGACTACTTGTTTACCAGTTAGAACATCGAATGTCAGCACTATC  1161

seq1  TTGTAATGGTGACTGCAAGGGCGGCTCCTCACAATCATGGTCATGACAAC  1244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATGGTGACTGCAAGGGCGGCTCCTCACAATCATGGTCATGACAAC  1211

seq1  TTTCTTCAGCAATAGTATCACCATGTTCAGAATGAATTC  1283
      |||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCAGCAATAGTATCACCATGTTCAGAATGAATTC  1250