BAC Information

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BAC

Clone NameB6Ng01-145O04
Chromosome4 (Build37)
Map Location 29,572,141 - 29,752,002
singlet/doubletdoublet
Overlap genenone
Upstream geneEpha7, LOC100040907, LOC100040811
Downstream geneLOC665185, LOC619906
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-145O04.bB6Ng01-145O04.g
ACCDH943170DH943171
length8851,094
definitionDH943170|Mus musculus domesticus DNA, BAC clone: B6Ng01-145O04, 5' end.DH943171|Mus musculus domesticus DNA, BAC clone: B6Ng01-145O04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,751,483 - 29,752,002)(29,572,141 - 29,573,245)
sequence
gaattctcaaaaagctcaaggtaaatctcgccatatgacacagctctgct
gctctttgcatgtgtacaaagtagtcaacctcctcctctctctctctctt
ttatcagccatgtccattactgctctattcaccacagcaaccaaatggaa
acaacctaaatgtcctggaagtggaaaatagtagtaaaagtgatattgat
atatatatatatatatatatatataggtgtatactatcctgcatgaaaaa
attaaaccatgaacattttggatggaactagaaacgtttatatggcatga
aacctagacctaaaaagatacattttggtagttcactcttattttaagtc
ttctacctccagatcttcatgtgtgagtacatagcctatgcctactacag
aaataggaaagtaaaatagtacaacttttaggatagtggagttggggaaa
aatggaggggatagtcgggtacaagtgatctgatataggaaatcagaaaa
gaaagctcttaaggaaagaagaatactagtaggaatgtgtgtaaaataac
aatatggcaaatattaaaggatggtatagttttcagtttttggagtatca
gtggtttctttcctctcaaacagatttctattaaaaattaaaaaagtcag
aaacagagggcacagacataagtggactttttctttcattaaaaagtatt
cttaagtgtaatttatgagaaatgttgtaggtttttggccccctcccctg
cttcggggaatttaaccttcattcaaattcctttcattggtaaaaatgga
ttttccctgttaatatagagaatgaaatacgtgctgcttagcaaggaaag
gacaaagttaagggctaaaccttctatgctcagtc
gaattctttgcaggggtggaatgtaaagcccctcagtagggagttcccat
agagctgtctgggttaacagcagggtgcctcaggagggttccagatcaca
atagtaactagcattgggtagcatacagatgtacagttctatgcacattc
atttcttcctctgttatgaactttaaatattcatggtttagataaacttt
gaaatataacttaattagaaacacttcaatctatgcttggtataagattg
ctgacatgaagccaattttgggataacattgatccttaaaacttgctgaa
agtctttaaattctgggggaagtggatgggccttctgatgcccagccagt
cttgtgagaacagtgtcgctttaaataaggaaatgtcaaatcatgctctt
atgagaaacagctgtggagatccacagtgttagtttggcatagtctacta
agtaagtagtagagctataactcaaccgtgtgtagtcttagtgaagcaaa
gacttctttatgaggaaataagccagttctttagtgttgtagctcctgcc
ttgagaacaacaaggctaagaaccctagatcattggctgaagattgatac
attaatttaaaatatcatttataaaaagaaggagtcagccacatgttagg
gttgtttgtgtatgagcatacactggtttgaggtatgctcttacagcagt
gataaaaataaagcaaaacaaaaatcaaaactttaataaaactaacctca
atgtcatgaaacccatcacctctgccaataataaattagctaccattatt
tatctcaatttatgaaagtttttttttcaaatcttatttgattagtctgg
atgtgagccagactcaaccttttattcctttgctgcattttgcgctcatc
tcttggcttctgctctagctataaatcaatttgttcatagctgagtctca
gtcatgttttttttttttcacttgggttttttagggacaattcatacaat
tttttgttttggaaaaaagatgttttctttattttataaggtatgatcaa
tctttctatgattctgaattacactatacttctatcttcgaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_29751483_29752002
seq2: B6Ng01-145O04.b_407_930 (reverse)

seq1  GACTGAGCATAGAAGGTTTAGCCCTTGACCTTTGTCCTTCCTTTGCTAAG  50
      |||||||||||||||||||||||||| | |||||||||| | ||||||||
seq2  GACTGAGCATAGAAGGTTTAGCCCTT-AACTTTGTCCTTTCCTTGCTAAG  49

seq1  CTGCACGTATTTCATTTCTCTATATTAACAGGGAAAATCAATTTTTACCA  100
      | |||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  CAGCACGTATTTCA-TTCTCTATATTAACAGGGAAAATCCATTTTTACCA  98

seq1  ATGAAAGGAATTTGACTGAAGGTTAAATTCCCCGAAGCAGGGGAGGGGGC  150
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGAAAGGAATTTGAATGAAGGTTAAATTCCCCGAAGCAGGGGAGGGGGC  148

seq1  C-AAAACCTACAACATTTCTCATAAATTACACTTAAGAATACTTTTTAAT  199
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACCTACAACATTTCTCATAAATTACACTTAAGAATACTTTTTAAT  198

seq1  GAA--GAAAAGTCCACTTATGTCTGTG-CCTCTGTTTCTGACTTTTTTAA  246
      |||   ||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAAAGAAAAAGTCCACTTATGTCTGTGCCCTCTGTTTCTGACTTTTTTAA  248

seq1  -TTTTAATAGAAATCTGTTTGAGAGGAAAGAAACCACTGATACTCC-AAA  294
       ||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTTTAATAGAAATCTGTTTGAGAGGAAAGAAACCACTGATACTCCAAAA  298

seq1  ACTGAAAACTATACCATCCTTTAATATTTGCCATATTGTTATTTTACACA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAACTATACCATCCTTTAATATTTGCCATATTGTTATTTTACACA  348

seq1  CATTCCTACTAGTATTCTTCTTTCCTTAAGAGCTTTCTTTTCTGATTTCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTACTAGTATTCTTCTTTCCTTAAGAGCTTTCTTTTCTGATTTCC  398

seq1  TATATCAGATCACTTGTACCCGACTATCCCCTCCATTTTTCCCCAACTCC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAGATCACTTGTACCCGACTATCCCCTCCATTTTTCCCCAACTCC  448

seq1  ACTATCCTAAAAGTTGTACTATTTTACTTTCCTATTTCTGTAGTAGGCAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCTAAAAGTTGTACTATTTTACTTTCCTATTTCTGTAGTAGGCAT  498

seq1  AGGCTATGTACTCACACATGAAGATC  520
      ||||||||||||||||||||||||||
seq2  AGGCTATGTACTCACACATGAAGATC  524

seq1: chr4_29572141_29573245
seq2: B6Ng01-145O04.g_71_1164

seq1  GAATTCTTTGCAGGGGTGGAATGTAAAGCCCCTCAGTAGGGAGTTCCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCAGGGGTGGAATGTAAAGCCCCTCAGTAGGGAGTTCCCAT  50

seq1  AGAGCTGTCTGGGTTAACAGCAGGGTGCCTCAGGAGGGTTCCAGATCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGTCTGGGTTAACAGCAGGGTGCCTCAGGAGGGTTCCAGATCACA  100

seq1  ATAGTAACTAGCATTGGGTAGCATACAGATGTACAGTTCTATGCACATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAACTAGCATTGGGTAGCATACAGATGTACAGTTCTATGCACATTC  150

seq1  ATTTCTTCCTCTGTTATGAACTTTAAATATTCATGGTTTAGATAAACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCCTCTGTTATGAACTTTAAATATTCATGGTTTAGATAAACTTT  200

seq1  GAAATATAACTTAATTAGAAACACTTCAATCTATGCTTGGTATAAGATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATAACTTAATTAGAAACACTTCAATCTATGCTTGGTATAAGATTG  250

seq1  CTGACATGAAGCCAATTTTGGGATAACATTGATCCTTAAAACTTGCTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATGAAGCCAATTTTGGGATAACATTGATCCTTAAAACTTGCTGAA  300

seq1  AGTCTTTAAATTCTGGGGGAAGTGGATGGGCCTTCTGATGCCCAGCCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTAAATTCTGGGGGAAGTGGATGGGCCTTCTGATGCCCAGCCAGT  350

seq1  CTTGTGAGAACAGTGTCGCTTTAAATAAGGAAATGTCAAATCATGCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGAGAACAGTGTCGCTTTAAATAAGGAAATGTCAAATCATGCTCTT  400

seq1  ATGAGAAACAGCTGTGGAGATCCACAGTGTTAGTTTGGCATAGTCTACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAACAGCTGTGGAGATCCACAGTGTTAGTTTGGCATAGTCTACTA  450

seq1  AGTAAGTAGTAGAGCTATAACTCAACCGTGTGTAGTCTTAGTGAAGCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTAGTAGAGCTATAACTCAACCGTGTGTAGTCTTAGTGAAGCAAA  500

seq1  GACTTCTTTATGAGGAAATAAGCCAGTTCTTTAGTGTTGTAGCTCCTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTTTATGAGGAAATAAGCCAGTTCTTTAGTGTTGTAGCTCCTGCC  550

seq1  TTGAGAACAACAAGGCTAAGAACCCTAGATCATTGGCTGAAGATTGATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAACAACAAGGCTAAGAACCCTAGATCATTGGCTGAAGATTGATAC  600

seq1  ATTAATTTAAAATATCATTTATAAAAAGAAGGAGTCAGCCACATGTTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTAAAATATCATTTATAAAAAGAAGGAGTCAGCCACATGTTAGG  650

seq1  GTTGTTTGTGTATGAGCATACACTGGTTTGAGGTATGCTCTTACAGCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTGTGTATGAGCATACACTGGTTTGAGGTATGCTCTTACAGCAGT  700

seq1  GATAAAAATAAAGCAAAACAAAAATCAAAACTTTAATAAAACTAACCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAATAAAGCAAAACAAAAATCAAAACTTTAATAAAACTAACCTCA  750

seq1  ATGTCATGAAACCCATCACCTCTGCCAATAATAAATTAGCTACCATTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATGAAACCCATCACCTCTGCCAATAATAAATTAGCTACCATTATT  800

seq1  TATCTCAATTTATGAAAGTTTTTTTTTCAAATCTTATTTGATTAGTCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAATTTATGAAAGTTTTTTTTTCAAATCTTATTTGATTAGTCTGG  850

seq1  ATGTGAGCCAGACTCAACCTTTTATTCCTTTGCTGCATTTTGCGCTCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGCCAGACTCAACCTTTTATTCCTTTGCTGCATTTTGCGCTCATC  900

seq1  TCTTGGCTTCTGCTCTAGCTATAAATCAATTTTGTTCATAGCTGAGTCTC  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCTTGGCTTCTGCTCTAGCTATAAATCAA-TTTGTTCATAGCTGAGTCTC  949

seq1  AGTCATGTTTTTTTTTTTTTCACTTGGGTATTTTTAGGGACAAATACATA  1000
      ||||||| ||||||||||||||||||||| ||||||||||| ||| ||||
seq2  AGTCATG-TTTTTTTTTTTTCACTTGGGT-TTTTTAGGGAC-AATTCATA  996

seq1  CAAATCTTTGTCTTTGGAAAAAAGATGTTTTCTTTATTTATTAAGGTATG  1050
      ||| | ||||| |||||||||||||||||||||||||||  |||||||||
seq2  CAATTTTTTGT-TTTGGAAAAAAGATGTTTTCTTTATTTTATAAGGTATG  1045

seq1  ATCAATCTTTCTTATGATTCTGAAATTTACCACTAATACTTCTAATCTTC  1100
      ||||||||||| ||||||||||||  ||| |||| |||||||| ||||||
seq2  ATCAATCTTTC-TATGATTCTGAA--TTA-CACT-ATACTTCT-ATCTTC  1089

seq1  GAGGT  1105
      |||||
seq2  GAGGT  1094