BAC Information

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BAC

Clone NameB6Ng01-146C01
Chromosome4 (Build37)4 (Build37)
Map Location 116,330,951 - 116,331,662142,920,931 - 142,921,375
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4
Downstream genePrdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146C01.bB6Ng01-146C01.g
ACCDH943352DH943353
length725238
definitionDH943352|Mus musculus domesticus DNA, BAC clone: B6Ng01-146C01, 5' end.DH943353|Mus musculus domesticus DNA, BAC clone: B6Ng01-146C01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(116,330,951 - 116,331,662)(142,920,931 - 142,921,375)
sequence
gaattcagagaggttaagacctgctaaacactgtatgtggttttgggttt
cgacagagtcaccctaacctggatctgaaaatcccaacaagcagacagaa
actcttgtaaccagaggatgaagcttgagggagtgggagagggcagaata
aaaaccaggatcctgagaggagctgccaccacatgatgctttctggattg
caaggaggtccagtggggaatggttttgtgtactgtgtattcagatgctg
atttttgtgcctggagatctggctgccgtacagatgttggcatggtcatt
attattgaagcttctcctgtctcagtgttgtgtaaaaattgttctcccat
cacctctggttggttaataaaatgctgatcagactggagagatggttcag
cagttaagagcactgaatgctcttatgaaagtcctgagttcaatttccag
caaccacatggtggctcacaaccatctgtaatgggatctgatgccctctt
ctggtgtgtttaaagacagctacagtgtactcatataaataaaataaacc
tttttgttttgttttgttttgttttgttttttgtttttcgagacagggtt
tctctgtatagccctggctgtcctggaactcacttttgtagaccaggctg
gcatcgaaaactcagaaatcccgcctgcctctgcctcccaagtgctggga
ttaaagggcatgtgccaccaagccc
ttgggtctgagatccaaggagaagaagtgagagtgggggagccagggatg
gtggtgcatgcctttagtcccataaagcagacataggttctgagttcaag
gccagcctggtctacagagtgagttctgggaaagccaagtctgttacaca
gagaaatcctgtctcaaaacattacagaagaagaagcagcagcaacagca
gcagcagcaggaggaggaggaagaggaggaggaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_116330951_116331662
seq2: B6Ng01-146C01.b_43_758

seq1  GAATTCAGAGAGGTTAAGACCTGCTAAACACTGTATGTGGTTTTGGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAGGTTAAGACCTGCTAAACACTGTATGTGGTTTTGGGTTT  50

seq1  CGACAGAGTCACCCTAACCTGGATCTGAAAATCCCAACAAGCAGACAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAGAGTCACCCTAACCTGGATCTGAAAATCCCAACAAGCAGACAGAA  100

seq1  ACTCTTGTAACCAGAGGATGAAGCTTGAGGGAGTGGGAGAGGGCAGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGTAACCAGAGGATGAAGCTTGAGGGAGTGGGAGAGGGCAGAATA  150

seq1  AAAACCAGGATCCTGAGAGGAGCTGCCACCACATGATGCTTTCTGGATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAGGATCCTGAGAGGAGCTGCCACCACATGATGCTTTCTGGATTG  200

seq1  CAAGGAGGTCCAGTGGGGAATGGTTTTGTGTACTGTGTATTCAGATGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGGTCCAGTGGGGAATGGTTTTGTGTACTGTGTATTCAGATGCTG  250

seq1  ATTTTTGTGCCTGGAGATCTGGCTGCCGTACAGATGTTGGCATGGTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTGCCTGGAGATCTGGCTGCCGTACAGATGTTGGCATGGTCATT  300

seq1  ATTATTGAAGCTTCTCCTGTCTCAGTGTTGTGTAAAAATTGTTCTCCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGAAGCTTCTCCTGTCTCAGTGTTGTGTAAAAATTGTTCTCCCAT  350

seq1  CACCTCTGGTTGGTTAATAAAATGCTGATCAGACTGGAGAGATGGTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGGTTGGTTAATAAAATGCTGATCAGACTGGAGAGATGGTTCAG  400

seq1  CAGTTAAGAGCACTGAATGCTCTTATGAAAGTCCTGAGTTCAATTTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAGAGCACTGAATGCTCTTATGAAAGTCCTGAGTTCAATTTCCAG  450

seq1  CAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTT  500

seq1  CTGGTGTGTTTAAAGACAGCTACAGTGTACTCATATAAATAAAATAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGTTTAAAGACAGCTACAGTGTACTCATATAAATAAAATAAACC  550

seq1  TTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTGTTTTTCGAGACAGGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTGTTTTTCGAGACAGGGTT  600

seq1  TCTCTGTATAGCCCTGGCTGTCCTGGAACTCAC-TTTGTAGACCAGGCTG  649
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTTGTAGACCAGGCTG  650

seq1  GCATCG-AAACTCAGAAAT-CCGCCTGCCTCTGCCTCCCAAGTGCTGGGA  697
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  GCATCGAAAACTCAGAAATCCCGCCTGCCTCTGCCTCCCAAGTGCTGGGA  700

seq1  TTAAA-GGCATGTGCC  712
      ||||| ||||||||||
seq2  TTAAAGGGCATGTGCC  716

seq1: chr4_142920931_142921375
seq2: B6Ng01-146C01.g_159_309 (reverse)

seq1  CCTCCTCCTCCTCCTCTTCCTTCTTGTAGAGAAACACCACCACCAACAAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTAAGGATGATTCTGAGACAGAATTCAAATATTTCTTTCTTTCCTTTTCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTT  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTTCCTTTT  200
                                                        
seq2  --------------------------------------------------  0

seq1  CCTTTTCCTTTTCCTTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTT  250
                                                        
seq2  --------------------------------------------------  0

seq1  CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTC  300
                                                       |
seq2  -------------------------------------------------C  1

seq1  TTTCT-TTCTTTCT-TTCTTTCT-TTCTTTCT--TTCTTTCTTTCCTTCT  345
       | ||  || | || ||| | ||  || | ||  | ||    || || | 
seq2  CTCCTCCTCCTCCTCTTCCTCCTCCTCCTGCTGCTGCTGCTGTTGCTGC-  50

seq1  TTCCTTCTTTCTTTCTTTCTTTTTTGAGACAGGGTTTCTCTGTGT---AG  392
       | |||| |||||   |  | |||||||||||| |||||||||||   ||
seq2  -TGCTTC-TTCTTCTGTAATGTTTTGAGACAGGATTTCTCTGTGTAACAG  98

seq1  CCCTGGCTATCCCGGAACTCACTCTGTAGACCAGGCTAGCCTTGAACTTA  442
       | ||||| |||| ||||||||||||||||||||||| |||||||||| |
seq2  ACTTGGCTTTCCCAGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCA  148

seq1  GAA  445
      |||
seq2  GAA  151