BAC Information

Click to search

BAC

Clone NameB6Ng01-146L24
Chromosome4 (Build37)
Map Location 53,676,085 - 53,783,117
singlet/doubletdoublet
Overlap geneLOC666483, Fcmd
Upstream geneLOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1, Fsd1l
Downstream geneTal2, LOC435784, Tmem38b, LOC670124, LOC100041280, LOC666901, LOC100041303
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146L24.bB6Ng01-146L24.g
ACCDH943809DH943810
length1311,048
definitionDH943809|Mus musculus domesticus DNA, BAC clone: B6Ng01-146L24, 5' end.DH943810|Mus musculus domesticus DNA, BAC clone: B6Ng01-146L24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,782,987 - 53,783,117)(53,676,085 - 53,677,115)
sequence
ctactatatatgttgtttttacaaactcatagtatttaatactcttcagg
ataaaatctaaagaaataatcttatctccatttttaggaggcaggttttt
agttttgtgtgtgtgtgtgtgtgtgtgtgtg
gaattctcccaataatctgagcctgagtaaccagccgggcactccaaggg
atgatgatgaaatggggggggaaatgtcttaaatccttttcagagtgaca
gttactcccccagcatgaccatgagtgtgtgatccattgccgcgtctctc
atgaaaaccatcgtaagtcagcccatcacagaactactacggaagaaaac
tacttgtcgtgtacagttagacaaaggaatctcagacaaccagactacct
tttagttcctgctctctcccctattttgagaataaagcgggtccaattgt
gattcaggcaactgtacagagtagcacattagcattgcccccaactgaac
tgcgatgactatctgtgtgtatgtgtggggaagagagtgcgccgtatatg
cagatctgtatgcacatatacgcatacatgcattgacccacaggacattg
taagatagtatcacatgacatcttaagtagaagtaagtaaggacttttat
gccatccttttcttcacgtttacactttaattattaaaggttgctcctgc
ccttccccaactgtttgtgctgtgtacatcactgctttatataagttgtt
ttttaaggtgaactcagatgttatggttttgtaaatgtctgcaatcatgg
ataggaataaaattgcttatttgaaaaaaaaccaaaaaataaaaaaattg
agtattttgttgttttgttttcagtgcaggtctcattcactatggttgtt
catgccataaactgaaggttcttcctgcctttggccttcaagtcctggga
cgatcagatgaactacattgctagggctctgtagtatttaatttaagtaa
atccagctttacacatatctttaatgatcatgactttggtgtacctaaaa
gctgtcaccaaaccccaagttatttaagctgttctgtgatatcttcttag
gaggtttatactttcattatcttccttttaggtctataattccattctga
attcatttttttgtgaaagaatgttaaggtctggtgtcttaattgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_53782987_53783117
seq2: B6Ng01-146L24.b_50_180 (reverse)

seq1  CACACACACACACACACACACACACAAAACTAAAAACCTGCCTCCTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACAAAACTAAAAACCTGCCTCCTAAAA  50

seq1  ATGGAGATAAGATTATTTCTTTAGATTTTATCCTGAAGAGTATTAAATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGATAAGATTATTTCTTTAGATTTTATCCTGAAGAGTATTAAATAC  100

seq1  TATGAGTTTGTAAAAACAACATATATAGTAG  131
      |||||||||||||||||||||||||||||||
seq2  TATGAGTTTGTAAAAACAACATATATAGTAG  131

seq1: chr4_53676085_53677115
seq2: B6Ng01-146L24.g_69_1116

seq1  GAATTCTCCCAATAATCTGAGCCTGAGTAACCAGCCGGGCACTCCAAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCAATAATCTGAGCCTGAGTAACCAGCCGGGCACTCCAAGGG  50

seq1  ATGATGATGAAATGGGGGGGGAAATGTCTTAAATCCTTTTCAGAGTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGATGAAATGGGGGGGGAAATGTCTTAAATCCTTTTCAGAGTGACA  100

seq1  GTTACTCCCCCAGCATGACCATGAGTGTGTGATCCATTGCCGCGTCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTCCCCCAGCATGACCATGAGTGTGTGATCCATTGCCGCGTCTCTC  150

seq1  ATGAAAACCATCGTAAGTCAGCCCATCACAGAACTACTACGGAAGAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAACCATCGTAAGTCAGCCCATCACAGAACTACTACGGAAGAAAAC  200

seq1  TACTTGTCGTGTACAGTTAGACAAAGGAATCTCAGACAACCAGACTACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTCGTGTACAGTTAGACAAAGGAATCTCAGACAACCAGACTACCT  250

seq1  TTTAGTTCCTGCTCTCTCCCCTATTTTGAGAATAAAGCGGGTCCAATTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTCCTGCTCTCTCCCCTATTTTGAGAATAAAGCGGGTCCAATTGT  300

seq1  GATTCAGGCAACTGTACAGAGTAGCACATTAGCATTGCCCCCAACTGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGGCAACTGTACAGAGTAGCACATTAGCATTGCCCCCAACTGAAC  350

seq1  TGCGATGACTATCTGTGTGTATGTGTGGGGAAGAGAGTGCGCCGTATATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGATGACTATCTGTGTGTATGTGTGGGGAAGAGAGTGCGCCGTATATG  400

seq1  CAGATCTGTATGCACATATACGCATACATGCATTGACCCACAGGACATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTGTATGCACATATACGCATACATGCATTGACCCACAGGACATTG  450

seq1  TAAGATAGTATCACATGACATCTTAAGTAGAAGTAAGTAAGGACTTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAGTATCACATGACATCTTAAGTAGAAGTAAGTAAGGACTTTTAT  500

seq1  GCCATCCTTTTCTTCACGTTTACACTTTAATTATTAAAGGTTGCTCCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCTTTTCTTCACGTTTACACTTTAATTATTAAAGGTTGCTCCTGC  550

seq1  CCTTCCCCAACTGTTTGTGCTGTGTACATCACTGCTTTATATAAGTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCCAACTGTTTGTGCTGTGTACATCACTGCTTTATATAAGTTGTT  600

seq1  TTTTAAGGTGAACTCAGATGTTATGGTTTTGTAAATGTCTGCAATCATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGGTGAACTCAGATGTTATGGTTTTGTAAATGTCTGCAATCATGG  650

seq1  ATAGGAATAAAATTGCTTATTTGAAAAAAAACC-AAAAATAAAAAAATTG  699
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATAGGAATAAAATTGCTTATTTGAAAAAAAACCAAAAAATAAAAAAATTG  700

seq1  AGTA-TTTGTTGTTTTGTTTTCAGTGCAGGTCTCATTCACTAT-GTTGTT  747
      |||| |||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGTATTTTGTTGTTTTGTTTTCAGTGCAGGTCTCATTCACTATGGTTGTT  750

seq1  CATGCCATAAACTGAAGGTTC-TCCTGCC-TTGGCCTTCAAGTCCTGGGA  795
      ||||||||||||||||||||| ||||||| ||||||||||||||||||||
seq2  CATGCCATAAACTGAAGGTTCTTCCTGCCTTTGGCCTTCAAGTCCTGGGA  800

seq1  CGATCAGATGAACTACA-TGCTA-GGCTCTGTAGTATTTAATTT-AGT-A  841
      ||||||||||||||||| ||||| |||||||||||||||||||| ||| |
seq2  CGATCAGATGAACTACATTGCTAGGGCTCTGTAGTATTTAATTTAAGTAA  850

seq1  ATCCAGCTTAACACATATCTTTAATGATCATGACTTTGGTGTACCTAAAA  891
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGCTTTACACATATCTTTAATGATCATGACTTTGGTGTACCTAAAA  900

seq1  GCTGTCACCAAACCCAAAGTTATTT-AGCTGTTCTGTGATATCTTC-TAG  939
      ||||||||||||||| ||||||||| |||||||||||||||||||| |||
seq2  GCTGTCACCAAACCCCAAGTTATTTAAGCTGTTCTGTGATATCTTCTTAG  950

seq1  GAGGTTTATACTTTCATTATCTTCCCTTTAGGTCTATAA-TCCATTCTGA  988
      ||||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  GAGGTTTATACTTTCATTATCTTCCTTTTAGGTCTATAATTCCATTCTGA  1000

seq1  ATTCA--TTTTTGTGAAAGAATG-TAAAGTCT-GTGTCTTAA-TGCTC  1031
      |||||  |||||||||||||||| ||| |||| ||||||||| |||||
seq2  ATTCATTTTTTTGTGAAAGAATGTTAAGGTCTGGTGTCTTAATTGCTC  1048