BAC Information

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BAC

Clone NameB6Ng01-146O06
Chromosome4 (Build37)2 (Build37)
Map Location 118,690,885 - 118,692,04459,196,641 - 59,196,868
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703
Downstream geneOTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-146O06.bB6Ng01-146O06.g
ACCDH943917DH943918
length1,144226
definitionDH943917|Mus musculus domesticus DNA, BAC clone: B6Ng01-146O06, 5' end.DH943918|Mus musculus domesticus DNA, BAC clone: B6Ng01-146O06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(118,690,885 - 118,692,044)(59,196,641 - 59,196,868)
sequence
gaattctgcatggcatgtgccatcctgtcaaactgtgcatgcacagaatg
attctagggggccccaactggaacctgagccccattcctagccccatggc
agcccccgagacttcctcatcctctggagaaataaatgagggagtggaca
aagaagggaagacaggagaaagacagagagaactcgcccagaggacatag
caggtaccaggttagtctagcttatgacgcatgaccctgtctcaaaggaa
ttttttttttaagtaaactaggagtgaagaaatagaacaaagaagtccac
agaattccacagaagcttcaacacaggaggggctccagagaacattcttg
aattttctcggcccctatcatcacaaattccaggctggggcaaaggcgag
ggcataagtcctgctgaagccatccacccgcagctgctgaggagggctgt
ctcttatctggaggcagcagactgtcatgagatcttgaattctctagata
gcagaagcttagggacccgagaccctacaaagtgacacatgactgctcca
ggaagggctctggtctgacctttgtgtcaacaacaacaagaaggagaaca
gtgcaccctgacacggacactttgtactgggtactttacccctgtaaggt
cgttagcttttgtgtcaagagagcttgctaagagcatcaccattttgctg
gtaagagagccaaggctcaagacattaaggatcttctcaaagccagccca
agcctgatggtggcaatagccatccaccttctgctctgtgtcagcccctc
tttagtcacctggtgccctgactcacccatccctcatggcagcccggggg
cagcatagccacttacagaggacccgagatgcggctatacataagcaagg
cacacccagaatagaggttcagtgggctgacttgcgtttacttgcactgc
cgcaggctacagggtataaacaccagaaaacctgccatgtgggatggggt
agctctatccactgatgcttggggatcctggctacctgcagcaatggggg
tgccccactgagaataaagttgagacccacaagacatgtagacccaacac
tggctgtcttctggctcatgtctatacgactctggaaaaaaaaa
ccctatactggggcacagaaccttcacaggaccaaaaaacctctcctccc
attgatgaccaactaggccatcctctgctacatatgcagctagagacacg
agtccctccttgtgttttctttgattggtgatttagtcccagggagctct
gtggctactggttagttcatattgatgttcctcctatggggctgcaaacc
ccttcagctccttgggtactttttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_118690885_118692044
seq2: B6Ng01-146O06.b_49_1192

seq1  GAATTCTGCATGGCATGTGCCATCCTGTCAAACTGTGCATGCACAGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCATGGCATGTGCCATCCTGTCAAACTGTGCATGCACAGAATG  50

seq1  ATTCTAGGGGGCCCCAACTGGAACCTGAGCCCCATTCCTAGCCCCATGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGGGGGCCCCAACTGGAACCTGAGCCCCATTCCTAGCCCCATGGC  100

seq1  AGCCCCCGAGACTTCCTCATCCTCTGGAGAAATAAATGAGGGAGTGGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCGAGACTTCCTCATCCTCTGGAGAAATAAATGAGGGAGTGGACA  150

seq1  AAGAAGGGAAGACAGGAGAAAGACAGAGAGAACTCGCCCAGAGGACATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGGAAGACAGGAGAAAGACAGAGAGAACTCGCCCAGAGGACATAG  200

seq1  CAGGTACCAGGTTAGTCTAGCTTATGACGCATGACCCTGTCTCAAAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACCAGGTTAGTCTAGCTTATGACGCATGACCCTGTCTCAAAGGAA  250

seq1  TTTTTTTTTTAAGTAAACTAGGAGTGAAGAAATAGAACAAAGAAGTCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAAGTAAACTAGGAGTGAAGAAATAGAACAAAGAAGTCCAC  300

seq1  AGAATTCCACAGAAGCTTCAACACAGGAGGGGCTCCAGAGAACATTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCCACAGAAGCTTCAACACAGGAGGGGCTCCAGAGAACATTCTTG  350

seq1  AATTTTCTCGGCCCCTATCATCACAAATTCCAGGCTGGGGCAAAGGCGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTCGGCCCCTATCATCACAAATTCCAGGCTGGGGCAAAGGCGAG  400

seq1  GGCATAAGTCCTGCTGAAGCCATCCACCCGCAGCTGCTGAGGAGGGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATAAGTCCTGCTGAAGCCATCCACCCGCAGCTGCTGAGGAGGGCTGT  450

seq1  CTCTTATCTGGAGGCAGCAGACTGTCATGAGATCTTGAATTCTCTAGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATCTGGAGGCAGCAGACTGTCATGAGATCTTGAATTCTCTAGATA  500

seq1  GCAGAAGCTTAGGGACCCGAGACCCTACAAAGTGACACATGACTGCTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGCTTAGGGACCCGAGACCCTACAAAGTGACACATGACTGCTCCA  550

seq1  GGAAGGGCTCTGGTCTGACCTTTGTGTCAACAACAACAAGAAGGAGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGCTCTGGTCTGACCTTTGTGTCAACAACAACAAGAAGGAGAACA  600

seq1  GTGCACCCTGACACGGACACTTTGTACTGGGTACTTTACCCCTGTAAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACCCTGACACGGACACTTTGTACTGGGTACTTTACCCCTGTAAGGT  650

seq1  CGTTAGCTTTTGTGTCAAGAGAGCTTGCTAAGAGCATCACCATTTTGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAGCTTTTGTGTCAAGAGAGCTTGCTAAGAGCATCACCATTTTGCTG  700

seq1  GTAAGAGAGCCAAGGCTCAAGACATTAAGGATCTTCTCAAAGCCAGCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGAGCCAAGGCTCAAGACATTAAGGATCTTCTCAAAGCCAGCCCA  750

seq1  AGCCTGATGGTGGCAATAGCCATCCACCTTCTGCTCTGTGTCAGCCCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGATGGTGGCAATAGCCATCCACCTTCTGCTCTGTGTCAGCCCCTC  800

seq1  TTTAGTCACCTGGTGCCCTGACTCACCCATCCCTCATGGCAGCCCGGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCACCTGGTGCCCTGACTCACCCATCCCTCATGGCAGCCCGGGGG  850

seq1  CAGCATAGCCACTTACAGAGGACCCGAGATGCGGCTATACAATAAGCAAG  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGCATAGCCACTTACAGAGGACCCGAGATGCGGCTATAC-ATAAGCAAG  899

seq1  GCACACCCAGAAATAGAGGTTCAGTGGGCTGACTTGCGTTTACTTGCACT  950
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCACACCCAG-AATAGAGGTTCAGTGGGCTGACTTGCGTTTACTTGCACT  948

seq1  GCCGCAGGGCTACAGGGTATAAACACCAGGAAAACCTGCCATGTGGGATG  1000
      |||||| ||||||||||||||||||||| |||||||||||||||||||||
seq2  GCCGCA-GGCTACAGGGTATAAACACCA-GAAAACCTGCCATGTGGGATG  996

seq1  GGGTAGCTCTATCCACTGATGCTTGGGGATCCTGGCTACCTGCCAGCCAA  1050
      |||||||||||||||||||||||||||||||||||||||||| ||||  |
seq2  GGGTAGCTCTATCCACTGATGCTTGGGGATCCTGGCTACCTG-CAGC--A  1043

seq1  ATGGGGGTGCCCCACTGAGAATAAAGTTGAGGACACACAAGACATGTAGA  1100
      |||||||||||||||||||||||||||||| ||| |||||||||||||||
seq2  ATGGGGGTGCCCCACTGAGAATAAAGTTGA-GACCCACAAGACATGTAGA  1092

seq1  CCCAACCACTGGCTGGCTCTTCTGGGCTCCATGGTCTATACAGACCTTCT  1150
      ||||| |||||||||  |||||| |||| ||| |||||||| |||  |||
seq2  CCCAA-CACTGGCTG--TCTTCT-GGCT-CAT-GTCTATAC-GAC--TCT  1133

seq1  GAAAAAAAAA-  1160
      | |||||||| 
seq2  GGAAAAAAAAA  1144

seq1: chr2_59196641_59196868
seq2: B6Ng01-146O06.g_71_300 (reverse)

seq1  AGAAAAAGGACCCAAGGAGCTGAAGGGGTTTGCAGCCTCATAGGAGGAAC  50
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  AGAAAAAGTACCCAAGGAGCTGAAGGGGTTTGCAGCCCCATAGGAGGAAC  50

seq1  AACAATATGAACTAACCAGTACCCCCAGAGCTCCCTGGGACTAAACCACC  100
      | ||||||||||||||||||| || |||||||||||||||||||| ||||
seq2  ATCAATATGAACTAACCAGTAGCCACAGAGCTCCCTGGGACTAAATCACC  100

seq1  CA-CAAAGAAAACACATGGGGGGACTCATGGCTCTAGCTGCATATGAAGC  149
       | ||||||||||||| || ||||||| || ||||||||||||||| |||
seq2  AATCAAAGAAAACACAAGGAGGGACTCGTGTCTCTAGCTGCATATGTAGC  150

seq1  TGAAGATGGCCTAGTCGGTCATCAATAAGAGGAGAGG-CCCTTGGTCCTG  198
       || ||||||||||| ||||||||||  |||||||||    |||||||||
seq2  AGAGGATGGCCTAGTTGGTCATCAATGGGAGGAGAGGTTTTTTGGTCCTG  200

seq1  TGAAGGTTCTATGCCCCAGTATAGGGGAAT  228
      |||||||||| |||||||||||||||||||
seq2  TGAAGGTTCTGTGCCCCAGTATAGGGGAAT  230