BAC Information

Click to search

BAC

Clone NameB6Ng01-147A22
Chromosome4 (Build37)13 (Build37)
Map Location 145,731,191 - 145,731,95865,862,226 - 65,862,426
singlet/doubletsingletsinglet
Overlap geneLOC433791
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790
Downstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147A22.bB6Ng01-147A22.g
ACCDH944040DH944041
length1,026984
definitionDH944040|Mus musculus domesticus DNA, BAC clone: B6Ng01-147A22, 5' end.DH944041|Mus musculus domesticus DNA, BAC clone: B6Ng01-147A22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(145,731,191 - 145,731,958)(65,862,226 - 65,862,426)
sequence
gaattctctgatgaatcctcaaactgaattttttagtaaagcatttgtca
cattcactgcatttgtaaggtttctctcctgtatgaattctctgatgaat
tctcagatggccattttcagtaaaggatttgtcacattgactacatttgt
aaggtttctcacctgtatgatttctctgatgaattctcagatggccattt
tcagtaaaggatttgtcacattgactacatttgtaaggtttctctcctgt
atgaattctctgatgaatattaagatgggatttttgggtaaagcatttgt
cacattcactgcatttgtaaggtttatctcctgtatgaatcctctgatga
attctcagattgcctttttcagtaaagcatttctcacatacaatgcattt
gtaaggtttctctcctgtatgaattctctgatgaatattaagatgagatt
tttgggtaaagcatttgtcacattcactacatttgtaaggtttctctcct
gtatgaattctctgatgaatattaagatgaaatttgtgggtaaagcattt
gtcacattcactacatttataaattttctcttctgcatgaattccctgat
ggatactaagatcgatctgatgggtaaagcatttgtcacttttactactt
ctgtaacgtttcttttcatgataaattctctgctgactttgaagtttgtc
tctctgggtaagatatttgtcaaatttactacatttgtaagggttcactc
cagtattatttcgtttcaccatgactttatgtttagaaataaaaagcctt
ctcagattctgcatttccgttgtgttttttcttctgcatgtggattccct
gattgagactaatggaagaaaacaaagttaaactgtttacagagtcattg
tatttgcaaactttttatgtcctgggctaaagtcttttttggttcgaaaa
ttgagagcatcagagtgtgatagttttgtaagtgtacattggggaggctt
caagtatcacattgcttaagttgtcc
gaattcatacaggaaagaaaccttacaaatgcagtgagtgtgacaaatgc
tttactgacaaaggctatctgagagttcatcagagaattcatactggaga
gaaaccttacaaatgcagtgagtgtgacaaatgctttactgacaaaggct
atctgagagttcatcagagaattcatactggagagaaaccttacaaatgc
agtgaatgtgacaaatgctttacccaacaatcccatcttagtattcatca
gagaattcatacaggagagaaaccttacaaatgtagtgaatgcgacaaat
gctttactgacaaattcattctgggaaagcatcagagaattcatacagga
aagaaaccttacaaatgcagtgagtgtgacaaatgctttactgacaaatt
cactctgagaaagcatcagagaattcatacaggagagaaaccttacaaat
gtaatgaatgtgacaaatgctttactgacaaaggctatctgagagttcat
cagagaattcatactggagagaaaccttacaaatgcagtgagtgtgacaa
atgctttacccaaccatcccatcttagtattcattgtagaattcattcag
gagagaaaccttacaaatgcagtgagtgtgacaaatgctttaaccaacca
tcccatcttagtattcatcgtagaattcattcaggagagaaaccttacaa
atgtagtgaatgcgacaaatgctttactgacaaattcactctgagaaagc
atcagataattcatacaggagagaaaccttacaaatgcagtgagtgtgac
aaatgctttactgacaaaggctatctgagagttcatcatagaattcatgc
aggagagaaaccttacaaatgtagtgaatgcgacaaatgctttactgaca
aaggctatctgagagttcatcatagaattcatgcagagagaaccttacaa
atgtagtgaatgtgacaaatgctttactgacagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145731191_145731958
seq2: B6Ng01-147A22.b_312_1074

seq1  TGAATATTAAGATGGGATTTTTGGGTAAAGCATTTGTCACATTCACTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTAAGATGGGATTTTTGGGTAAAGCATTTGTCACATTCACTGCA  50

seq1  TTTGTAAGGTTTATCTCCTGTATGAATCCTCTGATGAATTCTCAGATTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGGTTTATCTCCTGTATGAATCCTCTGATGAATTCTCAGATTGC  100

seq1  CTTTTTCAGTAAAGCATTTCTCACATACAATGCATTTGTAAGGTTTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCAGTAAAGCATTTCTCACATACAATGCATTTGTAAGGTTTCTCT  150

seq1  CCTGTATGAATTCTCTGATGAATATTAAGATGAGATTTTTGGGTAAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATGAATTCTCTGATGAATATTAAGATGAGATTTTTGGGTAAAGCA  200

seq1  TTTGTCACATTCACTACATTTGTAAGGTTTCTCTCCTGTATGAATTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCACATTCACTACATTTGTAAGGTTTCTCTCCTGTATGAATTCTCT  250

seq1  GATGAATATTAAGATGAAATTTGTGGGTAAAGCATTTGTCACATTCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GATGAATATTAAGATGAAATTTGTGGGTAAAGCATTTGTCACATTCACTA  300

seq1  CATTTATAAATTTTCTCTTCTGCATGAATTCCCTGATGGATACTAAGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATAAATTTTCTCTTCTGCATGAATTCCCTGATGGATACTAAGATC  350

seq1  GATCTGATGGGTAAAGCATTTGTCACTTTTACTACTTCTGAAATGTTTCT  400
      |||||||||||||||||||||||||||||||||||||||| || ||||||
seq2  GATCTGATGGGTAAAGCATTTGTCACTTTTACTACTTCTGTAACGTTTCT  400

seq1  TTTCATGATAAATTCTCTGCTGACTTTGAAGTTTGTCTCTCTGGGTAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGATAAATTCTCTGCTGACTTTGAAGTTTGTCTCTCTGGGTAAGA  450

seq1  TATTTGTCAAATTTACTACATTTGTAAGGGTTCACTCCAGTATTATTTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTCAAATTTACTACATTTGTAAGGGTTCACTCCAGTATTATTTCG  500

seq1  TTTCACCATGACTTTATGTTTAGAAAT-AAAAGCCTTCTCAGATTCTGCA  549
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTCACCATGACTTTATGTTTAGAAATAAAAAGCCTTCTCAGATTCTGCA  550

seq1  TTTCCGTTGTGTTTTTTCTTCTGCATGTGGATTCCCTGATTGAGACTAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCGTTGTGTTTTTTCTTCTGCATGTGGATTCCCTGATTGAGACTAAT  600

seq1  GGTAGAAAACAAAGTTAAACTGTTTACAGAGTCATTGTATTTGCAAACTT  649
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAACAAAGTTAAACTGTTTACAGAGTCATTGTATTTGCAAACTT  650

seq1  CTTTAGTGTTCCTGGGCTTAAGTCTTTTTTGGTTCGAAAATTGAAGAGCA  699
       |||| || ||||||||| |||||||||||||||||||||||| ||||||
seq2  -TTTA-TG-TCCTGGGCTAAAGTCTTTTTTGGTTCGAAAATTG-AGAGCA  696

seq1  TCAGAGGTGTGATTAGTTTTGTAAGGTGTACATTGGGG-GGCTTCAAGTA  748
      ||||| |||||| ||||||||||| ||||||||||||| |||||||||||
seq2  TCAGA-GTGTGA-TAGTTTTGTAA-GTGTACATTGGGGAGGCTTCAAGTA  743

seq1  TCACATTGCTAAGTTTGTCC  768
      |||||||||| |  ||||||
seq2  TCACATTGCTTAAGTTGTCC  763

seq1: chr13_65862226_65862426
seq2: B6Ng01-147A22.g_327_443 (reverse)

seq1  CACACTCATTGCATTTGTAAGGTTTCTCTAAAATGTGTGTTCCTTTAAGT  50
      |||||||| ||||||||||||||||||            ||||| || | 
seq2  CACACTCACTGCATTTGTAAGGTTTCT------------TTCCTGTATGA  38

seq1  ATTTGGAGTGTACTGTGACATGCAAAGGCTTTAACACATTTATTACAATC  100
      |||         || ||        | |||||  || |            
seq2  ATT---------CTCTG--------ATGCTTTCCCAGA------------  59

seq1  ACAGGGCTTCTCTCAACTATGTGCTCATTTATGTACTTGGAGATGACTGT  150
                                                |||| | |
seq2  ------------------------------------------ATGAATTT  67

seq1  GATATGCAAAGGTTTTCTCATATCAATTACATTCATAAGGTTTCTCTCCT  200
      | |  | ||||  ||| ||  ||  | ||||||  |||||||||||||||
seq2  G-TCAGTAAAGCATTTGTCGCATTCACTACATTTGTAAGGTTTCTCTCCT  116

seq1  G  201
      |
seq2  G  117