BAC Information

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BAC

Clone NameB6Ng01-147C19
Chromosome4 (Build37)
Map Location 142,769,433 - 142,962,941
singlet/doubletdoublet
Overlap genePrdm2, EG626575, LOC433776, Pdpn, Lrrc38
Upstream geneEG665983, LOC546484, 6330411D24Rik, LOC666018
Downstream geneLOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147C19.bB6Ng01-147C19.g
ACCDH944127DH944128
length929697
definitionDH944127|Mus musculus domesticus DNA, BAC clone: B6Ng01-147C19, 5' end.DH944128|Mus musculus domesticus DNA, BAC clone: B6Ng01-147C19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,769,433 - 142,770,343)(142,962,374 - 142,962,941)
sequence
gaaaattggcaaaaattcaactaaaagcccttccaaggggattctgagtg
tccttctgtacgccctcagcagcttctcaatagtctgtaaaggatctgca
ttgattacaactttttaaaagcttatattaactttcatgtgtaaaataga
gcatatgtagtacaatcataaacacttgaaaattaacataagagaaaata
tgaatggaataaagctataaatcattcaaactcttcattctatctctcta
cagacctcaaactgtccttactaaacaaagtcattcttacaattctctta
taatcagggttaggacttgggttttataaataaatacttctgaagttgat
ttgcctaattacagtggagacatagtttccactcattagctttgtaacac
atcgttcatgagacatcttgtcttgcagagtttcagagtcagcatacatg
ctaacctatggcatctcctatttacctgatataaaacctatcagaaagta
cagcaaaccaatgaagatgcagtcagtagaacctcaggacccctgcagtc
aagaacaacacattctgtacggaacaggaggcagaggctagtcttgctgc
gtgtggctgggacatacacaccccactcccacctaaagtcagctaggaat
tgcatctataaacactaacaaccagttaaactgtgagacagaacaatata
ataaccccagtgctcagtaagcaaagttccagtgagaattagaagacatg
caagtcatatttacagctctcatcagaagacatctaaatgacaaagaata
gaagcatgacctatttcaggagtgtgttcttacaagagctctacaactta
ctcttagtgttgtatctaaatctttacatcacagacacaaaatcaattac
aaataagctttttatactcactagaaatt
gaattccaggacagccaaggctatacagagaaacaaccctgtctcgaaaa
accaaaaaaaaaaaaaaagggggtgattgagagtctgactagaagaaaag
aaagaggagagggaggctaggaaagtaagagaaggagggaccatgagatt
tagcttgaagccatccaatacagaagcctctgggagattgtggttagctt
catgtgtcaagttgactgggctgtaaagtgctcagatgtgtgcttagtcc
caagtgtgtctactgcagctatttctagccaaatcaacacttaaatcgag
tgattgtgtagcatgatgttggtatcagtcaatccatccggggcctgagt
aaatcacagaggcagcagaggagaaactcactctccctgactgctgaact
aagccttctacagccctggcttgggactgcagcatcaactctcctgtctc
cagcttgccaactgcaaatcgtggtacttgtcctcacccacctatgtgag
cccggttccttgagtccatctcttgatatggcgtctcttgtatgccttgt
ttctctggagatccctgatgcacacagcatctggtcgcactggaatgcct
cctatgagttactctctgtcctgggacctcatttatttccttttttaaga
gtctgctactgtttcccaagtgatcattttgctttccttgtttttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_142769433_142770343
seq2: B6Ng01-147C19.b_17_929

seq1  TCAACT-AAAGTCCT--CCAGGGGATTCTGAGTGTCCTTCTGTACGCCCT  47
      |||||| |||| |||  | |||||||||||||||||||||||||||||||
seq2  TCAACTAAAAGCCCTTCCAAGGGGATTCTGAGTGTCCTTCTGTACGCCCT  50

seq1  CAGCAGCTTCTCAATAGTCTGTAAAGGATCTGCATTGATTACAACTTTTT  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCTTCTCAATAGTCTGTAAAGGATCTGCATTGATTACAACTTTTT  100

seq1  AAAAGCTTATATTAACTTTCATGTGTAAAATAGAGCATATGTAGTACAAT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTTATATTAACTTTCATGTGTAAAATAGAGCATATGTAGTACAAT  150

seq1  CATAAACACTTGAAAATTAACATAAGAGAAAATATGAATGGAATAAAGCT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACACTTGAAAATTAACATAAGAGAAAATATGAATGGAATAAAGCT  200

seq1  ATAAATCATTCAAACTCTTCATTCTATCTCTCTACAGACCTCAAACTGTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCATTCAAACTCTTCATTCTATCTCTCTACAGACCTCAAACTGTC  250

seq1  CTTACTAAACAAAGTCATTCTTACAATTCTCTTATAATCAGGGTTAGGAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTAAACAAAGTCATTCTTACAATTCTCTTATAATCAGGGTTAGGAC  300

seq1  TTGGGTTTTATAAATAAATACTTCTGAAGTTGATTTGCCTAATTACAGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTTTATAAATAAATACTTCTGAAGTTGATTTGCCTAATTACAGTG  350

seq1  GAGACATAGTTTCCACTCATTAGCTTTGTAACACATCGTTCATGAGACAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATAGTTTCCACTCATTAGCTTTGTAACACATCGTTCATGAGACAT  400

seq1  CTTGTCTTGCAGAGTTTCAGAGTCAGCATACATGCTAACCTATGGCATCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTTGCAGAGTTTCAGAGTCAGCATACATGCTAACCTATGGCATCT  450

seq1  CCTATTTACCTGATATAAAACCTATCAGAAAGTACAGCAAACCAATGAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTACCTGATATAAAACCTATCAGAAAGTACAGCAAACCAATGAAG  500

seq1  ATGCAGTCAGTAGAACCTCAGGACCCCTGCAGTCAAGAACAACACATTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTCAGTAGAACCTCAGGACCCCTGCAGTCAAGAACAACACATTCT  550

seq1  GTACGGAACAGGAGGCAGAGGCTAGTCTTGCTGCGTGTGGCTGGGACATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGGAACAGGAGGCAGAGGCTAGTCTTGCTGCGTGTGGCTGGGACATA  600

seq1  CACACCCCACTCCCACCTAAAGTCAGCTAGGAATTGCATCTATAAACACT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCCACTCCCACCTAAAGTCAGCTAGGAATTGCATCTATAAACACT  650

seq1  AACAACCAGTTAAACTGTGAGACAGAACAATATAATAACCCCAGTGCTCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCAGTTAAACTGTGAGACAGAACAATATAATAACCCCAGTGCTCA  700

seq1  GTAAGCAAAGTTCCAGTGAGAATTAGAAGACATGCAAGTCATATTTACAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCAAAGTTCCAGTGAGAATTAGAAGACATGCAAGTCATATTTACAG  750

seq1  CTCTCATCAGAAGAACATCTAAATGACAAAAGAATAGAAGCATGACCTA-  796
      ||||||||||||| ||||||||||||| ||||||||||||||||||||| 
seq2  CTCTCATCAGAAG-ACATCTAAATGAC-AAAGAATAGAAGCATGACCTAT  798

seq1  TTCAGGAGTGTGTTCTTACAAGAGCTCTACAACTTACTCTTAGTGTTGTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAGTGTGTTCTTACAAGAGCTCTACAACTTACTCTTAGTGTTGTA  848

seq1  TCTAAATC-TTACATCACAGACACAAAAATCAAATACAAACAAGC-TTTT  894
      |||||||| ||||||||||||||| |||||||| |||||| |||| ||||
seq2  TCTAAATCTTTACATCACAGACAC-AAAATCAATTACAAATAAGCTTTTT  897

seq1  ATACTCAACAAGAAATT  911
      |||||| || |||||||
seq2  ATACTC-ACTAGAAATT  913

seq1: chr4_142962374_142962941
seq2: B6Ng01-147C19.g_198_767 (reverse)

seq1  TAAAATACAAGG-AAGCAAAATGATCACTTGGGAAACAGTAGCAGACTCT  49
      ||||| |||||| |||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACAAGGAAAGCAAAATGATCACTTGGGAAACAGTAGCAGACTCT  50

seq1  T-AAAAAGGAAATAAATGAGGTCCCAGGACAGAGAGTAACTCATAGGAGG  98
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGGAAATAAATGAGGTCCCAGGACAGAGAGTAACTCATAGGAGG  100

seq1  CATTCCAGTGCGACCAGATGCTGTGTGCATCAGGGATCTCCAGAGAAACA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAGTGCGACCAGATGCTGTGTGCATCAGGGATCTCCAGAGAAACA  150

seq1  AGGCATACAAGAGACGCCATATCAAGAGATGGACTCAAGGAACCGGGCTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATACAAGAGACGCCATATCAAGAGATGGACTCAAGGAACCGGGCTC  200

seq1  ACATAGGTGGGTGAGGACAAGTACCACGATTTGCAGTTGGCAAGCTGGAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGTGGGTGAGGACAAGTACCACGATTTGCAGTTGGCAAGCTGGAG  250

seq1  ACAGGAGAGTTGATGCTGCAGTCCCAAGCCAGGGCTGTAGAAGGCTTAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGAGTTGATGCTGCAGTCCCAAGCCAGGGCTGTAGAAGGCTTAGT  300

seq1  TCAGCAGTCAGGGAGAGTGAGTTTCTCCTCTGCTGCCTCTGTGATTTACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGTCAGGGAGAGTGAGTTTCTCCTCTGCTGCCTCTGTGATTTACT  350

seq1  CAGGCCCCGGATGGATTGACTGATACCAACATCATGCTACACAATCACTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCCGGATGGATTGACTGATACCAACATCATGCTACACAATCACTC  400

seq1  GATTTAAGTGTTGATTTGGCTAGAAATAGCTGCAGTAGACACACTTGGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAGTGTTGATTTGGCTAGAAATAGCTGCAGTAGACACACTTGGGA  450

seq1  CTAAGCACACATCTGAGCACTTTACAGCCCAGTCAACTTGACACATGAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCACACATCTGAGCACTTTACAGCCCAGTCAACTTGACACATGAAG  500

seq1  CTAACCACAATCTCCCAGAGGCTTCTGTATTGGATGGCTTCAAGCTAAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCACAATCTCCCAGAGGCTTCTGTATTGGATGGCTTCAAGCTAAAT  550

seq1  CTCATGGTCCCTCCTTCTCT  568
      ||||||||||||||||||||
seq2  CTCATGGTCCCTCCTTCTCT  570