BAC Information

Click to search

BAC

Clone NameB6Ng01-147P05
Chromosome4 (Build37)
Map Location 100,201,474 - 100,336,961
singlet/doubletdoublet
Overlap geneUbe2u, LOC277707, LOC621573
Upstream geneLOC638890, LOC100042589, Foxd3, Alg6, Itgb3bp, BC020077, Pgm2, Ror1
Downstream geneCachd1, LOC100039747, Raver2, Jak1, E130102H24Rik, Ak3l1, LOC669460, Dnajc6, Leprot
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-147P05.bB6Ng01-147P05.g
ACCDH944686DH944687
length923120
definitionDH944686|Mus musculus domesticus DNA, BAC clone: B6Ng01-147P05, 5' end.DH944687|Mus musculus domesticus DNA, BAC clone: B6Ng01-147P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,336,039 - 100,336,961)(100,201,474 - 100,201,593)
sequence
gaattctcctgcctttggtactgagggctgggattacagacacaccctca
caacatctgacttaatgatcactattcggatgaaccaatgaatggacagg
cagtattgcaaaaacaaaattaccacctttccctctattataaattgagc
ccagggcatcacacatgctcggaaagtattctatcactgaggtgcatccc
tgatcccttaaaaaagaattccattcagtatgctaataacctgttgaaag
aaagtctttctgctttttggtttgtttgttttgggagttttctctgatgg
atcagacgggacagaaacagccctgcatccttaagaggactaggtcccct
gtgcctggcttgaccaaaaggagcttccggcaacagagatttccttgtca
ctagcctgaagaagaggaggtagaagagagcaggagggactggagagcct
actgtgctatttctgcctttcacgacgtctcctgtgatattcaccttgtc
cttcatctagagagcctggtgtgtactcccaggaactcagaggatgcagt
gactcttagagaaagctaatggcttctgggtgtagcagaagaaaattcag
aaagagaacactgtggttattgcgcttcttaaagccaagttatggggcca
tggaaaaaggagcctgttctaagagggccctgtggagaaaaatgggactc
aacagagagttggaccaccctatgacccattggaagccacagtcttctct
cagggaaactgcagataagtcccttttagcagaaagtctccgagggaccc
atcaacgtttctgacaaaacagtgagccaggactggctctatggctcagt
gtaagtaaaggtgctgttttgccaagactgactatgaactcactgcctga
gactcacatgggaggagagaaat
ctaggagaggagtattttctctattcttattcctcccaccccaccccatc
tcttcacacacacactctctctctctctgcctttctatcatgcttcattg
tgtgtgtgtggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_100336039_100336961
seq2: B6Ng01-147P05.b_50_972 (reverse)

seq1  ATTTCTCTCCTTCCATGTGAGTCTCAGGCAGTGAGTTCATAGTCAGTCTT  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTCCTCCCATGTGAGTCTCAGGCAGTGAGTTCATAGTCAGTCTT  50

seq1  GGCAAAACAGCACCTTTACTTACACTGAGCCATAGAGCCAGTCCTGGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAACAGCACCTTTACTTACACTGAGCCATAGAGCCAGTCCTGGCTC  100

seq1  ACTGTTTTGTCAGAAACGTTGATGGGTCCCTCGGAGACTTTCTGCTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTGTCAGAAACGTTGATGGGTCCCTCGGAGACTTTCTGCTAAAA  150

seq1  GGGACTTATCTGCAGTTTCCCTGAGAGAAGACTGTGGCTTCCAATGGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTATCTGCAGTTTCCCTGAGAGAAGACTGTGGCTTCCAATGGGTC  200

seq1  ATAGGGTGGTCCAACTCTCTGTTGAGTCCCATTTTTCTCCACAGGGCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGTGGTCCAACTCTCTGTTGAGTCCCATTTTTCTCCACAGGGCCCT  250

seq1  CTTAGAACAGGCTCCTTTTTCCATGGCCCCATAACTTGGCTTTAAGAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAACAGGCTCCTTTTTCCATGGCCCCATAACTTGGCTTTAAGAAGC  300

seq1  GCAATAACCACAGTGTTCTCTTTCTGAATTTTCTTCTGCTACACCCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAACCACAGTGTTCTCTTTCTGAATTTTCTTCTGCTACACCCAGAA  350

seq1  GCCATTAGCTTTCTCTAAGAGTCACTGCATCCTCTGAGTTCCTGGGAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTAGCTTTCTCTAAGAGTCACTGCATCCTCTGAGTTCCTGGGAGTA  400

seq1  CACACCAGGCTCTCTAGATGAAGGACAAGGTGAATATCACAGGAGACGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAGGCTCTCTAGATGAAGGACAAGGTGAATATCACAGGAGACGTC  450

seq1  GTGAAAGGCAGAAATAGCACAGTAGGCTCTCCAGTCCCTCCTGCTCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGGCAGAAATAGCACAGTAGGCTCTCCAGTCCCTCCTGCTCTCTT  500

seq1  CTACCTCCTCTTCTTCAGGCTAGTGACAAGGAAATCTCTGTTGCCGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCCTCTTCTTCAGGCTAGTGACAAGGAAATCTCTGTTGCCGGAAG  550

seq1  CTCCTTTTGGTCAAGCCAGGCACAGGGGACCTAGTCCTCTTAAGGATGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTGGTCAAGCCAGGCACAGGGGACCTAGTCCTCTTAAGGATGCA  600

seq1  GGGCTGTTTCTGTCCCGTCTGATCCATCAGAGAAAACTCCCAAAACAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTTTCTGTCCCGTCTGATCCATCAGAGAAAACTCCCAAAACAAAC  650

seq1  AAACCAAAAAGCAGAAAGACTTTCTTTCAACAGGTTATTAGCATACTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAAAGCAGAAAGACTTTCTTTCAACAGGTTATTAGCATACTGAA  700

seq1  TGGAATTCTTTTTTAAGGGATCAGGGATGCACCTCAGTGATAGAATACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTCTTTTTTAAGGGATCAGGGATGCACCTCAGTGATAGAATACTT  750

seq1  TCCGAGCATGTGTGATGCCCTGGGCTCAATTTATAATAGAGGGAAAGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAGCATGTGTGATGCCCTGGGCTCAATTTATAATAGAGGGAAAGGTG  800

seq1  GTAATTTTGTTTTTGCAATACTGCCTGTCCATTCATTGGTTCATCCGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTGTTTTTGCAATACTGCCTGTCCATTCATTGGTTCATCCGAAT  850

seq1  AGTGATCATTAAGTCAGATGTTGTGAGGGTGTGTCTGTAATCCCAGCCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCATTAAGTCAGATGTTGTGAGGGTGTGTCTGTAATCCCAGCCCT  900

seq1  CAGTACCAAAGGCAGGAGAATTC  923
      |||||||||||||||||||||||
seq2  CAGTACCAAAGGCAGGAGAATTC  923

seq1: chr4_100201474_100201593
seq2: B6Ng01-147P05.g_76_195

seq1  CTAGGAGAGGAGTATTTTCTCTATTCTTATTCCTCCCACCCCACCCCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGAGGAGTATTTTCTCTATTCTTATTCCTCCCACCCCACCCCATC  50

seq1  TCTTCACACACACACTCTCTCTCTCTCTGCCTTTCTATCATGCTTCATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACACACACACTCTCTCTCTCTCTGCCTTTCTATCATGCTTCATTG  100

seq1  TGTGTGTGTGGGGGGGGGGG  120
      ||||||||||||||||||||
seq2  TGTGTGTGTGGGGGGGGGGG  120