BAC Information

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BAC

Clone NameB6Ng01-148F06
Chromosome4 (Build37)
Map Location 44,973,839 - 45,071,399
singlet/doubletdoublet
Overlap geneGrhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10
Upstream geneGlipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk, Pax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e
Downstream gene1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148F06.bB6Ng01-148F06.g
ACCDH944973DH944974
length1,140927
definitionDH944973|Mus musculus domesticus DNA, BAC clone: B6Ng01-148F06, 5' end.DH944974|Mus musculus domesticus DNA, BAC clone: B6Ng01-148F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,070,248 - 45,071,399)(44,973,839 - 44,974,771)
sequence
gaattcactgcatcaggagctgcagaaagacaaggaagccatggcgctag
ccagctctgtgcagggctgccttatccgcaagtgcctcttccgggatggg
aagggcggcgtcttcgtctgctcttatggccgtgccaagatggaaggaaa
cgtctttcggaacctgacttacgcggtgcggtgtatacacaatagcaagg
tactgccccagggactgatactctagactgaggcctcactgggtggtcac
tgccaagagcctgagccttgcttttgagagggctcctgtggctgtgtgtg
gaaagggtgtgatgagctatttgcatttttaaaagatttttcctttccat
catctgacttggataagacaaatctcttcccatttcccagaaaaaaaaat
agagacccagagcgggaaagagtcttacttggggtcactgagcaagttgg
agacagaacccaggtcttgtaccccgactcacgtgtgtcattctgcttct
cttacctgttacgtaggtgtgcttagaagaaagacatgatcactgccttc
attttagactccagtgggatagttgagaagggtttctgcagaagctggtg
tctgagctgagggtgaatagagggtacagggcaggcagagcatacatggt
tggaaaagagggtgcatcctagaagcaagtacatcccacactgagctgtt
ttgcgaggctgagtcacccacgcagctggaacacatttagaggctgtggg
actggggagatggctcagaagttaagagcattgttgctcttccaggggac
ccaggtttggttttcagcacctacatggtggctcacaaccatctgtaact
ccagttccaggggatccaaagcccttcttctgaaccccatgggcaacagg
caagtacacacacatatatatatacaggtaaaaatactcatacacataga
ggaaaataatcttattttttttaaagaaaagagctataggtagtatcagg
agccatgttgcccagagtctaaaagtgggcatcgcacaagagagctctca
gcgctgatgaaatactctcttgcagagaaatcattctgaatgctatgaac
aattcccataatcatcacgttggtgccagaggctctgaag
gaattcagcggaaatgcacttccatctataacaaaacttaatttgaaaaa
gaaagtgccgctcattaaggcacctgctgtaaagagccacaggcagccga
tcagaggacaggctttgtcagctagcccagtgccattaacctttcccgga
gcttagccaaaagctcaagttttcccaattaattctacatatttcacatg
actccaataccaagctctgacttatcagaagggcccaagggaaaggtgca
gctatgaaatagagagctgactccacaccaacaaaacaatactggattcc
agcctgcaggacacagagcagctgtcctagcaagtaccaaggctttctgt
tggatttcattaataatactaataattattattattaattaataataatt
aatgataataatagcagccagaacaaacatcacctgaaacctccgaaaga
gtcaccgtaataaacacgccctacttactcacacacagagcaatggggat
tccagtgctcctggccactccgggaggaagcgccttctgccttctgtccc
tgccagcacctagtgcgtgcccagcaccaaccgtacactggacaggagga
aagagaagatttcacagggaatccgagggctcacgaaggacccgtgcgct
atcacacgtacatcacggccaagtcaagcacatagatagccccatcttac
taggtaaactgaaaatgacatctgacccagaaaggggggtggggggtggg
gacccaaccagatagagcacaattcttcttatgtgcctactatgacctct
ggatttttttcttgttttgagtctctgatacttttggccacattgtgata
agtagatgtgggcaacagctgtggcctctgtgcctggaatctcagagagg
gaaataactcttaggaagggcctggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_45070248_45071399
seq2: B6Ng01-148F06.b_47_1186 (reverse)

seq1  CTTCAGAGCCCTCTGTGGCACCAACCGTGATGGATATGGGGATTGTTTCA  50
      |||||||||   || ||||||||| |||||||  |||||| |||| ||||
seq2  CTTCAGAGC---CTCTGGCACCAA-CGTGATGATTATGGGAATTG-TTCA  45

seq1  TAGCACTCAGTATGACTTCTCCTGCAAGAGAGTAATTTCATCAGCGGCTG  100
      ||||| |||| |||| |||| |||||||||||| ||||||||||| ||||
seq2  TAGCATTCAGAATGATTTCT-CTGCAAGAGAGT-ATTTCATCAGC-GCTG  92

seq1  AGGAGCTCTCTCTGTGCGATGCCCACCTTTTTAGACTCTGGGCAACATGG  150
      | ||||||||| ||||||||||||||  ||||||||||||||||||||||
seq2  A-GAGCTCTCT-TGTGCGATGCCCAC--TTTTAGACTCTGGGCAACATGG  138

seq1  CTCCTGATTACTACCTATAGCTC-TGTCTTTAAAAAAAATTAAGATTTAT  199
      ||||||| ||||||||||||||| | ||||||||||||| ||||| ||||
seq2  CTCCTGA-TACTACCTATAGCTCTTTTCTTTAAAAAAAA-TAAGA-TTAT  185

seq1  TTTCCTCTATGTGTATGAGTATTTTTACCTGTATATATATATGTGTGTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTATGTGTATGAGTATTTTTACCTGTATATATATATGTGTGTGT  235

seq1  ACTTGCCTGTTGCCCATGGGGTTCAGAAG-AGGGCTTTGGATCCCCTGGA  298
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACTTGCCTGTTGCCCATGGGGTTCAGAAGAAGGGCTTTGGATCCCCTGGA  285

seq1  ACTGGAGTTACAGATGGTTGTGAGCCACCATGTAGGTGCTGAAAACCAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGTTACAGATGGTTGTGAGCCACCATGTAGGTGCTGAAAACCAAA  335

seq1  CCTGGGTCCCCTGGAAGAGCAACAATGCTCTTAACTTCTGAGCCATCTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTCCCCTGGAAGAGCAACAATGCTCTTAACTTCTGAGCCATCTCC  385

seq1  CCAGTCCCACAGCCTCTAAATGTGTTCCAGCTGCGTGGGTGACTCAGCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCCACAGCCTCTAAATGTGTTCCAGCTGCGTGGGTGACTCAGCCT  435

seq1  CGC-AAACAGCTCAGTGTGGGATGTACTTGCTTCTAGGATGCACCCTCTT  497
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAAACAGCTCAGTGTGGGATGTACTTGCTTCTAGGATGCACCCTCTT  485

seq1  TTCCAACCATGTATGCTCTGCCTGCCCTGTACCCTCTATTCACCCTCAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACCATGTATGCTCTGCCTGCCCTGTACCCTCTATTCACCCTCAGC  535

seq1  TCAGACACCAGCTTCTGCAGAAACCCTTCTCAACTATCCCACTGGAGTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACCAGCTTCTGCAGAAACCCTTCTCAACTATCCCACTGGAGTCT  585

seq1  AAAATGAAGGCAGTGATCATGTCTTTCTTCTAAGCACACCTACGTAACAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAGGCAGTGATCATGTCTTTCTTCTAAGCACACCTACGTAACAG  635

seq1  GTAAGAGAAGCAGAATGACACACGTGAGTCGGGGTACAAGACCTGGGTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGAAGCAGAATGACACACGTGAGTCGGGGTACAAGACCTGGGTTC  685

seq1  TGTCTCCAACTTGCTCAGTGACCCCAAGTAAGACTCTTTCCCGCTCTGGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCAACTTGCTCAGTGACCCCAAGTAAGACTCTTTCCCGCTCTGGG  735

seq1  TCTCTATTTTTTTTTCTGGGAAATGGGAAGAGATTTGTCTTATCCAAGTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATTTTTTTTTCTGGGAAATGGGAAGAGATTTGTCTTATCCAAGTC  785

seq1  AGATGATGGAAAGGAAAAATCTTTTAAAAATGCAAATAGCTCATCACACC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATGGAAAGGAAAAATCTTTTAAAAATGCAAATAGCTCATCACACC  835

seq1  CTTTCCACACACAGCCACAGGAGCCCTCTCAAAAGCAAGGCTCAGGCTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCACACACAGCCACAGGAGCCCTCTCAAAAGCAAGGCTCAGGCTCT  885

seq1  TGGCAGTGACCACCCAGTGAGGCCTCAGTCTAGAGTATCAGTCCCTGGGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTGACCACCCAGTGAGGCCTCAGTCTAGAGTATCAGTCCCTGGGG  935

seq1  CAGTACCTTGCTATTGTGTATACACCGCACCGCGTAAGTCAGGTTCCGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCTTGCTATTGTGTATACACCGCACCGCGTAAGTCAGGTTCCGAA  985

seq1  AGACGTTTCCTTCCATCTTGGCACGGCCATAAGAGCAGACGAAGACGCCG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTTTCCTTCCATCTTGGCACGGCCATAAGAGCAGACGAAGACGCCG  1035

seq1  CCCTTCCCATCCCGGAAGAGGCACTTGCGGATAAGGCAGCCCTGCACAGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCCATCCCGGAAGAGGCACTTGCGGATAAGGCAGCCCTGCACAGA  1085

seq1  GCTGGCTAGCGCCATGGCTTCCTTGTCTTTCTGCAGCTCCTGATGCAGTG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTAGCGCCATGGCTTCCTTGTCTTTCTGCAGCTCCTGATGCAGTG  1135

seq1  AATTC  1152
      |||||
seq2  AATTC  1140

seq1: chr4_44973839_44974771
seq2: B6Ng01-148F06.g_68_994

seq1  GAATTCAGCGGAAATGCACTTCCATCTATAACAAAACTTAATTTGAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCGGAAATGCACTTCCATCTATAACAAAACTTAATTTGAAAAA  50

seq1  GAAAGTGCCGCTCATTAAGGCACCTGCTGTAAAGAGCCACAGGCAGCCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGCCGCTCATTAAGGCACCTGCTGTAAAGAGCCACAGGCAGCCGA  100

seq1  TCAGAGGACAGGCTTTGTCAGCTAGCCCAGTGCCATTAACCTTTCCCGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGACAGGCTTTGTCAGCTAGCCCAGTGCCATTAACCTTTCCCGGA  150

seq1  GCTTAGCCAAAAGCTCAAGTTTTCCCAATTAATTCTACATATTTCACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGCCAAAAGCTCAAGTTTTCCCAATTAATTCTACATATTTCACATG  200

seq1  ACTCCAATACCAAGCTCTGACTTATCAGAAGGGCCCAAGGGAAAGGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAATACCAAGCTCTGACTTATCAGAAGGGCCCAAGGGAAAGGTGCA  250

seq1  GCTATGAAATAGAGAGCTGACTCCACACCAACAAAACAATACTGGATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGAAATAGAGAGCTGACTCCACACCAACAAAACAATACTGGATTCC  300

seq1  AGCCTGCAGGACACAGAGCAGCTGTCCTAGCAAGTACCAAGGCTTTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCAGGACACAGAGCAGCTGTCCTAGCAAGTACCAAGGCTTTCTGT  350

seq1  TGGATTTCATTAATAATACTAATAATTATTATTATTAATTAATAATAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCATTAATAATACTAATAATTATTATTATTAATTAATAATAATT  400

seq1  AATGATAATAATAGCAGCCAGAACAAACATCACCTGAAACCTCCGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAATAATAGCAGCCAGAACAAACATCACCTGAAACCTCCGAAAGA  450

seq1  GTCACCGTAATAAACACGCCCTACTTACTCACACACAGAGCAATGGGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCGTAATAAACACGCCCTACTTACTCACACACAGAGCAATGGGGAT  500

seq1  TCCAGTGCTCCTGGCCACTCCGGGAGGAAGCGCCTTCTGCCTTCTGTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGCTCCTGGCCACTCCGGGAGGAAGCGCCTTCTGCCTTCTGTCCC  550

seq1  TGCCAGCACCTAGTGCGTGCCCAGCACCAACCGTACACTGGACAGGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCACCTAGTGCGTGCCCAGCACCAACCGTACACTGGACAGGAGGA  600

seq1  AAGAGAAGATTTCACAGGGAATCCGAGGGCTCACGAAGGACCCGTGCGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGATTTCACAGGGAATCCGAGGGCTCACGAAGGACCCGTGCGCT  650

seq1  ATCACACGTACATCACGGCCAAGTCAAGCACATAGATAGCCCCATCTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACGTACATCACGGCCAAGTCAAGCACATAGATAGCCCCATCTTAC  700

seq1  TAGGTAAACTGAAAATGACATCTGACCCAGAAAGGGGGGT-GGGGGTGGG  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAGGTAAACTGAAAATGACATCTGACCCAGAAAGGGGGGTGGGGGGTGGG  750

seq1  GACCCAACCAGATAGAGCACAATTCTTCTTATGTGCCCTACTATGACCTC  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GACCCAACCAGATAGAGCACAATTCTTCTTATGTG-CCTACTATGACCTC  799

seq1  TGGATTTTTTTCTTTGTTTGAGTCTCTGATACTTTTGGTCCACATTGTGA  849
      ||||||||||||||  |||||||||||||||||||||| |||||||||||
seq2  TGGATTTTTTTCTTGTTTTGAGTCTCTGATACTTTTGG-CCACATTGTGA  848

seq1  TAAGTAGTAGGTGGGCAACAGCTGTGGCCTCAGTGCCATGGAATCTCAGA  899
      ||||||| | ||||||||||||||||||||| ||||| ||||||||||||
seq2  TAAGTAG-ATGTGGGCAACAGCTGTGGCCTCTGTGCC-TGGAATCTCAGA  896

seq1  GATGGGAAATAACTCCATAGGAAGGTGCCTGGGA  933
      || ||||||||||| | |||||||| ||||||||
seq2  GA-GGGAAATAACT-CTTAGGAAGG-GCCTGGGA  927