BAC Information

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BAC

Clone NameB6Ng01-148J20
Chromosome4 (Build37)
Map Location 109,462,110 - 109,614,942
singlet/doubletdoublet
Overlap geneFaf1
Upstream geneBtf3l4, Txndc12, Kti12, Rab3b, Nrd1, Osbpl9, Calr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307
Downstream geneDmrta2, Elavl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148J20.bB6Ng01-148J20.g
ACCDH945169DH945170
length1,1001,147
definitionDH945169|Mus musculus domesticus DNA, BAC clone: B6Ng01-148J20, 5' end.DH945170|Mus musculus domesticus DNA, BAC clone: B6Ng01-148J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,613,843 - 109,614,942)(109,462,110 - 109,463,272)
sequence
gaattcactgtcttttaaagctgtaagcccttcacacacattctacctcc
agtcactcatctactcttaccattgttctctcaaagacagtaaaatgaaa
gttcagtagagctaagtaaactgtccagtgtgagagtggggttcagattc
aaatctaattgccatcacatctttacctccatgatactctgtgtcctctc
agtaaacgcccctgtgcatggctctgtcccactcacctttgcatgatgcc
tctcttactactaaagaacctggtcctctgtcacagcagtgagtttgttt
acagtaatggacaggtcctagtaggaagccatgtgctacttttagaaaaa
tgacctaacaggcgaatctctgtgagttcatggccagcctggtctacaga
gtgagtttcaagtcagccaggactatacagagatcctgtcttgaaaaaca
aaaccaaaaaccaaaacaaaaaaaaccaaacaacaacaacaacaacaaca
acacccaaaacaaaaacaagccaggaaacccaacaaccacaaaaaaagaa
aactgacctaaacaagaaacaggcctttatccaaatgattcctcatagac
tgctgtctttagtggttttgattatttaaggaaaccgagtcctgagcagt
aaaaaccaggttttatttacaaatatgtaactttctgcatgtgccttttg
aagttttctaattatcacattggttaaatgaatattatctcacaatgacc
tgtgatcctatcctaatcaagaggtttaaacctttgaaatttctgacaaa
tgttcctaaatcaaaacctaaattaagtctttcggacctcagactaattt
ggggatatttcaaagagcactggaatatctcaaagtatctgtagaactaa
tgagaaacactttcaattaacaatgatattaatcaaagatagttatcttt
acatagattgtattattgtcttctaaaagttgaaagaaatgcccaggaat
gtgaaataatccaccagtcaacatttattaacatgcaatagaaacaaaaa
tgcaggctattgataccttgagattaccccattggaattagataaagacg

gaattctctaacacaggccagccctgggggaagggggagaagcttgctaa
ttaacatttgattactgatgccaccttctcattccccttgcaccatccgc
tttcaaacgtttttttttttttgttgttgttgttgttgttcaggaaggat
ttttagctgggtttaacttgcatcttagtaaaacaaatccatgtgcaact
gcagtgcatgtacagtatgttacaaaggagcaaaaggaaaggcattagat
atgtagtgtgtgctcagagcccgttctgaatcagaagtgactggtttctt
agctccacaagcctttcagggcaccatggatgcaggagactggaactcag
cctggtctgtgtgccttgttttcatttaaaacagaccactgcaaacactt
acttgttccatgtagttgcagctcatagtttgatatattttaaatttgga
taagcttaggttctactgtctctagaggccttttgttctagtaacagtgg
caggaaaatcacatgggtgcctgtcctttcatgatactgcttggaaagac
aatactgtgtgttagtgttttaattcagagaatccagaaccaattaaaag
ctgtttggaacccatatcatttaaatatattttcctaaattaaaatgttt
aataacaacttatgggcccaatttcaaagatttttaatgaagtgaattaa
aaaatgttgtaactgttaaacagtggtctagctagactgggataacggat
tgtcatcagttgaaggtctagttacttcagaaaccagtatgacaggcttt
atttaaaattagatcctatgagatttaaaacatcaattaggtttttgtaa
agtataaacaaagtaaagactcattttatttgttcaagaagaaaaatgta
tttaaatgcttctatatctttatatctcacctgaaataattttatttttc
tctttgataatctgtataatttatgactctactgcttgttcttcatttaa
gaaaattaaagcagagtcttaatgttgtaacttcctcattatggcctttg
tttgcaaaataagcctctttccgcatcagagtactacaataacttaatga
aaccatagggatgtaagcaatgaaaaccgatggattctttattctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_109613843_109614942
seq2: B6Ng01-148J20.b_45_1144 (reverse)

seq1  CGTC-TTATCTAA-TCCAATGGTGTAATCTCAAAGTTATCATAAGCCTGC  48
      |||| |||||||| |||||||| |||||||| ||| |||||  |||||||
seq2  CGTCTTTATCTAATTCCAATGGGGTAATCTC-AAGGTATCAATAGCCTGC  49

seq1  ATTTTTGTTTCTATTGCATG-TAATAAATGTTGACTGGTG--ATATTTCA  95
      |||||||||||||||||||| |||||||||||||||||||   |||||||
seq2  ATTTTTGTTTCTATTGCATGTTAATAAATGTTGACTGGTGGATTATTTCA  99

seq1  CATTTCTTGGCATTTCTTTCAACTTTTAGAAGACAATAATAACAAATCTA  145
      |||| || |||||||||||||||||||||||||||||||||   ||||||
seq2  CATTCCTGGGCATTTCTTTCAACTTTTAGAAGACAATAATA--CAATCTA  147

seq1  TGTAAAGATAACTATCTTTGATTAAATATCATTGTTAATTGAAAGTGTTT  195
      ||||||||||||||||||||||| ||||||||||||||||||||||| ||
seq2  TGTAAAGATAACTATCTTTGATT-AATATCATTGTTAATTGAAAGTG-TT  195

seq1  TCTCATTAGTTCTACAGATACTTTGAGATATTCCAGTGCTCTTTGAAATA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTAGTTCTACAGATACTTTGAGATATTCCAGTGCTCTTTGAAATA  245

seq1  TCCCCAAATTAGTCTGAGGTCCGAAAGACTTAATTTAGGTTTTGATTTAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAATTAGTCTGAGGTCCGAAAGACTTAATTTAGGTTTTGATTTAG  295

seq1  GAACATTTGTCAGAAATTTCAAAGGTTTAAACCTCTTGATTAGGATAGGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTGTCAGAAATTTCAAAGGTTTAAACCTCTTGATTAGGATAGGA  345

seq1  TCACAGGTCATTGTGAGATAATATTCATTTAACCAATGTGATAATTAGAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGTCATTGTGAGATAATATTCATTTAACCAATGTGATAATTAGAA  395

seq1  AACTTCAAAAGGCACATGCAGAAAGTTACATATTTGTAAATAAAACCTGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAAAAGGCACATGCAGAAAGTTACATATTTGTAAATAAAACCTGG  445

seq1  TTTTTACTGCTCAGGACTCGGTTTCCTTAAATAATCAAAACCACTAAAGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTGCTCAGGACTCGGTTTCCTTAAATAATCAAAACCACTAAAGA  495

seq1  CAGCAGTCTATGAGGAATCATTTGGATAAAGGCCTGTTTCTTGTTTAGGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTCTATGAGGAATCATTTGGATAAAGGCCTGTTTCTTGTTTAGGT  545

seq1  CAGTTTTCTTTTTTTGTGGTTGTTGGGTTTCCTGGCTTGTTTTTGTTTTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTCTTTTTTTGTGGTTGTTGGGTTTCCTGGCTTGTTTTTGTTTTG  595

seq1  GGTGTTGTTGTTGTTGTTGTTGTTGTTTGGTTTTTTTTGTTTTGGTTTTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTGTTGTTGTTGTTGTTGTTGTTTGGTTTTTTTTGTTTTGGTTTTT  645

seq1  GGTTTTGTTTTTCAAGACAGGATCTCTGTATAGTCCTGGCTGACTTGAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGTTTTTCAAGACAGGATCTCTGTATAGTCCTGGCTGACTTGAAA  695

seq1  CTCACTCTGTAGACCAGGCTGGCCATGAACTCACAGAGATTCGCCTGTTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTGTAGACCAGGCTGGCCATGAACTCACAGAGATTCGCCTGTTA  745

seq1  GGTCATTTTTCTAAAAGTAGCACATGGCTTCCTACTAGGACCTGTCCATT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTTTTCTAAAAGTAGCACATGGCTTCCTACTAGGACCTGTCCATT  795

seq1  ACTGTAAACAAACTCACTGCTGTGACAGAGGACCAGGTTCTTTAGTAGTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAACAAACTCACTGCTGTGACAGAGGACCAGGTTCTTTAGTAGTA  845

seq1  AGAGAGGCATCATGCAAAGGTGAGTGGGACAGAGCCATGCACAGGGGCGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGCATCATGCAAAGGTGAGTGGGACAGAGCCATGCACAGGGGCGT  895

seq1  TTACTGAGAGGACACAGAGTATCATGGAGGTAAAGATGTGATGGCAATTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAGAGGACACAGAGTATCATGGAGGTAAAGATGTGATGGCAATTA  945

seq1  GATTTGAATCTGAACCCCACTCTCACACTGGACAGTTTACTTAGCTCTAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAATCTGAACCCCACTCTCACACTGGACAGTTTACTTAGCTCTAC  995

seq1  TGAACTTTCATTTTACTGTCTTTGAGAGAACAATGGTAAGAGTAGATGAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTCATTTTACTGTCTTTGAGAGAACAATGGTAAGAGTAGATGAG  1045

seq1  TGACTGGAGGTAGAATGTGTGTGAAGGGCTTACAGCTTTAAAAGACAGTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGAGGTAGAATGTGTGTGAAGGGCTTACAGCTTTAAAAGACAGTG  1095

seq1  AATTC  1100
      |||||
seq2  AATTC  1100

seq1: chr4_109462110_109463272
seq2: B6Ng01-148J20.g_68_1214

seq1  GAATTCTCTAACACAGGCCAGCCCTGGGGGAAGGGGGAGAAGCTTGCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAACACAGGCCAGCCCTGGGGGAAGGGGGAGAAGCTTGCTAA  50

seq1  TTAACATTTGATTACTGATGCCACCTTCTCATTCCCCTTGCACCATCCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTTGATTACTGATGCCACCTTCTCATTCCCCTTGCACCATCCGC  100

seq1  TTTCAAACGTTTTTTTTTTTTTGTTGTTGTTGTTGTTGTTCAGGAAGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACGTTTTTTTTTTTTTGTTGTTGTTGTTGTTGTTCAGGAAGGAT  150

seq1  TTTTAGCTGGGTTTAACTTGCATCTTAGTAAAACAAATCCATGTGCAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCTGGGTTTAACTTGCATCTTAGTAAAACAAATCCATGTGCAACT  200

seq1  GCAGTGCATGTACAGTATGTTACAAAGGAGCAAAAGGAAAGGCATTAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCATGTACAGTATGTTACAAAGGAGCAAAAGGAAAGGCATTAGAT  250

seq1  ATGTAGTGTGTGCTCAGAGCCCGTTCTGAATCAGAAGTGACTGGTTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTGTGTGCTCAGAGCCCGTTCTGAATCAGAAGTGACTGGTTTCTT  300

seq1  AGCTCCACAAGCCTTTCAGGGCACCATGGATGCAGGAGACTGGAACTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCACAAGCCTTTCAGGGCACCATGGATGCAGGAGACTGGAACTCAG  350

seq1  CCTGGTCTGTGTGCCTTGTTTTCATTTAAAACAGACCACTGCAAACACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTGTGTGCCTTGTTTTCATTTAAAACAGACCACTGCAAACACTT  400

seq1  ACTTGTTCCATGTAGTTGCAGCTCATAGTTTGATATATTTTAAATTTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTCCATGTAGTTGCAGCTCATAGTTTGATATATTTTAAATTTGGA  450

seq1  TAAGCTTAGGTTCTACTGTCTCTAGAGGCCTTTTGTTCTAGTAACAGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTAGGTTCTACTGTCTCTAGAGGCCTTTTGTTCTAGTAACAGTGG  500

seq1  CAGGAAAATCACATGGGTGCCTGTCCTTTCATGATACTGCTTGGAAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAATCACATGGGTGCCTGTCCTTTCATGATACTGCTTGGAAAGAC  550

seq1  AATACTGTGTGTTAGTGTTTTAATTCAGAGAATCCAGAACCAATTAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGTGTGTTAGTGTTTTAATTCAGAGAATCCAGAACCAATTAAAAG  600

seq1  CTGTTTGGAACCCATATCATTTAAATATATTTTCCTAAATTAAAATGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGGAACCCATATCATTTAAATATATTTTCCTAAATTAAAATGTTT  650

seq1  AATAACAACTTATGGGCCCAATTTCAAAGATTTTTAATGAAGTGAATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAACTTATGGGCCCAATTTCAAAGATTTTTAATGAAGTGAATTAA  700

seq1  AAAATGTTGTAACTGTTAAACAGTGGTCTAGCTAGACTGGGATAACGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTGTAACTGTTAAACAGTGGTCTAGCTAGACTGGGATAACGGAT  750

seq1  TGTCATCAGTTGAAGGTCTAGTTACTTCAGAAACCAGTATGACAGGCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCAGTTGAAGGTCTAGTTACTTCAGAAACCAGTATGACAGGCTTT  800

seq1  ATTTAAAATTAGATCCTATGAGATTTAAAACATCAATTAGGTTTTTGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATTTAAAATTAGATCCTATGAGATTTAAAACATCAATTAGGTTTTTG-TA  849

seq1  AGGTATAAACAAAGTAAAGACTCAATTTTATTTGTTCAAGAAGAAAAAAT  900
      | ||||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  AAGTATAAACAAAGTAAAGACTC-ATTTTATTTGTTCAAGAAG-AAAAAT  897

seq1  GTATTTAAAATGCTTCTATATCTTTATATCTCACCTGAAATAATTTTTAT  950
      |||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  GTATTT-AAATGCTTCTATATCTTTATATCTCACCTGAAATAA-TTTTAT  945

seq1  TTTTCTCTTTGAT-ATCTGTTATATTTATTGACTCTACTGC-TGTTCTTC  998
      ||||||||||||| ||||| |||| ||  |||||||||||| ||||||| 
seq2  TTTTCTCTTTGATAATCTG-TATAATTTATGACTCTACTGCTTGTTCTT-  993

seq1  CATTTAAGAAAATTAAGGCAAGAGTCTTAGTGTTTGTAAACTTCCTCATT  1048
      |||||||||||||||| || ||||||||| || |||| ||||||||||||
seq2  CATTTAAGAAAATTAAAGC-AGAGTCTTAATG-TTGT-AACTTCCTCATT  1040

seq1  ATGGCTTTGTTTTGCATATATTTAGCTCTTTTTCTGCATCCAGGATTAAC  1098
      ||||| ||  |||||  | | | ||| || |||| |||||   || | ||
seq2  ATGGCCTTTGTTTGC--AAAATAAGC-CTCTTTCCGCATC--AGAGT-AC  1084

seq1  TACAATATCTTTATGAAACCATA-GGATGTTATAGCATTGAAAATCAGAA  1147
      ||||||| ||| ||||||||||| ||||||   |||| |||||| | || 
seq2  TACAATAACTTAATGAAACCATAGGGATGT--AAGCAATGAAAA-CCGAT  1131

seq1  GTGATCTTTATTCTCT  1163
      |   ||||||||||||
seq2  GGATTCTTTATTCTCT  1147