BAC Information

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BAC

Clone NameB6Ng01-148P10
Chromosome4 (Build37)
Map Location 90,980,819 - 91,077,158
singlet/doubletdoublet
Overlap geneElavl2, LOC664864
Upstream geneLOC619842, LOC435792, Ppia-ps4_804.1, LOC664840, LOC664848, LOC100042274
Downstream geneLOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-148P10.bB6Ng01-148P10.g
ACCDH945431DH945432
length1,1281,215
definitionDH945431|Mus musculus domesticus DNA, BAC clone: B6Ng01-148P10, 5' end.DH945432|Mus musculus domesticus DNA, BAC clone: B6Ng01-148P10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,980,819 - 90,981,968)(91,075,912 - 91,077,158)
sequence
gaattctcctgtcaaattcacctggtgtcatgaatgagctaggagagcgg
attcctaagcttcaattccatcagatagagagagagcagacctatccaag
tcagagccatagcagtgtgacgagatgatcattcattccaaggctcctac
caaggctggctcagtgtgcccaacattctactcctctgctgtgtgtgcca
ccctcataccagttcccaggctggcaatctggctcagtggtaccacactg
gtctatcatgacttaagcctgagagtatgaaaactaccactgcattaagg
gggtggagaattaagtaaaagtgatatgaactctcagacttatagcctct
ccaatggcccttcctcatctcaagtcacattaacttttccagggagcttt
tcctaaaccatcaacagccacctgtgacctatcagatcaaacacgaggta
cactacagacactgagcaccctgcatcctttattattaccagctttggca
tctgagccttctttgtccctcaaacaagcccagtgccttactctcttgct
ttgctgatggtctccctttgaaagatctgtaccagggaacaagagcagtt
tcttcagagtttagggatttgaaagggtgaatcacaccatctttaatata
tgtaaactcaacagtttgtttttctgccttgcctcaaatatttcacaaca
aacataacaatgaaagaacactttccattttgggagcattccaccagtta
ccttcactccctgaaatacacattggtattacaggccttagcaaaggaaa
ccatttatctctgaagtgaacaggtgtgtgatttctacatcaagaacatt
tgccaactataaaaactcaaaagtcaaacaaatcctgaaatatggcacag
gtaagtttcatgcctctgtccagttatgaggttatgaagatagaccatgt
gggcttttgggatcacttagcaaatggtcaaagccagagacagagcaagc
aaagaaattaatttgatacaaagaattcagaatcatatagttacaggtct
aaatggtttatttgaactggctagaagctaggcaaatacaaatgatgttc
tctaaaagaatcatcgcttataggcaag
gaattccaaagacatagcttcaaatgccagggaaggactgcctcagcagc
aggatggatgaaatcatcagcaaaagtaggaacaagtaggcaaaaagcaa
aagcattcttctcctatgtcctttcaagtgggttactatcagacgttgtg
gtccaagcttaaggtggctcttctcaccccaactgagccaatcagaagaa
tctttcacaactgtgcctacctgcttgggatttagttgactccagatgta
gccaagttgacaaccaggactagtcatcactgccactatccaattctttt
tggaaatgccctcaaagataccctaagagctctgcactttagcaatttcc
ttgacatctcttcaaacctgtaatcctctggcttctacttctaaagtgct
tggattagaagctgtcactacatgcccagtccaactgttgtttggttttg
ttgtttataattcctacacagaaagactggacaagatgccatgaaccttt
aaataatagtgttttactctagcaaatgttctcatctgaaactttcatgg
aatggatttgtctggaagtgtagtttgaaaaatatccctgggtggctctg
tcacatgctacctcctgcacacattgtactaccagacggaataatgcatc
cctctatatgttgaactacacagaaagaactctgagcacccagtgtggca
ggaaccagggaaagatggttcatactccaggaaaccaaaatcaaagatta
agtagagaagccagaaaatgaaaaagagcatagacatttgttagaaaata
gatacagaatctgaaatgaaacatatttagtgcccaccaccttccttccc
cactaattcttggagaggcaggcaatgaaataacctggaagacactgcag
aagctgaatcttacagagaaagcagttcggactgtggacacagctccaga
gacgaatgtagaccttaaagttgagactatcaaatgctcatcatttccca
ctctgacctttgcccttgagcgctgagcaggtgtggaaatcgtacatcat
acagctcccagcagacactgtgaagcaacagcaaatttctgttaagctgt
aagagaaatccagccaagcttgactgaccttgcctcacaaagtttggtat
gaacgtagtaagtccttgttacgattaaagacaccagaagtgagtgtgtg
caaggatatcactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_90980819_90981968
seq2: B6Ng01-148P10.b_44_1171

seq1  GAATTCTCCTGTCAAATTCACCTGGTGTCATGAATGAGCTAGGAGAGCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGTCAAATTCACCTGGTGTCATGAATGAGCTAGGAGAGCGG  50

seq1  ATTCCTAAGCTTCAATTCCATCAGATAGAGAGAGAGCAGACCTATCCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAAGCTTCAATTCCATCAGATAGAGAGAGAGCAGACCTATCCAAG  100

seq1  TCAGAGCCATAGCAGTGTGACGAGATGATCATTCATTCCAAGGCTCCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCCATAGCAGTGTGACGAGATGATCATTCATTCCAAGGCTCCTAC  150

seq1  CAAGGCTGGCTCAGTGTGCCCAACATTCTACTCCTCTGCTGTGTGTGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTGGCTCAGTGTGCCCAACATTCTACTCCTCTGCTGTGTGTGCCA  200

seq1  CCCTCATACCAGTTCCCAGGCTGGCAATCTGGCTCAGTGGTACCACACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATACCAGTTCCCAGGCTGGCAATCTGGCTCAGTGGTACCACACTG  250

seq1  GTCTATCATGACTTAAGCCTGAGAGTATGAAAACTACCACTGCATTAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATCATGACTTAAGCCTGAGAGTATGAAAACTACCACTGCATTAAGG  300

seq1  GGGTGGAGAATTAAGTAAAAGTGATATGAACTCTCAGACTTATAGCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGAGAATTAAGTAAAAGTGATATGAACTCTCAGACTTATAGCCTCT  350

seq1  CCAATGGCCCTTCCTCATCTCAAGTCACATTAACTTTTCCAGGGAGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGGCCCTTCCTCATCTCAAGTCACATTAACTTTTCCAGGGAGCTTT  400

seq1  TCCTAAACCATCAACAGCCACCTGTGACCTATCAGATCAAACACGAGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAACCATCAACAGCCACCTGTGACCTATCAGATCAAACACGAGGTA  450

seq1  CACTACAGACACTGAGCACCCTGCATCCTTTATTATTACCAGCTTTGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAGACACTGAGCACCCTGCATCCTTTATTATTACCAGCTTTGGCA  500

seq1  TCTGAGCCTTCTTTGTCCCTCAAACAAGCCCAGTGCCTTACTCTCTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCCTTCTTTGTCCCTCAAACAAGCCCAGTGCCTTACTCTCTTGCT  550

seq1  TTGCTGATGGTCTCCCTTTGAAAGATCTGTACCAGGGAACAAGAGCAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGATGGTCTCCCTTTGAAAGATCTGTACCAGGGAACAAGAGCAGTT  600

seq1  TCTTCAGAGTTTAGGGATTTGAAAGGGTGAATCACACCATCTTTAATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGAGTTTAGGGATTTGAAAGGGTGAATCACACCATCTTTAATATA  650

seq1  TGTAAACTCAACAGTTTGTTTTTCTGCCTTGCCTCAAATATTTCACAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACTCAACAGTTTGTTTTTCTGCCTTGCCTCAAATATTTCACAACA  700

seq1  AACATAACAATGAAAGAACACTTTCCATTTTGGGAGCATTCCACCAGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAACAATGAAAGAACACTTTCCATTTTGGGAGCATTCCACCAGTTA  750

seq1  CCTTCACTCCCTGAAATACACATTGGTATTACAGGCCTTAGCAAAGGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACTCCCTGAAATACACATTGGTATTACAGGCCTTAGCAAAGGAAA  800

seq1  CCATTTATCTCTGAAGTGAACAGGTGTGTGATTTCTACATCAAGAACATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTATCTCTGAAGTGAACAGGTGTGTGATTTCTACATCAAGAACATT  850

seq1  TGCCAACTATAAAAACTCAAAAGTCAAAACAAATCCTGAAATATGGCACA  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGCCAACTATAAAAACTCAAAAGTC-AAACAAATCCTGAAATATGGCACA  899

seq1  GGTAAGTTTCATGCCTCTGTCCAG-TATGAGGTTATGAAGATAGACCATG  949
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGTAAGTTTCATGCCTCTGTCCAGTTATGAGGTTATGAAGATAGACCATG  949

seq1  TGGGCTTTTGGGATCACTTAGCAAAATGGTCAAAAGCCAAGAGAACAGAA  999
      |||||||||||||||||||||| |||||||| |||||| |||| ||||| 
seq2  TGGGCTTTTGGGATCACTTAGC-AAATGGTC-AAAGCC-AGAG-ACAGA-  994

seq1  GCCAAGCCAAAAGAAAATAAATTTTGATACAAAAGAATTCAGAAATCCAT  1049
        |||||  ||||||| |||  |||||||| ||||||||||||     ||
seq2  -GCAAGC--AAAGAAATTAA--TTTGATAC-AAAGAATTCAGA-----AT  1033

seq1  TATTAAGTTACAGGTCTTAAATGGTTTTAATTTGATACTGGCTAGGAAGG  1099
       ||  ||||||||||| ||||||||||  |||||| |||||||||  | |
seq2  CATATAGTTACAGGTC-TAAATGGTTT--ATTTGA-ACTGGCTAG--AAG  1077

seq1  CTAGGCAAATACAAATGATGTCTCTAAAAAAGAATCATCGC-TAAAGGCA  1148
      ||||||||||||||||||||| |||  |||||||||||||| || |||||
seq2  CTAGGCAAATACAAATGATGT-TCTCTAAAAGAATCATCGCTTATAGGCA  1126

seq1  AG  1150
      ||
seq2  AG  1128

seq1: chr4_91075912_91077158
seq2: B6Ng01-148P10.g_68_1282 (reverse)

seq1  AGAGTG-GATCCTTGCACACA-TCACTTGTGTTCTTTATAAATTTGATAC  48
      ||||||  ||||||||||||| |||||| || | | | |||   |  || 
seq2  AGAGTGATATCCTTGCACACACTCACTTCTGGTGTCTTTAA---TCGTA-  46

seq1  ACAAGGGACTATACCTACCTGTTCCTATCACAAACTTTCTGTGAGCAGGT  98
      |||| ||||| || ||||  ||||  ||  |||||||| || |   ||||
seq2  ACAA-GGACT-TA-CTAC--GTTC--ATACCAAACTTTGTGAGGCAAGGT  89

seq1  CAGGTCAGGGCTTGTGCTGGGAATTTCCTCTTTACAGCCTTTTAACAGAC  148
      || ||||  ||||| |||||  |||| ||| |||||||   |||||||| 
seq2  CA-GTCA-AGCTTG-GCTGG--ATTT-CTC-TTACAGC---TTAACAGAA  129

seq1  ATCTGCTGTTGCCTCCACAGTTGGTCCTGCTTGGGAGCTGTATGATGTAC  198
      || |||||||| || ||||||  || |||| |||||||||||||||||||
seq2  ATTTGCTGTTG-CTTCACAGT--GT-CTGC-TGGGAGCTGTATGATGTAC  174

seq1  GATTTTCCACACCCTGCTCAGCGCTTCCAGGGGCAAAGGTCAGAGTGGGA  248
      || |||||||| |||||||||||||  || ||||||||||||||||||||
seq2  GA-TTTCCACA-CCTGCTCAGCGCT--CAAGGGCAAAGGTCAGAGTGGGA  220

seq1  AATGATGAGCATTTGATAGTCTTCAACTTTAAGGTCCTACATTCCTTCTC  298
      ||||||||||||||||||||| ||||||||||||| ||||||| | ||||
seq2  AATGATGAGCATTTGATAGTC-TCAACTTTAAGGT-CTACATT-CGTCTC  267

seq1  TGGAGCTGTGTCCACAGTCCGAACTGCTTTTCTCTGTTAGATTCAGCTTC  348
      ||||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  TGGAGCTGTGTCCACAGTCCGAACTGC-TTTCTCTGTAAGATTCAGCTTC  316

seq1  TGCAGTGTCTTCCAGGTTATTTCATTGCCTGCCTCTCCAAGAATTAGTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGTCTTCCAGGTTATTTCATTGCCTGCCTCTCCAAGAATTAGTGG  366

seq1  GGAAGGAAGGTGGTGGGCACTAAATATGTTTCATTTCAGATTCTGTATCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGTGGTGGGCACTAAATATGTTTCATTTCAGATTCTGTATCT  416

seq1  ATTTTCTAACAAATGTCTATGCTCTTTTTCATTTTCTGGCTTCTCTACTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTAACAAATGTCTATGCTCTTTTTCATTTTCTGGCTTCTCTACTT  466

seq1  AATCTTTGATTTTGGTTTCCTGGAGTATGAACCATCTTTCCCTGGTTCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTGATTTTGGTTTCCTGGAGTATGAACCATCTTTCCCTGGTTCCT  516

seq1  GCCACACTGGGTGCTCAGAGTTCTTTCTGTGTAGTTCAACATATAGAGGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACTGGGTGCTCAGAGTTCTTTCTGTGTAGTTCAACATATAGAGGG  566

seq1  ATGCATTATTCCGTCTGGTAGTACAATGTGTGCAGGAGGTAGCATGTGAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTATTCCGTCTGGTAGTACAATGTGTGCAGGAGGTAGCATGTGAC  616

seq1  AGAGCCACCCAGGGATATTTTTCAAACTACACTTCCAGACAAATCCATTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCACCCAGGGATATTTTTCAAACTACACTTCCAGACAAATCCATTC  666

seq1  CATGAAAGTTTCAGATGAGAACATTTGCTAGAGTAAAACACTATTATTTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAGTTTCAGATGAGAACATTTGCTAGAGTAAAACACTATTATTTA  716

seq1  AAGGTTCATGGCATCTTGTCCAGTCTTTCTGTGTAGGAATTATAAACAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCATGGCATCTTGTCCAGTCTTTCTGTGTAGGAATTATAAACAAC  766

seq1  AAAACCAAACAACAGTTGGACTGGGCATGTAGTGACAGCTTCTAATCCAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAACAACAGTTGGACTGGGCATGTAGTGACAGCTTCTAATCCAA  816

seq1  GCACTTTAGAAGTAGAAGCCAGAGGATTACAGGTTTGAAGAGATGTCAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTAGAAGTAGAAGCCAGAGGATTACAGGTTTGAAGAGATGTCAAG  866

seq1  GAAATTGCTAAAGTGCAGAGCTCTTAGGGTATCTTTGAGGGCATTTCCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGCTAAAGTGCAGAGCTCTTAGGGTATCTTTGAGGGCATTTCCAA  916

seq1  AAAGAATTGGATAGTGGCAGTGATGACTAGTCCTGGTTGTCAACTTGGCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTGGATAGTGGCAGTGATGACTAGTCCTGGTTGTCAACTTGGCT  966

seq1  ACATCTGGAGTCAACTAAATCCCAAGCAGGTAGGCACAGTTGTGAAAGAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGGAGTCAACTAAATCCCAAGCAGGTAGGCACAGTTGTGAAAGAT  1016

seq1  TCTTCTGATTGGCTCAGTTGGGGTGAGAAGAGCCACCTTAAGCTTGGACC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGATTGGCTCAGTTGGGGTGAGAAGAGCCACCTTAAGCTTGGACC  1066

seq1  ACAACGTCTGATAGTAACCCACTTGAAAGGACATAGGAGAAGAATGCTTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACGTCTGATAGTAACCCACTTGAAAGGACATAGGAGAAGAATGCTTT  1116

seq1  TGCTTTTTGCCTACTTGTTCCTACTTTTGCTGATGATTTCATCCATCCTG  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTGCCTACTTGTTCCTACTTTTGCTGATGATTTCATCCATCCTG  1166

seq1  CTGCTGAGGCAGTCCTTCCCTGGCATTTGAAGCTATGTCTTTGGAATTC  1247
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAGGCAGTCCTTCCCTGGCATTTGAAGCTATGTCTTTGGAATTC  1215