BAC Information

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BAC

Clone NameB6Ng01-149B18
Chromosome4 (Build37)
Map Location 79,648,052 - 79,723,306
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040026, LOC100040036, LOC667922
Downstream geneTyrp1, D4Bwg0951e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149B18.bB6Ng01-149B18.g
ACCDH945537DH945538
length1,2141,053
definitionDH945537|Mus musculus domesticus DNA, BAC clone: B6Ng01-149B18, 5' end.DH945538|Mus musculus domesticus DNA, BAC clone: B6Ng01-149B18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,648,052 - 79,649,281)(79,722,256 - 79,723,306)
sequence
gaattcttagagtaaaattgtcttttgtagaaaagagcacactaattgat
tatctaatactacatagtcaactctaaatgattttgtaaagaaaatatta
taaaaggaatgtaaatctatattttaaaatcgtatcattttgttgttgaa
cttgttcttttagcatttcatgtatgtacgtgaagtacaatagtagttgc
aggaatctttctactggtccgatttcacccactcacaactatcaataatt
atattttaacaactatattatgcctcggagccctaaccacattatttaca
gatatttgtgccctcacccaaaatgacatcaaaaaaattgtcgctttctc
cacatcaagccaactaggcctgataatagtaacactagggataaaccaac
catatttagcatttctacatatctgtacccacgcattcttcaaagccatg
ctctttatatgctctggctcaatcattcatagcctggcagatgaacaaga
aatccgaaaaataggaaacatcacaaaaaccataccattcacctcatcat
gcctagtaatcggaagcttagccctcacaggaatgccattcctaacagga
ttctactcaaaagacttaattattgaagcaattaatacctgcaacaccaa
cgcctgagccctactaattacactaatcaccacttctataacagctatat
acagtatacgaatcacttatttcgtaacaataacaaaaccacgttttcct
cccctaatctccattaacgaaaatgacccagacctcataaacccaatcaa
acgcctagcattcggaagcatctttgcaggatttgtcatctcatacaaca
tcccaccaaccaacatcccagtcctcacaataccatgatttttaaaaacc
gcagccctagttatttcagtattaggatttctaattgcactagaactaaa
caacctgaccataaaatatcataagtaaaacaaactcataactcatcttt
ctcaactttactagcttttttccatctattattcaccgcatcatacccat
aaaatctctcactaagccctaaaaaaatccctactctcctagacttaatt
gactagaaaaaaaccattcaaatctacctcactcctcccccaaactaacc
actcttaacaccaccaaaagggctggataagtaactttatatcattctta
ataacatatcttaa
gaattcaactccattcaatcaggaattgagactagtatttgccaaatgag
atttcacaaaattgttttgaagatatattctatacctaagttgtaccact
tcatgtgcagagagattagagtgaattaaaactgaaaaagaagctagacg
tggtggagcacacctttaatcccagcacttgggaggcagaggcaggtgaa
tttctgagtttgaggccagcctggtctacagagtgagttccaggacagcc
agggctacacagacacagagaaacagtgtctccaaaaacaacaacaacaa
caacaacaaaaaaaagaacaacaacaacaacaacaaaaccaaagaaacaa
acaaaaaccaaacaaaactgaaaaagaagagagtctaataaacacaagca
tttgtatttttttttcttcacaattatccactctgatcggccagttcaaa
tttctattcctatgttttagaattgccacaagcctgagtcaaaataagca
tttctttattttgttttttttttttctgtcagttattttgtttcaaaaat
taaaaaaaaaaagtgcatatagaagattggtaccaaccaactgggccatt
gctgcaactatctgaccacaggatttgtagccctttcctgaatgacagga
gaaatttgaacaagtttacaggcatcaattacagaagcccttgaatgtta
ttagcagagcttactgggtcattttagtaggactatggaagactagcatg
cctacagaaataaggactgtgaaatttccattcacatagtttcagatgag
taaaatacttgtgaattggaaaagagatcattaatgataaattattgtaa
cagcctctgcctgtgtcctgagagcctaatgagcctgaaatcaaagtagt
ggactgaattgtcagagcatatttagacagtatagcatacaaattggaaa
aggtgaagtcaaatatcacttttgcaatgattgatagtatatatagtgac
ctaaaattctacgaggactcctaaactgataaacagctcagtgaatagct
gga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_79648052_79649281
seq2: B6Ng01-149B18.b_45_1258

seq1  GAATTCTTAGAGTAAAATTGTCTTTTGTAGAAAAGAGCACACTAATTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAGTAAAATTGTCTTTTGTAGAAAAGAGCACACTAATTGAT  50

seq1  TATCTAATACTACATAGTCAACTCTAAATGATTTTGTAAAGAAAATATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAATACTACATAGTCAACTCTAAATGATTTTGTAAAGAAAATATTA  100

seq1  TAAAAGGAATGTAAATCTATATTTTAAAATCGTATCATTTTGTTGTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGAATGTAAATCTATATTTTAAAATCGTATCATTTTGTTGTTGAA  150

seq1  CTTGTTCTTTTAGCATTTCATGTATGTACGTGAAGTACAATAGTAGTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCTTTTAGCATTTCATGTATGTACGTGAAGTACAATAGTAGTTGC  200

seq1  AGGAATCTTTCTACTGGTCCGATTTCACCCACTCACAACTATCAATAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCTTTCTACTGGTCCGATTTCACCCACTCACAACTATCAATAATT  250

seq1  ATATTTTAACAACTATATTATGCCTCGGAGCCCTAACCACATTATTTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAACAACTATATTATGCCTCGGAGCCCTAACCACATTATTTACA  300

seq1  GATATTTGTGCCCTCACCCAAAATGACATCAAAAAAATTGTCGCTTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTGTGCCCTCACCCAAAATGACATCAAAAAAATTGTCGCTTTCTC  350

seq1  CACATCAAGCCAACTAGGCCTGATAATAGTAACACTAGGGATAAACCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAAGCCAACTAGGCCTGATAATAGTAACACTAGGGATAAACCAAC  400

seq1  CATATTTAGCATTTCTACATATCTGTACCCACGCATTCTTCAAAGCCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTAGCATTTCTACATATCTGTACCCACGCATTCTTCAAAGCCATG  450

seq1  CTCTTTATATGCTCTGGCTCAATCATTCATAGCCTGGCAGATGAACAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTATATGCTCTGGCTCAATCATTCATAGCCTGGCAGATGAACAAGA  500

seq1  AATCCGAAAAATAGGAAACATCACAAAAACCATACCATTCACCTCATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCGAAAAATAGGAAACATCACAAAAACCATACCATTCACCTCATCAT  550

seq1  GCCTAGTAATCGGAAGCTTAGCCCTCACAGGAATGCCATTCCTAACAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTAATCGGAAGCTTAGCCCTCACAGGAATGCCATTCCTAACAGGA  600

seq1  TTCTACTCAAAAGACTTAATTATTGAAGCAATTAATACCTGCAACACCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTCAAAAGACTTAATTATTGAAGCAATTAATACCTGCAACACCAA  650

seq1  CGCCTGAGCCCTACTAATTACACTAATCACCACTTCTATAACAGCTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGAGCCCTACTAATTACACTAATCACCACTTCTATAACAGCTATAT  700

seq1  ACAGTATACGAATCACTTATTTCGTAACAATAACAAAACCACGTTTTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATACGAATCACTTATTTCGTAACAATAACAAAACCACGTTTTCCT  750

seq1  CCCCTAATCTCCATTAACGAAAATGACCCAGACCTCATAAACCCAATCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAATCTCCATTAACGAAAATGACCCAGACCTCATAAACCCAATCAA  800

seq1  ACGCCTAGCATTCGGAAGCATCTTTGCAGGATTTGTCATCTCATACAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTAGCATTCGGAAGCATCTTTGCAGGATTTGTCATCTCATACAACA  850

seq1  TCCCACCAACCAACATCCCAGTCCTCACAATACCATGATTTTTAAAAACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCAACCAACATCCCAGTCCTCACAATACCATGATTTTTAAAAACC  900

seq1  GCAGCCCTAGTTATTTCAGTATTAGGATTTCTAATTGCACTAGAACTAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCTAGTTATTTCAGTATTAGGATTTCTAATTGCACTAGAACTAAA  950

seq1  CAACCTGACCATAAAATTATCAATAAGTAAAACAAACTCAT-ACTCATCT  999
      |||||||||||||||| |||| ||||||||||||||||||| ||||||||
seq2  CAACCTGACCATAAAA-TATC-ATAAGTAAAACAAACTCATAACTCATCT  998

seq1  TTCTCAACTTTACTAGGCTTTTTTCCATCTATTATTCACCGCATCATACC  1049
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTCTCAACTTTACTA-GCTTTTTTCCATCTATTATTCACCGCATCATACC  1047

seq1  CATAAAATCTCTCAACCTAAG-CCTAAAAACATCCCTAACTCTCCTAGAC  1098
      ||||||||||||||  ||||| |||||||| |||||| ||||||||||||
seq2  CATAAAATCTCTCA--CTAAGCCCTAAAAAAATCCCT-ACTCTCCTAGAC  1094

seq1  TTAATTTGACTAGAAAAAAAACCATTCCAAAATCTACCTCAACTCTCCAC  1148
      |||| |||||||| |||||||||||||  ||||||||||| ||||  | |
seq2  TTAA-TTGACTAG-AAAAAAACCATTC--AAATCTACCTC-ACTCCTCCC  1139

seq1  ACAAACATAACCACTCTAACAACCAACCAAAAAGGCTTGATTAAATTATA  1198
       ||||| |||||||||| |  ||| ||||||| |||| |||  || || |
seq2  CCAAAC-TAACCACTCTTAACACC-ACCAAAAGGGCTGGAT--AAGTA-A  1184

seq1  CTTTATATCATTCCTAATTAACATTATCTTAA  1230
      ||||||||||||| ||| ||||| ||||||||
seq2  CTTTATATCATTCTTAA-TAACA-TATCTTAA  1214

seq1: chr4_79722256_79723306
seq2: B6Ng01-149B18.g_85_1119 (reverse)

seq1  TCCAGCTATTTCACTGAAGCTGTTTATCAGGTTTAGGAGTTCTCTGGTAG  50
      |||||||| ||||||| |||||||||||| |||||||||| |||  ||||
seq2  TCCAGCTA-TTCACTG-AGCTGTTTATCA-GTTTAGGAGTCCTC--GTAG  45

seq1  AATTTTTAGGGTCACTTATATATACTATCATATCATTTGCAAAAAGTGAT  100
      ||||||   |||||| |||||||||||||| |||| |||| |||||||||
seq2  AATTTT--AGGTCAC-TATATATACTATCA-ATCA-TTGC-AAAAGTGAT  89

seq1  ATTTTGACTTCACCTTTTCCAATTTGTATTGCCTATACTGTCTTAAATAT  150
      | |||||||||||||||||||||||||||   |||||||||| |||||||
seq2  A-TTTGACTTCACCTTTTCCAATTTGTAT--GCTATACTGTC-TAAATAT  135

seq1  GCTCTGACAATTCAGTCCACTACTTTGATTTCAGGCTCATTAGGCTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGACAATTCAGTCCACTACTTTGATTTCAGGCTCATTAGGCTCTCA  185

seq1  GGACACAGGCAGAGGCTGTTTACAATAATTTATCATTAATGATCTCTTTT  250
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGACACAGGCAGAGGCTG-TTACAATAATTTATCATTAATGATCTCTTTT  234

seq1  CCAATTCACAAGTATTTTACTCATCTGAAACTATGTGAATGGAAATTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCACAAGTATTTTACTCATCTGAAACTATGTGAATGGAAATTTCA  284

seq1  CAGTCCTTATTTCTGTAGGCATGCTAGTCTTCCATAGTCCTACTAAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTTATTTCTGTAGGCATGCTAGTCTTCCATAGTCCTACTAAAATG  334

seq1  ACCCAGTAAGCTCTGCTAATAACATTCAAGGGCTTCTGTAATTGATGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTAAGCTCTGCTAATAACATTCAAGGGCTTCTGTAATTGATGCCT  384

seq1  GTAAACTTGTTCAAATTTCTCCTGTCATTCAGGAAAGGGCTACAAATCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTTGTTCAAATTTCTCCTGTCATTCAGGAAAGGGCTACAAATCCT  434

seq1  GTGGTCAGATAGTTGCAGCAATGGCCCAGTTGGTTGGTACCAATCTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCAGATAGTTGCAGCAATGGCCCAGTTGGTTGGTACCAATCTTCTA  484

seq1  TATGCACTTTTTTTTTTTAATTTTTGAAACAAAATAACTGACAGAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACTTTTTTTTTTTAATTTTTGAAACAAAATAACTGACAGAAAAAA  534

seq1  AAAAAACAAAATAAAGAAATGCTTATTTTGACTCAGGCTTGTGGCAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAAATAAAGAAATGCTTATTTTGACTCAGGCTTGTGGCAATTC  584

seq1  TAAAACATAGGAATAGAAATTTGAACTGGCCGATCAGAGTGGATAATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATAGGAATAGAAATTTGAACTGGCCGATCAGAGTGGATAATTGT  634

seq1  GAAGAAAAAAAAATACAAATGCTTGTGTTTATTAGACTCTCTTCTTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAAAAAAATACAAATGCTTGTGTTTATTAGACTCTCTTCTTTTTC  684

seq1  AGTTTTGTTTGGTTTTTGTTTGTTTCTTTGGTTTTGTTGTTGTTGTTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGTTTGGTTTTTGTTTGTTTCTTTGGTTTTGTTGTTGTTGTTGTT  734

seq1  GTTCTTTTTTTTGTTGTTGTTGTTGTTGTTGTTTTTGGAGACACTGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTTTTTTGTTGTTGTTGTTGTTGTTGTTTTTGGAGACACTGTTTC  784

seq1  TCTGTGTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGG  834

seq1  CTGGCCTCAAACTCAGAAATTCACCTGCCTCTGCCTCCCAAGTGCTGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCAAACTCAGAAATTCACCTGCCTCTGCCTCCCAAGTGCTGGGA  884

seq1  TTAAAGGTGTGCTCCACCACGTCTAGCTTCTTTTTCAGTTTTAATTCACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGTGTGCTCCACCACGTCTAGCTTCTTTTTCAGTTTTAATTCACT  934

seq1  CTAATCTCTCTGCACATGAAGTGGTACAACTTAGGTATAGAATATATCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTCTCTGCACATGAAGTGGTACAACTTAGGTATAGAATATATCTT  984

seq1  CAAAACAATTTTGTGAAATCTCATTTGGCAAATACTAGTCTCAATTCCTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAATTTTGTGAAATCTCATTTGGCAAATACTAGTCTCAATTCCTG  1034

seq1  A  1051
      |
seq2  A  1035