BAC Information

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BAC

Clone NameB6Ng01-149B23
Chromosome4 (Build37)
Map Location 153,551,837 - 153,691,290
singlet/doubletdoublet
Overlap geneMegf6, Arhgef16, Prdm16
Upstream geneLOC100042089, Ajap1, BC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik
Downstream geneLOC100043342, LOC100042178, Actrt2, B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358, Plch2, Pex10, Rer1, Morn1, Ski, 2610002J02Rik, Prkcz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149B23.bB6Ng01-149B23.g
ACCDH945546DH945547
length470205
definitionDH945546|Mus musculus domesticus DNA, BAC clone: B6Ng01-149B23, 5' end.DH945547|Mus musculus domesticus DNA, BAC clone: B6Ng01-149B23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,690,815 - 153,691,290)(153,551,837 - 153,552,041)
sequence
tccccagacaaggtcacttcccccatcattccagccattgtctgtctgtc
accaattcacatcctcacttctaggagggggaaaggttgagtctttagat
gtgcgattgatccccttgcaactgggggaagctgggggtttcctcagtgt
ctcccacagcgcagctactctcttcagtgtggggaaaggggggccctggt
gtcagaatacgtaacttaaagcctgtgcgtgtggtggtgcgtggtgtgtg
tgtgtgtgcatgtgtgctgtatgtgtgtactttgaaccaatagtatataa
atataaatataaatatatatatatatccctgacacccgcgagaatctcca
ccctgtatgagagttgccattgttacattcagatcggattcagttcgttt
ctgtttctgtttttgttgttgttgggtttttttttttttccttttagaac
tatatattgttgagaaagga
tcagtgctcttgttgggcctggggttcatagggtgcctgggcctgctctg
cctgaccaaggagctccaggggccgctcgagcgttagtgtgtatttgctg
tccattagggctcgtggaggatagcaatggaaaaagtccttgcccaggat
agcctaggacgcctgtggtaatgtctggatgtgggaagtgatgagggatg
ggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_153690815_153691290
seq2: B6Ng01-149B23.b_47_522 (reverse)

seq1  TCCTTTCTCAACACTATATAGTTCTAAAAGGAAAAAAAAAAAAACCCAAC  50
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTCAACAATATATAGTTCTAAAAGGAAAAAAAAAAAAACCCAAC  50

seq1  AACAACAAAAACAGAAACAGAAACGAACTGAATCCGATCTGAATGTAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAAAAACAGAAACAGAAACGAACTGAATCCGATCTGAATGTAACA  100

seq1  ATGGCAACTCTCATACAGGGTGGAGATTCTCGCGGGTGTCAGGGATATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAACTCTCATACAGGGTGGAGATTCTCGCGGGTGTCAGGGATATAT  150

seq1  ATATATATTTATATTTATATTTATATACTATTGGTTCAAAGTACACACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATTTATATTTATATTTATATACTATTGGTTCAAAGTACACACAT  200

seq1  ACAGCACACATGCACACACACACACACCACGCACCACCACACGCACAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACACATGCACACACACACACACCACGCACCACCACACGCACAGGC  250

seq1  TTTAAGTTACGTATTCTGACACCAGGGCCCCCCTTTCCCCACACTGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTTACGTATTCTGACACCAGGGCCCCCCTTTCCCCACACTGAAGA  300

seq1  GAGTAGCTGCGCTGTGGGAGACACTGAGGAAACCCCCAGCTTCCCCCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGCTGCGCTGTGGGAGACACTGAGGAAACCCCCAGCTTCCCCCAGT  350

seq1  TGCAAGGGGATCAATCGCACATCTAAAGACTCAACCTTTCCCCCTCCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGGGATCAATCGCACATCTAAAGACTCAACCTTTCCCCCTCCTAG  400

seq1  AAGTGAGGATGTGAATTGGTGACAGACAGACAATGGCTGGAATGGTGGGG  450
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGTGAGGATGTGAATTGGTGACAGACAGACAATGGCTGGAATGATGGGG  450

seq1  GAAGTGACCTTGTCTGGGGAGAATTC  476
      ||||||||||||||||||||||||||
seq2  GAAGTGACCTTGTCTGGGGAGAATTC  476

seq1: chr4_153551837_153552041
seq2: B6Ng01-149B23.g_75_279

seq1  TCAGTGCTCTTGTTGGGCCTGGGGTTCATAGGGTGCCTGGGCCTGCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCTCTTGTTGGGCCTGGGGTTCATAGGGTGCCTGGGCCTGCTCTG  50

seq1  CCTGACCAAGGAGCTCCAGGGGCCGCTCGAGCGTTAGTGTGTATTTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCAAGGAGCTCCAGGGGCCGCTCGAGCGTTAGTGTGTATTTGCTG  100

seq1  TCCATTAGGGCTCGTGGAGGATAGCAATGGAAAAAGTCCTTGCCCAGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTAGGGCTCGTGGAGGATAGCAATGGAAAAAGTCCTTGCCCAGGAT  150

seq1  AGCCTAGGACGCCTGTGGTAATGTCTGGATGTGGGAAGTGATGAGGGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGGACGCCTGTGGTAATGTCTGGATGTGGGAAGTGATGAGGGATG  200

seq1  GGGGG  205
      |||||
seq2  GGGGG  205