BAC Information

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BAC

Clone NameB6Ng01-149C22
Chromosome4 (Build37)
Map Location 133,731,339 - 133,880,514
singlet/doubletdoublet
Overlap geneCcdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63
Upstream geneWasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3
Downstream geneSlc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149C22.bB6Ng01-149C22.g
ACCDH945591DH945592
length966991
definitionDH945591|Mus musculus domesticus DNA, BAC clone: B6Ng01-149C22, 5' end.DH945592|Mus musculus domesticus DNA, BAC clone: B6Ng01-149C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,879,881 - 133,880,514)(133,731,339 - 133,732,326)
sequence
gaattctaggcatttttaagctgccagacatgggtcctggggtcctaact
caagtactttgaaagaatagtaagcactcttgaccactgagcatctctcc
agcctctctgggttttgttgatattgtttgtaaaagatctatttttattt
taagtgtatgcatgagtgcctgcatatatgtatgtgtgccacatatgtgc
ctggtggccttggaagtcagaaatgggcattgggtgccctggaactggac
ttatgcatggtcctcagccactgtgtaggtgctgggcactggactcaggt
cctttgcaagaacgaaaccaaagtgttattttggtttgattggtttttgt
ttgtctgtttgtgttttgttttgagacaagttctctctattatgcagctc
tggatatcctggaatttactctgtagaccaggctagcctaaaagttacag
agatctgggctggcaagatggctcagcgggtaagagcactgactgctctt
ccaaaggtcttgagttcaaatcccagcaaccacatggtggctcacaacca
tctgtaatgagatctgacgcactcttctggagtgtctgaagacagctaca
atgtacttacatatgataaataaataaattaaaaaaaaaagttacagaga
tctgcctgtctctgtctcctcagttctgggattaaaagtttttgacacag
gctggggagatggctcaatggataagagcactgactgctcttccagagat
cctgagttcaattcccaacaactacatggtagctcacaaccctctataat
gagatacaatgccctcttctcgtgtgtctgaagacagtgacagcgtactc
atataaattaataaataattaaataaataaataataaataaataaataat
atctttaaaacacaaaaagtttgacacagaaatgttctaaccacagagtc
atctctccatgccata
gaattccagaacagccattgctacacagagaaaaaaataataataaaata
gctaacatttactgtatgtgtgcacaacagcgcacctgtggaagcaagag
gacaaactgtcagggtcagttctgtactttcaccatgcagatgaggatcc
cacttggatggttgggcttgagacaagggcctacatgctagtcacctcac
ccaaactgtgtaggccggaggtagacagcaagtgttttccaccacatttt
ctgaggtaatgtctctttacactgattcagggggactggctggcctacta
cccttacctccaaagtactcgggtcagagacgcatattgctgagcctact
gggaatcccaatccagttcctcgtgatttgtagccagctccctaggtccc
acacagtttttcgtttttcttttcttttcttttcttttcttttcttttct
tttcttttcttttcttttcttttcttttcttttcttttcttttctttcct
ttctttcttttttttttttttccgagacaaggtttctctgtgtagcccta
ggtgtcctggaactcactccgtagaccaagctggcctcgaactcagaaat
ccgcctgcctctgcctctctagtgctgggattaaatgtgttcgccaccac
tgcccggctcacacagtttttcttaagccagtctctgtttctttctttca
aagtactgatacatgaaaactttagggtgagggcataaaccagagtttca
cttatgccaggttggcctcaaacttactaggtagttaaaaatgaccctga
acttgtgatcttcatccctctaattcctgactgcagagatatcagaccta
agaaacatgttttaaatttacaaacaaattattcatactatgattatcat
tctgatgggtatgtgtaccatactgcatgtgtagaaaataagtgggttag
ctatgtggtttgaatacgcttggacccaggagggcactatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_133879881_133880514
seq2: B6Ng01-149C22.b_49_682 (reverse)

seq1  TTTTAATTTATTTATTTATCATATGTAAGTACATTGTAGCTGTCTTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTATTTATTTATCATATGTAAGTACATTGTAGCTGTCTTCAGA  50

seq1  CACTCCAGAAGAGTGCGTCAGATCTCATTACAGATGGTTGTGAGCCACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAGAAGAGTGCGTCAGATCTCATTACAGATGGTTGTGAGCCACCA  100

seq1  TGTGGTTGCTGGGATTTGAACTCAAGACCTTTGGAAGAGCAGTCAGTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGCTGGGATTTGAACTCAAGACCTTTGGAAGAGCAGTCAGTGCT  150

seq1  CTTACCCGCTGAGCCATCTTGCCAGCCCAGATCTCTGTAACTTTTAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCCGCTGAGCCATCTTGCCAGCCCAGATCTCTGTAACTTTTAGGCT  200

seq1  AGCCTGGTCTACAGAGTAAATTCCAGGATATCCAGAGCTGCATAATAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGTCTACAGAGTAAATTCCAGGATATCCAGAGCTGCATAATAGAG  250

seq1  AGAACTTGTCTCAAAACAAAACACAAACAGACAAACAAAAACCAATCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTGTCTCAAAACAAAACACAAACAGACAAACAAAAACCAATCAAA  300

seq1  CCAAAATAACACTTTGGTTTCGTTCTTGCAAAGGACCTGAGTCCAGTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATAACACTTTGGTTTCGTTCTTGCAAAGGACCTGAGTCCAGTGCC  350

seq1  CAGCACCTACACAGTGGCTGAGGACCATGCATAAGTCCAGTTCCAGGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCTACACAGTGGCTGAGGACCATGCATAAGTCCAGTTCCAGGGCA  400

seq1  CCCAATGCCCATTTCTGACTTCCAAGGCCACCAGGCACATATGTGGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGCCCATTTCTGACTTCCAAGGCCACCAGGCACATATGTGGCACA  450

seq1  CATACATATATGCAGGCACTCATGCATACACTTAAAATAAAAATAGATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATATATGCAGGCACTCATGCATACACTTAAAATAAAAATAGATCT  500

seq1  TTTACAAACAATATCAACAAAACCCAGAGAGGCTGGAGAGATGCTCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAACAATATCAACAAAACCCAGAGAGGCTGGAGAGATGCTCAGTG  550

seq1  GTCAAGAGTGCTTACTATTCTTTCAAAGTACTTGAGTTAGGACCCCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGAGTGCTTACTATTCTTTCAAAGTACTTGAGTTAGGACCCCAGGA  600

seq1  CCCATGTCTGGCAGCTTAAAAATGCCTAGAATTC  634
      ||||||||||||||||||||||||||||||||||
seq2  CCCATGTCTGGCAGCTTAAAAATGCCTAGAATTC  634

seq1: chr4_133731339_133732326
seq2: B6Ng01-149C22.g_69_1059

seq1  GAATTCCAGAACAGCCATTGCTACACAGAGAAAAAAATAATAATAAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACAGCCATTGCTACACAGAGAAAAAAATAATAATAAAATA  50

seq1  GCTAACATTTACTGTATGTGTGCACAACAGCGCACCTGTGGAAGCAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACATTTACTGTATGTGTGCACAACAGCGCACCTGTGGAAGCAAGAG  100

seq1  GACAAACTGTCAGGGTCAGTTCTGTACTTTCACCATGCAGATGAGGATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACTGTCAGGGTCAGTTCTGTACTTTCACCATGCAGATGAGGATCC  150

seq1  CACTTGGATGGTTGGGCTTGAGACAAGGGCCTACATGCTAGTCACCTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGATGGTTGGGCTTGAGACAAGGGCCTACATGCTAGTCACCTCAC  200

seq1  CCAAACTGTGTAGGCCGGAGGTAGACAGCAAGTGTTTTCCACCACATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTGTGTAGGCCGGAGGTAGACAGCAAGTGTTTTCCACCACATTTT  250

seq1  CTGAGGTAATGTCTCTTTACACTGATTCAGGGGGACTGGCTGGCCTACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTAATGTCTCTTTACACTGATTCAGGGGGACTGGCTGGCCTACTA  300

seq1  CCCTTACCTCCAAAGTACTCGGGTCAGAGACGCATATTGCTGAGCCTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACCTCCAAAGTACTCGGGTCAGAGACGCATATTGCTGAGCCTACT  350

seq1  GGGAATCCCAATCCAGTTCCTCGTGATTTGTAGCCAGCTCCCTAGGTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCCCAATCCAGTTCCTCGTGATTTGTAGCCAGCTCCCTAGGTCCC  400

seq1  ACACAGTTTTTCGT-----TTTTCTTTTCTTTTCTTTTCTTTTCTTTTCT  445
      ||||||||||||||     |||||||||||||||||||||||||||||||
seq2  ACACAGTTTTTCGTTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCT  450

seq1  TTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTCCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTCCT  500

seq1  TTCTTTCTTTTTTTTTTTTTTCCGAGACAAGGTTTCTCTGTGTAGCCCTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTTTTTTTTTTTTCCGAGACAAGGTTTCTCTGTGTAGCCCTA  550

seq1  GGTGTCCTGGAACTCACTCCGTAGACCAAGCTGGCCTCGAACTCAGAAAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCCTGGAACTCACTCCGTAGACCAAGCTGGCCTCGAACTCAGAAAT  600

seq1  CCGCCTGCCTCTGCCTCTCTAGTGCTGGGATTAAATGTGTTCGCCACCAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTGCCTCTGCCTCTCTAGTGCTGGGATTAAATGTGTTCGCCACCAC  650

seq1  TGCCCGGCTCACACAGTTTTTCTTAAGCCAGTCTCTGTTTCTTTCTTTCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCGGCTCACACAGTTTTTCTTAAGCCAGTCTCTGTTTCTTTCTTTCA  700

seq1  AAGTACTGATACATGAAAACTTTAGGGTGAGGGCATAAACCAGAGTTTCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTGATACATGAAAACTTTAGGGTGAGGGCATAAACCAGAGTTTCA  750

seq1  CTTATGCCAGGTTGGCCTCAAACTTACTAGGTAGTTAAAAATGACCCTGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGCCAGGTTGGCCTCAAACTTACTAGGTAGTTAAAAATGACCCTGA  800

seq1  ACTTGTGATCTTCATCCCTCTAATTCCTGACTGCAGAGATATCAGACCTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGATCTTCATCCCTCTAATTCCTGACTGCAGAGATATCAGACCTA  850

seq1  AGAAACCATGTTTTAAATTTACAAACAAATTATTCATACTATGATTATCA  895
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAA-CATGTTTTAAATTTACAAACAAATTATTCATACTATGATTATCA  899

seq1  TTCTGATGGGTATGTGTACCATACTGCATGTGTAGAAAATAAGTGGG-TA  944
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTCTGATGGGTATGTGTACCATACTGCATGTGTAGAAAATAAGTGGGTTA  949

seq1  GCTATGGTGGTTTGAATACGCTTGGCCCAGGGAGGGGCACTATT  988
      ||||| ||||||||||||||||||| ||  ||| ||||||||||
seq2  GCTAT-GTGGTTTGAATACGCTTGGACCCAGGA-GGGCACTATT  991