BAC Information

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BAC

Clone NameB6Ng01-149K06
Chromosome13 (Build37)4 (Build37)
Map Location 115,101,823 - 115,102,23414,896,301 - 14,896,712
singlet/doubletsingletsinglet
Overlap geneNdufs4
Upstream geneBC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik
Downstream geneLOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-149K06.bB6Ng01-149K06.g
ACCDH945925DH945926
length1,062412
definitionDH945925|Mus musculus domesticus DNA, BAC clone: B6Ng01-149K06, 5' end.DH945926|Mus musculus domesticus DNA, BAC clone: B6Ng01-149K06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(115,101,823 - 115,102,234)(14,896,301 - 14,896,712)
sequence
gaattctctgtttacatctgtaccccatttttaattgggttatttatttt
gttggtgtctaattttttgagttcattatatattttggatatcagccctc
tgtcatgtgcggagttgttgaaaatctttcccattctgtaggctgccgtt
ttttcctttgatgctgtcttttgccttacagaagttttgcagtttcacga
attcccatttatcgttgatcttcgtgccagggttgttggtgttctgttca
ggaagttgtttgctgtgccaacgctttcaagactattctctatgttctgt
tcctttagatttagtgtatctggtttcaagttgaggtctttgatccactt
ggacttgagttttgtgtagggtgacaggcatggatctatttgcattcttc
tacacgcaaccatccagttagaccagcaccatttgctttcttttttccta
ttgtataattttggttctttgtcaaagtgtctgtaggtgtgtggatttgc
tcctggttcttcatttctattccactgaacttgtctgcatttgttctgta
gtacagcttgaaatcgggaatggtgacactaccagaagttcttttattgt
acaggattgttttagctgttctggccttttgttttgttttgtttatttca
catgaagtcgagtactgttctttcaatgtttgtaaagaattctgttggaa
ttttgatgggacttgtgttgaatctgtagattgcttttggtaggatggcc
agtttttactatgttaatcttatggatccatgagtatgggagatcttttc
catcttctttatcttctttagtttctttcttcaaagatttgaagtttcct
gtcatatagtctttcacttgcttggttaggagttacaccaagaatatctt
atatttatttctggcctattgtgaagggtggttgttcacctaatttcttc
cttagcccatttaccagttgtatattggagggctactgcctttttttttt
tctttttttgaattatttttatccagcccttgctgaagtttggttttttt
tttttctttttt
gagagacacctttcaactaggaaattctatgattagacactgagtctcag
ttcctggaatagccttgcagcccaattgtttctgtgaaaaatgttttcct
ggatcattaacctctgtgatcatctgtaaaagccaactgaagagcatccc
cttcctggggaactgggctggaatatactattcatagcctgttgagtgtt
cctatattcttgtccacaatgtattgtcaaatgtagttctaacagcaaaa
cagctgaagagtttaataagtcattgtcaatgcaatgctgtttctcaaga
atctgttagacttcttaacaacttatatatagttaacttcatgtgtgcac
tagtatcattagtcttattattttgctaagtcatttaaagacaagaagtg
gtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_115101823_115102234
seq2: B6Ng01-149K06.b_1039_1108

seq1  TTTTTTTTTCTTTTTTTTAATTAATTTTTTATTAGATATTTTCTTTATAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACATTTCAAATGCTATCCTGAAAGTTCCCTATTACCCACCCCCTGCCCTG  100
                                                        
seq2  --------------------------------------------------  0

seq1  CTCCCCTACCCACCCACTTCCACTTCTTGGCCCTGGCATTCCCCTGTACT  150
                                                        
seq2  --------------------------------------------------  0

seq1  GGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAGTGATGGTC  200
                                                        
seq2  --------------------------------------------------  0

seq1  AACTAGGCCATCTTCTGCTACATATGCAGCTAGAGATACGAGCTCTGAGG  250
                                                        
seq2  --------------------------------------------------  0

seq1  GTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCCTTT  300
                                                        
seq2  --------------------------------------------------  0

seq1  CAGCAACTTGGGTGCTTTCTCTAGCTTCTCCATTACCTCCTGACTTTAAT  350
                     ||| | |   ||||   ||      ||| ||   |
seq2  ---------------TTTTTTT---TTCTTTTTT------TGAATTATTT  26

seq1  ATATCTGCAAAACCTTCTTGTAATGAGAATTCTTTTTCCTTTTTTTTTTT  400
       |||   | |  ||||  || | |               ||  |||||||
seq2  TTAT---CCAGCCCTTGCTGAAGT---------------TTGGTTTTTTT  58

seq1  TTTTTCTTTTTT  412
      ||||||||||||
seq2  TTTTTCTTTTTT  70

seq1: chr4_14896301_14896712
seq2: B6Ng01-149K06.g_79_490 (reverse)

seq1  ACACACACACACCACTTCTTGTCTTTAAATGACTTAGCAAAATAATAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACCACTTCTTGTCTTTAAATGACTTAGCAAAATAATAAGA  50

seq1  CTAATGATACTAGTGCACACATGAAGTTAACTATATATAAGTTGTTAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGATACTAGTGCACACATGAAGTTAACTATATATAAGTTGTTAAGA  100

seq1  AGTCTAACAGATTCTTGAGAAACAGCATTGCATTGACAATGACTTATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAACAGATTCTTGAGAAACAGCATTGCATTGACAATGACTTATTAA  150

seq1  ACTCTTCAGCTGTTTTGCTGTTAGAACTACATTTGACAATACATTGTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCAGCTGTTTTGCTGTTAGAACTACATTTGACAATACATTGTGGA  200

seq1  CAAGAATATAGGAACACTCAACAGGCTATGAATAGTATATTCCAGCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATATAGGAACACTCAACAGGCTATGAATAGTATATTCCAGCCCAG  250

seq1  TTCCCCAGGAAGGGGATGCTCTTCAGTTGGCTTTTACAGATGATCACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAGGAAGGGGATGCTCTTCAGTTGGCTTTTACAGATGATCACAGA  300

seq1  GGTTAATGATCCAGGAAAACATTTTTCACAGAAACAATTGGGCTGCAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAATGATCCAGGAAAACATTTTTCACAGAAACAATTGGGCTGCAAGG  350

seq1  CTATTCCAGGAACTGAGACTCAGTGTCTAATCATAGAATTTCCTAGTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCAGGAACTGAGACTCAGTGTCTAATCATAGAATTTCCTAGTTGA  400

seq1  AAGGTGTCTCTC  412
      ||||||||||||
seq2  AAGGTGTCTCTC  412