BAC Information

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BAC

Clone NameB6Ng01-150A16
Chromosome4 (Build37)
Map Location 4,549,928 - 4,551,147
singlet/doubletsinglet
Overlap genenone
Upstream geneLyn, LOC621858, Rps20, Mos, Plag1, Chchd7, LOC666586, Rdhe2, 4833413O15Rik, Penk1, A830012C17Rik, LOC100039297, LOC622019
Downstream geneImpad1, LOC100039338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150A16.bB6Ng01-150A16.g
ACCDH946222DH946223
length1,2191,184
definitionDH946222|Mus musculus domesticus DNA, BAC clone: B6Ng01-150A16, 5' end.DH946223|Mus musculus domesticus DNA, BAC clone: B6Ng01-150A16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtcttataaagtaggtcagtgttgagggcacaggagggcacta
caaatgaaaccatctggccagtggtaaagtagccatgttagcacggactg
tactgtactatataccaaagatggattgttaacctttttcatattgtgat
agttataaatgatgaaatatttacccattttttaggggtttaacaatttg
ataatttggtcaatgataaaagtgactttactggcatattcaaaacactt
aaatcacatggctaccaccggaatcaagataagaaaaaagtccctcatct
ctcaaattcttttatgctcactgtttgtgggtaagccttatttcagtccc
aacctgcttgcttgtaaacactatgtcattttctaatattcactttgggc
ctttcctagaaaggcacataaaagaaatcatacatcatataggttgcaat
ctggctgttttcctttaccaaaattcagctgtgatttttaaaacttctgt
gtaatagccaattcctaaacagcatctggattataacttagaaactgaat
atctagtaaatctccatgcattaaatattcttggacactaggataataaa
cttttaagaggtagtagggagggtctatttggaggaccttatgttattgg
ggacattccactaaaggagactgtgggatcctacctttcttccaaaccct
tttactcatcatttctcatgaggacataaaagcaatgggcacttattcat
ggaatggaacttctaaaccctgagtcacagtaaattcccctcatacattt
gttatactaacagttacattaacagtaactaatatattctaagaattaag
cttcccttctctggactttatagaactaaactacaaaatggtgttgaaaa
aactaaccttagatgattggaccctttcctccattggtttccttcaggat
ggagcagagctgcaactaggaagcgaccacagacataacaagcatccttg
agttcaaatatactaattctctttgacttttagctacacataaaaacaag
cttcttctaaaacaaaaccaagtacaggactgttatattaaattttaata
tcaaataaacataattgttaagaagccaaaaagccaatctctggtctctc
gcatatgaatacatctaagccacttgggtgtggccttacttaggaacaag
acgcaattttgagacagtc
gaattctgcactaaaccgtctgaccctgtgggttttttgtttgtttgttt
gtttgtttttggaagacttttaatgactgactctatttccttaaggatta
tgggtctctttagattgtttatctaatcttgatacagctttggtatgtga
tgtctatcaaagaaatcatacacttagtttagattttgaaatcttgtgga
gtacaggttttggaagtatgacccaatgattctctgggtttcctccatct
ctgttcttgtgtcacccttttcacttatgattgtgttaatttggatatcc
tgtctttgccttttaagtagtttgtttaagggtttgtaacttgttgattt
tgtcaaagaaccaacattttcccattgattctttgtatttttctccttat
ttctaaattattgatttcggccctgagtttgaccatttccaaccatctac
tctttttgggtgcatttgcttctttttgttctagcaatttcaggtgtgct
ttgaggtattagtataagatctccccagtttctttatgaaagcactcaat
gctatatacttttctcttagtattgttttcattgtgtcccataaagtttg
tgtatattgtgtcttcagtttcattgaattttagaaagtctttaatttct
tttcttatttcttccttgactcagtggccactgagtagagattttttttt
ttcaatttccatgagttttgggctttctgattttctgttgttgttgaaac
ccagatttagtccatgttggtctgataaacccaagggtggtatttcaatt
ttcttgtgtctattgaggtttgctttgtgatgggatcatcctgaactccc
aagaagagtatattcttttgtatttgggtaaatattatgtagatattctt
tagatctaattgtgtaatacctatgttagtttcattattcctctgcttag
tttctgtctggatgacaggtaattggtgagtatagggtggttgaaggact
cccactattatgtatggctttggaaatggtgactaaggtttagcaatgtt
tctttggcacatgtgggtgactttgccaatggggcataagatatcgacct
ggagtacacttggtggaatttccttgagagagagtgagagggttctctaa
tctctggacgatattcgggcgtggcaggagctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_4549928_4551147
seq2: B6Ng01-150A16.b_48_1266 (reverse)

seq1  GACTG-CTC-AAATGCCGTCTTGGTTTCCTAAGTAAG--CACA-CCAAGT  45
      ||||| ||| ||||  |||||||  ||||||||||||  |||| ||||||
seq2  GACTGTCTCAAAATTGCGTCTTG--TTCCTAAGTAAGGCCACACCCAAGT  48

seq1  -GCTTAAAGATG-AATCATA-GC-AGAGA-CAGAGATTGGCTTTTTTTGC  90
       ||||  ||||| | ||||| || ||||| ||||||||||| ||||| ||
seq2  GGCTT--AGATGTATTCATATGCGAGAGACCAGAGATTGGC-TTTTTGGC  95

seq1  TCTTTAACAATTTATGTTTATTTGATATTAAAATTTAATATAACAGTCCC  140
      |  ||||||| |||||||||||||||||||||||||||||||||||| ||
seq2  TTCTTAACAA-TTATGTTTATTTGATATTAAAATTTAATATAACAGT-CC  143

seq1  TGTACTTGGTTTTTGTTTTAGAAGAAGCTTTGTTTTTATGTGTAGCTAAA  190
      ||||||||| |||||||||||||||||| |||||||||||||||||||||
seq2  TGTACTTGG-TTTTGTTTTAGAAGAAGC-TTGTTTTTATGTGTAGCTAAA  191

seq1  AGTCAAAGAGAATTAGTTATATTTGAACTCAAGGATGCTTGTTATGTCTG  240
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGTCAAAGAGAATTAG-TATATTTGAACTCAAGGATGCTTGTTATGTCTG  240

seq1  TGGTCGCTTCCTAGTTGCAGCTCTGCTCCATCCCTGAAGGAAACCAATGG  290
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGGTCGCTTCCTAGTTGCAGCTCTGCTCCAT-CCTGAAGGAAACCAATGG  289

seq1  AGGAAAGGGTCCAATCATCTAAGGTTAGTTTTTTCAACACCATTTTGTAG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGGTCCAATCATCTAAGGTTAGTTTTTTCAACACCATTTTGTAG  339

seq1  TTTAGTTCTATAAAGTCCAGAGAAGGGAAGCTTAATTCTTAGAATATATT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTCTATAAAGTCCAGAGAAGGGAAGCTTAATTCTTAGAATATATT  389

seq1  AGTTACTGTTAATGTAACTGTTAGTATAACAAATGTATGAGGGGAATTTA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTGTTAATGTAACTGTTAGTATAACAAATGTATGAGGGGAATTTA  439

seq1  CTGTGACTCAGGGTTTAGAAGTTCCATTCCATGAATAAGTGCCCATTGCT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACTCAGGGTTTAGAAGTTCCATTCCATGAATAAGTGCCCATTGCT  489

seq1  TTTATGTCCTCATGAGAAATGATGAGTAAAAGGGTTTGGAAGAAAGGTAG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTCCTCATGAGAAATGATGAGTAAAAGGGTTTGGAAGAAAGGTAG  539

seq1  GATCCCACAGTCTCCTTTAGTGGAATGTCCCCAATAACATAAGGTCCTCC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCACAGTCTCCTTTAGTGGAATGTCCCCAATAACATAAGGTCCTCC  589

seq1  AAATAGACCCTCCCTACTACCTCTTAAAAGTTTATTATCCTAGTGTCCAA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGACCCTCCCTACTACCTCTTAAAAGTTTATTATCCTAGTGTCCAA  639

seq1  GAATATTTAATGCATGGAGATTTACTAGATATTCAGTTTCTAAGTTATAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTAATGCATGGAGATTTACTAGATATTCAGTTTCTAAGTTATAA  689

seq1  TCCAGATGCTGTTTAGGAATTGGCTATTACACAGAAGTTTTAAAAATCAC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATGCTGTTTAGGAATTGGCTATTACACAGAAGTTTTAAAAATCAC  739

seq1  AGCTGAATTTTGGTAAAGGAAAACAGCCAGATTGCAACCTATATGATGTA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAATTTTGGTAAAGGAAAACAGCCAGATTGCAACCTATATGATGTA  789

seq1  TGATTTCTTTTATGTGCCTTTCTAGGAAAGGCCCAAAGTGAATATTAGAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCTTTTATGTGCCTTTCTAGGAAAGGCCCAAAGTGAATATTAGAA  839

seq1  AATGACATAGTGTTTACAAGCAAGCAGGTTGGGACTGAAATAAGGCTTAC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACATAGTGTTTACAAGCAAGCAGGTTGGGACTGAAATAAGGCTTAC  889

seq1  CCACAAACAGTGAGCATAAAAGAATTTGAGAGATGAGGGACTTTTTTCTT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAACAGTGAGCATAAAAGAATTTGAGAGATGAGGGACTTTTTTCTT  939

seq1  ATCTTGATTCCGGTGGTAGCCATGTGATTTAAGTGTTTTGAATATGCCAG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGATTCCGGTGGTAGCCATGTGATTTAAGTGTTTTGAATATGCCAG  989

seq1  TAAAGTCACTTTTATCATTGACCAAATTATCAAATTGTTAAACCCCTAAA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCACTTTTATCATTGACCAAATTATCAAATTGTTAAACCCCTAAA  1039

seq1  AAATGGGTAAATATTTCATCATTTATAACTATCACAATATGAAAAAGGTT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGTAAATATTTCATCATTTATAACTATCACAATATGAAAAAGGTT  1089

seq1  AACAATCCATCTTTGGTATATAGTACAGTACAGTCCGTGCTAACATGGCT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCCATCTTTGGTATATAGTACAGTACAGTCCGTGCTAACATGGCT  1139

seq1  ACTTTACCACTGGCCAGATGGTTTCATTTGTAGTGCCCTCCTGTGCCCTC  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACCACTGGCCAGATGGTTTCATTTGTAGTGCCCTCCTGTGCCCTC  1189

seq1  AACACTGACCTACTTTATAAGACAGAATTC  1220
      ||||||||||||||||||||||||||||||
seq2  AACACTGACCTACTTTATAAGACAGAATTC  1219