BAC Information

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BAC

Clone NameB6Ng01-150E22
Chromosome4 (Build37)
Map Location 38,413,546 - 38,587,750
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC277771, LOC100039448
Downstream geneLOC665520, LOC100039487, 1700009N14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150E22.bB6Ng01-150E22.g
ACCDH946419DH946420
length1,1221,155
definitionDH946419|Mus musculus domesticus DNA, BAC clone: B6Ng01-150E22, 5' end.DH946420|Mus musculus domesticus DNA, BAC clone: B6Ng01-150E22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,586,606 - 38,587,750)(38,413,546 - 38,414,703)
sequence
gaattctgttttcatgtcacaattttattcttgctataaattcaaagatt
tgtaaagaaaaaatgtatatatatttagttatgaactccttaaatttaca
cctttacataattgttgtccagtttcctgtgatgtaggaaatactttgaa
agccttaggctgggtcacagtgataggcttgcaatatggtgctatttata
aatttgatcacttttgtacagcatattgctaatatgacaattatacatag
aatgtattcagttcttgatctaaattttgtacatttttaatccatttggt
ctaaacatatatcaaaatatctctaatgacttgagtacttcttgacaaag
cacaaaaaaaaatagtcaagttgttctataaagtggccttcctcctaatc
aactggagttgttaaatgttataaatgtacagacatcataatttaatggc
cttgtgatagatctactgaagtcccaactttgaaagaagtcctcaccttg
ggttaactaagtctgaagcttccaatttatgagtatcacaatgtaagttt
tactcttaaacagtttattcaacactatataagtatcatctttagtaaaa
tttacttccaatatacaatgctagctatattgtttgcattttgaaatcag
aatatctgatgtgtttcaaaaaaatttaatacaatttttgtaagattcct
tagatgtcattatcatcaagttaccactaaaagttaataagtattaagtc
attaataagtttaattcagacaataaaaatttatttaaatattactaaac
aagtatattttaatgtcaaacactattaattaaaatcaaaatgaaaaatg
tcaaaaggtaagtagaaaaacaccctttcaaggataagtactttcttttt
ttcattttttttgaaagtttccatctggcaacttatttattttttaaaaa
gacaaacaaagctagtagttttctatagatgataattaagctttggtgct
ctgtcagctagtgatatagttcaattcccagtgccacaggatggaatggg
agatgactctgaaaatatctgctacatagtctcataacagtagcataata
catgtacaaaccattgatcact
gaattcactggccatggggaaaggaggggagggagagtgcagctactgtt
atgtggcatagctgagaataagactgagagatttgatttacagtagccca
aggagatcttatggcctgtagtgagcctaccagctcagtctccacttcag
ggttctcatggaattcctgagtatgtgaacatgtgcatatttattcttgt
gctttctcttgaactttattccttttactggtttggcctgtccaaattta
tgttataaattttattttatttcatcataatatatttaataatgtcatta
taatataatataatataatataaatatatatgattatatattttttattt
ttaaaatgaaagtgtatatgaatgaataaatgaatgaatgaatgaatgaa
tgaatgaatatctagcccctagggcaaagattaactgacctaaaattcat
acattgggtatgtcaaccacttcaaaatgagcctcatgttcatgagttgt
tgaccaacatataacccacatataatggactccatagttttctgcttaca
gttcagtttgattgtttgttttcttttggcttcgcattttattttgtttt
cttgggtttagtttctttctttctttttctttctttcttttttttttttc
aagagaacttaaaggaagagtatctgaaaggctttggcagagtggtaaaa
tataataaaaagatatataaattaaaaattgtttttaaaaataaaaaatt
gaaaagttaaaaaaaataaacagttctgtggagcttcttggaattatgtt
gcttgcagttgctgatacagctttactatttaattacagtttaaaataag
tgtactttattaaattcatatcttcttacatattaaacatgaatttgaat
atcagtatatatttaaagatgaattcataacacttaaacactaacaattt
catatgatcagaaattgtagatactttatgataagaaaccaaaagttgta
tttgtgagaaaaaaaaatcaagaaaaatccaagctcattacctaagcatc
aatatttttacactccatgcatcgaataagtcatgtgcccttgcaagcct
gatttcaatttaatttttctctcgaaacctatgaaaaaaggagattccac
tttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_38586606_38587750
seq2: B6Ng01-150E22.b_43_1164 (reverse)

seq1  AGTGATCATTGTTTTGTAACAATTGTATTATTGCTTACTTGTTATGAGAC  50
      |||||||| || ||||| |||  ||||||| ||| ||| |||||||||||
seq2  AGTGATCAATGGTTTGT-ACA--TGTATTA-TGC-TAC-TGTTATGAGAC  44

seq1  TATGTAAAGCAGATATTTTCAGGAGTCCATTCTCCCATTCCATCCTGTGG  100
      |||||  |||||||||||||| |||||   |||||||||||||||||| |
seq2  TATGT--AGCAGATATTTTCA-GAGTC--ATCTCCCATTCCATCCTGT-G  88

seq1  GCACTGGGAATTGAACTTATATCACTAGGCTTGACAGGAAGCACCAAAGC  150
      |||||||||||||||| |||||||||||   ||||||  |||||||||||
seq2  GCACTGGGAATTGAAC-TATATCACTAG--CTGACAG--AGCACCAAAGC  133

seq1  CTAATTAATCATCTTAATAGAAAACTACTAGCTTTTGTTTTGTCTTTTTT  200
       ||||| |||||||  |||||||||||||||||||   |||||| |||||
seq2  TTAATT-ATCATCT--ATAGAAAACTACTAGCTTT--GTTTGTC-TTTTT  177

seq1  AAAAAATAAATAAGTTGCCAGATGGAAACTTTCAAAAAAAATGAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAATAAGTTGCCAGATGGAAACTTTCAAAAAAAATGAAAAAAA  227

seq1  GAAAGTACTTATCCTTGAAAGGGTGTTTTTCTACTTACCTTTTGACATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTACTTATCCTTGAAAGGGTGTTTTTCTACTTACCTTTTGACATTT  277

seq1  TTCATTTTGATTTTAATTAATAGTGTTTGACATTAAAATATACTTGTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTGATTTTAATTAATAGTGTTTGACATTAAAATATACTTGTTTA  327

seq1  GTAATATTTAAATAAATTTTTATTGTCTGAATTAAACTTATTAATGACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATTTAAATAAATTTTTATTGTCTGAATTAAACTTATTAATGACTT  377

seq1  AATACTTATTAACTTTTAGTGGTAACTTGATGATAATGACATCTAAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTATTAACTTTTAGTGGTAACTTGATGATAATGACATCTAAGGAA  427

seq1  TCTTACAAAAATTGTATTAAATTTTTTTGAAACACATCAGATATTCTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAAAAATTGTATTAAATTTTTTTGAAACACATCAGATATTCTGAT  477

seq1  TTCAAAATGCAAACAATATAGCTAGCATTGTATATTGGAAGTAAATTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATGCAAACAATATAGCTAGCATTGTATATTGGAAGTAAATTTTA  527

seq1  CTAAAGATGATACTTATATAGTGTTGAATAAACTGTTTAAGAGTAAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGATGATACTTATATAGTGTTGAATAAACTGTTTAAGAGTAAAACT  577

seq1  TACATTGTGATACTCATAAATTGGAAGCTTCAGACTTAGTTAACCCAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGTGATACTCATAAATTGGAAGCTTCAGACTTAGTTAACCCAAGG  627

seq1  TGAGGACTTCTTTCAAAGTTGGGACTTCAGTAGATCTATCACAAGGCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACTTCTTTCAAAGTTGGGACTTCAGTAGATCTATCACAAGGCCAT  677

seq1  TAAATTATGATGTCTGTACATTTATAACATTTAACAACTCCAGTTGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATGATGTCTGTACATTTATAACATTTAACAACTCCAGTTGATTA  727

seq1  GGAGGAAGGCCACTTTATAGAACAACTTGACTATTTTTTTTTGTGCTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGGCCACTTTATAGAACAACTTGACTATTTTTTTTTGTGCTTTG  777

seq1  TCAAGAAGTACTCAAGTCATTAGAGATATTTTGATATATGTTTAGACCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAGTACTCAAGTCATTAGAGATATTTTGATATATGTTTAGACCAA  827

seq1  ATGGATTAAAAATGTACAAAATTTAGATCAAGAACTGAATACATTCTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTAAAAATGTACAAAATTTAGATCAAGAACTGAATACATTCTATG  877

seq1  TATAATTGTCATATTAGCAATATGCTGTACAAAAGTGATCAAATTTATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTGTCATATTAGCAATATGCTGTACAAAAGTGATCAAATTTATAA  927

seq1  ATAGCACCATATTGCAAGCCTATCACTGTGACCCAGCCTAAGGCTTTCAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCACCATATTGCAAGCCTATCACTGTGACCCAGCCTAAGGCTTTCAA  977

seq1  AGTATTTCCTACATCACAGGAAACTGGACAACAATTATGTAAAGGTGTAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTCCTACATCACAGGAAACTGGACAACAATTATGTAAAGGTGTAA  1027

seq1  ATTTAAGGAGTTCATAACTAAATATATATACATTTTTTCTTTACAAATCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGGAGTTCATAACTAAATATATATACATTTTTTCTTTACAAATCT  1077

seq1  TTGAATTTATAGCAAGAATAAAATTGTGACATGAAAACAGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTTATAGCAAGAATAAAATTGTGACATGAAAACAGAATTC  1122

seq1: chr4_38413546_38414703
seq2: B6Ng01-150E22.g_67_1221

seq1  GAATTCACTGGCCATGGGGAAAGGAGGGGAGGGAGAGTGCAGCTACTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGCCATGGGGAAAGGAGGGGAGGGAGAGTGCAGCTACTGTT  50

seq1  ATGTGGCATAGCTGAGAATAAGACTGAGAGATTTGATTTACAGTAGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCATAGCTGAGAATAAGACTGAGAGATTTGATTTACAGTAGCCCA  100

seq1  AGGAGATCTTATGGCCTGTAGTGAGCCTACCAGCTCAGTCTCCACTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATCTTATGGCCTGTAGTGAGCCTACCAGCTCAGTCTCCACTTCAG  150

seq1  GGTTCTCATGGAATTCCTGAGTATGTGAACATGTGCATATTTATTCTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCATGGAATTCCTGAGTATGTGAACATGTGCATATTTATTCTTGT  200

seq1  GCTTTCTCTTGAACTTTATTCCTTTTACTGGTTTGGCCTGTCCAAATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTCTTGAACTTTATTCCTTTTACTGGTTTGGCCTGTCCAAATTTA  250

seq1  TGTTATAAATTTTATTTTATTTCATCATAATATATTTAATAATGTCATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAAATTTTATTTTATTTCATCATAATATATTTAATAATGTCATTA  300

seq1  TAATATAATATAATATAATATAAATATATATGATTATATATTTTTTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAATATAATATAATATAAATATATATGATTATATATTTTTTATTT  350

seq1  TTAAAATGAAAGTGTATATGAATGAATAAATGAATGAATGAATGAATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGAAAGTGTATATGAATGAATAAATGAATGAATGAATGAATGAA  400

seq1  TGAATGAATATCTAGCCCCTAGGGCAAAGATTAACTGACCTAAAATTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAATATCTAGCCCCTAGGGCAAAGATTAACTGACCTAAAATTCAT  450

seq1  ACATTGGGTATGTCAACCACTTCAAAATGAGCCTCATGTTCATGAGTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGGTATGTCAACCACTTCAAAATGAGCCTCATGTTCATGAGTTGT  500

seq1  TGACCAACATATAACCCACATATAATGGACTCCATAGTTTTCTGCTTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAACATATAACCCACATATAATGGACTCCATAGTTTTCTGCTTACA  550

seq1  GTTCAGTTTGATTGTTTGTTTTCTTTTGGCTTCGCATTTTATTTTGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTTTGATTGTTTGTTTTCTTTTGGCTTCGCATTTTATTTTGTTTT  600

seq1  CTTGGGTTTAGTTTCTTTCTTTCTTTTTCTTTCTTTC--TTTTTTTTTTC  648
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  CTTGGGTTTAGTTTCTTTCTTTCTTTTTCTTTCTTTCTTTTTTTTTTTTC  650

seq1  AAGAGAACTTAAAGGAAGAGTATCTGAAAGGCTTTGGCAGAGTGGTAAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAACTTAAAGGAAGAGTATCTGAAAGGCTTTGGCAGAGTGGTAAAA  700

seq1  TATAATAAAAAGATATATAAATTAAAAATTG-TTTTAAAAATAAAAAATT  747
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TATAATAAAAAGATATATAAATTAAAAATTGTTTTTAAAAATAAAAAATT  750

seq1  GAAAAGTTAAAAAAAATAAACAGTTCTGTGGAGCTTCTTGGAATTATGTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTTAAAAAAAATAAACAGTTCTGTGGAGCTTCTTGGAATTATGTT  800

seq1  GCTTGCAGTTGCTGATACAGC-TTACTATTTAATTACAGTTTAAAATAAG  846
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCTTGCAGTTGCTGATACAGCTTTACTATTTAATTACAGTTTAAAATAAG  850

seq1  TGTACTTTATTAAATTCATATCTTCTTACATATTAAACATGAATTTGAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTTATTAAATTCATATCTTCTTACATATTAAACATGAATTTGAAT  900

seq1  ATCAGTATATATTTAAAGATGAATTCATAACATCTTAAACACTAACAATT  946
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATCAGTATATATTTAAAGATGAATTCATAACA-CTTAAACACTAACAATT  949

seq1  TCATATGATCAGAAATTTGTAGATAC-TTATGATAGGAAACCAAAAGTTG  995
      ||||||||||||||| |||||||||| |||||||| ||||||||||||||
seq2  TCATATGATCAGAAA-TTGTAGATACTTTATGATAAGAAACCAAAAGTTG  998

seq1  TATTTGTGAAGAAAAAAAAATCAAGAAAAAATCCAAGCTCATTAACTAAG  1045
      |||||||| |||||||||||||||| |||||||||||||||||| |||| 
seq2  TATTTGTG-AGAAAAAAAAATCAAG-AAAAATCCAAGCTCATTACCTAA-  1045

seq1  GCATCAATATTTTTACAACTTCCATGCATCGAGTAAGTCATGTGCACTTG  1095
      |||||||||||||||||   |||||||||||| |||||||||||| ||| 
seq2  GCATCAATATTTTTACA--CTCCATGCATCGAATAAGTCATGTGCCCTT-  1092

seq1  GCAAGCATGATTTCAAATTTATTTTTTTTCTTTGAAACTATG-AAAAATG  1144
      |||||| ||||||| |||||| ||||| |||   || ||||| ||||| |
seq2  GCAAGCCTGATTTC-AATTTAATTTTTCTCTCGAAACCTATGAAAAAAGG  1141

seq1  AGATTCAACTTTAT  1158
      |||||| |||||||
seq2  AGATTCCACTTTAT  1155