BAC Information

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BAC

Clone NameB6Ng01-150H01
Chromosome4 (Build37)
Map Location 67,474,337 - 67,589,793
singlet/doubletdoublet
Overlap genenone
Upstream geneTlr4, LOC100039379, Hmgb1-rs18
Downstream geneLOC433715, Tcp1-ps1, Dbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150H01.bB6Ng01-150H01.g
ACCDH946519DH946520
length8431,076
definitionDH946519|Mus musculus domesticus DNA, BAC clone: B6Ng01-150H01, 5' end.DH946520|Mus musculus domesticus DNA, BAC clone: B6Ng01-150H01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,474,337 - 67,475,171)(67,588,705 - 67,589,793)
sequence
gaattcatgtcctaaggagccgtgctttacttcactggcttgttcaactg
tcttaaggtctgttaagactctttcttgttctctctctctctctctctct
ctctctctctctctctctcaatgtgtgtgtgtgtatgtgtgtgtgtgttt
gtgtgtgtatgtgtgcgcgcacgcgtgtctcccttgtaaatttactccaa
attgctcatcagaaatttcagttttctagatgacaccacagaaggaaggt
gtcagtattagctctctaaacctttcttttaatatcattctcagcaaaag
attcttggctactggacactttagtctctgtgtcatttacattttgttac
tgtcaagaaaataacacaaccaaaagcaacttatgatagatgtagtattt
ttggctcattcataatgacaggggatgttttgaaagaagctgagagtcac
attttcaaccacaaagagaaagcaaacattgtgaactagaagtggtgtgg
ggctataaactttcaaagcctatgtccagtgatcgatatacttcccaaag
accaatacttgagactacgaacggcattttttacacactacctatttagc
catgtggtaattattcaattaattcattaattcctcctcttcacctttta
cttctgatgtctagattctagatgtactatttttctagcaacagtctata
attttggcaaaatagcaaaacaaacaaacaaaagcagcccaatttgtgtg
gtccaaatagatttcttttattttaattttactttaatcttttttttttt
aactccaaatttttcccctttcctttactctcctctaacggtt
gaattcagcttccatctgtttagcaattcaaagcttcaagatttgcattc
atttcactttgatagaagtttggggaggggaggttctggaaatgattttc
tgtatagctctggctgtctcagaacttcctttgcggatcagactggcctt
gaatacacagagacttgcctggttctgccctctcagtgctggaattgggg
agtctcacaatcctctatgaattttaggcaactaatagcttctaagacag
agataattaatcctttccagggaagcatctcttggtaggttatttaatac
caaataatcagccctacacatatacaaggaaggaacaatagtcctctctc
tctctcttctctgtgtgtgggtattagagagtaaggaggaatttaaaaat
aacataaatacaacactcatgtatgcaattttcaagactaatactgtgaa
taaaagcaaataaaattaaaagcaaacacaaattttcctgatacaatatc
tcccaaatccacagctttccacattgtcattatcacatataggaaatgga
atctctaattgtatatattgcttaaagatatccatgtaatcaccctagac
aactaccgaaatatcacatgaaaacatttttttcaacaagaaaagcaagg
caaaaatttacaaatatatccaagaaaagcaacatggatattagtcttat
tcatttaaacattcagtcttctcccttttgaaggcacagagaacccttct
taaacatacaccaacatgggcagaagcatctcgttagtttggaagggtaa
gctctgaacagacgccagggcactgaaattctatgcaggtgctttatatt
gtttccttcgcctcccaacagtgacaatggaagcttcccgtttcaatgat
aaaactttgagttttcaccaacaaaacgacagatcgtatattataagggg
ttaccttggagatcaatgggccttttattgcttttggcagatggttggta
catagagtttatcatttcacaaaatagcttttcctgtctgatagacatta
ctatttttgttttatttttcttctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_67474337_67475171
seq2: B6Ng01-150H01.b_44_886

seq1  GAATTCATGTCCTAAGGAGCCGTGCTTTACTTCACTGGCTTGTTCAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTCCTAAGGAGCCGTGCTTTACTTCACTGGCTTGTTCAACTG  50

seq1  TCTTAAGGTCTGTTAAGACTCTTTCTTGTTCTCTCTCTCTCTCTCTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGGTCTGTTAAGACTCTTTCTTGTTCTCTCTCTCTCTCTCTCTCT  100

seq1  CTCTCTCTCTCTCTCTCTCAATGTGTGTGTGTGTATGTGTGTGTGTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCAATGTGTGTGTGTGTATGTGTGTGTGTGTTT  150

seq1  GTGTGTGTATGTGTGCGCGCACGCGTGTCTCCCTTGTAAATTTACTCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTATGTGTGCGCGCACGCGTGTCTCCCTTGTAAATTTACTCCAA  200

seq1  ATTGCTCATCAGAAATTTCAGTTTTCTAGATGACACCACAGAAGGAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCATCAGAAATTTCAGTTTTCTAGATGACACCACAGAAGGAAGGT  250

seq1  GTCAGTATTAGCTCTCTAAACCTTTCTTTTAATATCATTCTCAGCAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTATTAGCTCTCTAAACCTTTCTTTTAATATCATTCTCAGCAAAAG  300

seq1  ATTCTTGGCTACTGGACACTTTAGTCTCTGTGTCATTTACATTTTGTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGGCTACTGGACACTTTAGTCTCTGTGTCATTTACATTTTGTTAC  350

seq1  TGTCAAGAAAATAACACAACCAAAAGCAACTTATGATAGATGTAGTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGAAAATAACACAACCAAAAGCAACTTATGATAGATGTAGTATTT  400

seq1  TTGGCTCATTCATAATGACAGGGGATGTTTTGAAAGAAGCTGAGAGTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCATTCATAATGACAGGGGATGTTTTGAAAGAAGCTGAGAGTCAC  450

seq1  ATTTTCAACCACAAAGAGAAAGCAAACATTGTGAACTAGAAGTGGTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAACCACAAAGAGAAAGCAAACATTGTGAACTAGAAGTGGTGTGG  500

seq1  GGCTATAAACTTTCAAAGCCTATGTCCAGTGATCGATATACTTCCCAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATAAACTTTCAAAGCCTATGTCCAGTGATCGATATACTTCCCAAAG  550

seq1  ACCAATACTTGAGACTACGAACGGCATTTTTTACACACTACCTATTTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATACTTGAGACTACGAACGGCATTTTTTACACACTACCTATTTAGC  600

seq1  CATGTGGTAATTATTCAATTAATTCATTAATTCCTCCTCTTCACC-TTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CATGTGGTAATTATTCAATTAATTCATTAATTCCTCCTCTTCACCTTTTA  650

seq1  CTTCTGATGTCTAGATTCTAGATGTACTA-TTTTCTAGCAACAGTCTATA  698
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTTCTGATGTCTAGATTCTAGATGTACTATTTTTCTAGCAACAGTCTATA  700

seq1  A-TTTGGCAAAATAGC-AAACAAACAAAC-AAAGCAGCCCAA-TTGTGTG  744
      | |||||||||||||| |||||||||||| |||||||||||| |||||||
seq2  ATTTTGGCAAAATAGCAAAACAAACAAACAAAAGCAGCCCAATTTGTGTG  750

seq1  GTCCAAATAGAATTTCTTTTATTTTAATTTTAC-TTAATC-TTTTTTTTT  792
      |||||||||| |||||||||||||||||||||| |||||| |||||||||
seq2  GTCCAAATAG-ATTTCTTTTATTTTAATTTTACTTTAATCTTTTTTTTTT  799

seq1  ACACTCCAGATTTTTCCCCTTCCCTTTACTCT-CTCTAACTGTT  835
        |||||| |||||||||||| |||||||||| ||||||| |||
seq2  TAACTCCAAATTTTTCCCCTTTCCTTTACTCTCCTCTAACGGTT  843

seq1: chr4_67588705_67589793
seq2: B6Ng01-150H01.g_65_1140 (reverse)

seq1  ATAGAAAGGAAAAAATAAAAACAAAAAATAGTTAATGTCTATCCAGACAG  50
      ||||||    ||||||||||   |||||||| |||||||||| |||||||
seq2  ATAGAA---GAAAAATAAAA--CAAAAATAG-TAATGTCTAT-CAGACAG  43

seq1  GAAAAGCTTATTTTGTGGAAATGATTAAACTCTAATGTACCAACCATTCT  100
      ||||||| |||||||| ||||||| |||||||| |||||||||||| |||
seq2  GAAAAGC-TATTTTGT-GAAATGA-TAAACTCT-ATGTACCAACCA-TCT  88

seq1  GCCAAAAGCAATAAAAGGCCCATTGATCTCCAAGGTAACCCCCTTATAAT  150
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCCAAAAGCAATAAAAGGCCCATTGATCTCCAAGGTAA-CCCCTTATAAT  137

seq1  ATACGATCTGTCGTTTTTGTTGGTGAAAACTCAAAGTTTTATCATTGAAA  200
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATACGATCTGTCG-TTTTGTTGGTGAAAACTCAAAGTTTTATCATTGAAA  186

seq1  CGGGAAGCTTCCATTGTCACTGTTGGGAGGCGAAGGAAACAATATAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAGCTTCCATTGTCACTGTTGGGAGGCGAAGGAAACAATATAAAGC  236

seq1  ACCTGCATAGAATTTCAGTGCCCTGGCGTCTGTTCAGAGCTTACCCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCATAGAATTTCAGTGCCCTGGCGTCTGTTCAGAGCTTACCCTTCC  286

seq1  AAACTAACGAGATGCTTCTGCCCATGTTGGTGTATG-TTAAGAAGGGTTC  349
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAACTAACGAGATGCTTCTGCCCATGTTGGTGTATGTTTAAGAAGGGTTC  336

seq1  TCTGTGCCTTCAAAAGGGAGAAGACTGAATGTTTAAATGAATAAGACTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCCTTCAAAAGGGAGAAGACTGAATGTTTAAATGAATAAGACTAA  386

seq1  TATCCATGTTGCTTTTCTTGGATATATTTGTAAATTTTTGCCTTGCTTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATGTTGCTTTTCTTGGATATATTTGTAAATTTTTGCCTTGCTTTT  436

seq1  CTTGTTGAAAAAAATGTTTTCATGTGATATTTCGGTAGTTGTCTAGGGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGAAAAAAATGTTTTCATGTGATATTTCGGTAGTTGTCTAGGGTG  486

seq1  ATTACATGGATATCTTTAAGCAATATATACAATTAGAGATTCCATTTCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGGATATCTTTAAGCAATATATACAATTAGAGATTCCATTTCCT  536

seq1  ATATGTGATAATGACAATGTGGAAAGCTGTGGATTTGGGAGATATTGTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGATAATGACAATGTGGAAAGCTGTGGATTTGGGAGATATTGTAT  586

seq1  CAGGAAAATTTGTGTTTGCTTTTAATTTTATTTGCTTTTATTCACAGTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAATTTGTGTTTGCTTTTAATTTTATTTGCTTTTATTCACAGTAT  636

seq1  TAGTCTTGAAAATTGCATACATGAGTGTTGTATTTATGTTATTTTTAAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTGAAAATTGCATACATGAGTGTTGTATTTATGTTATTTTTAAAT  686

seq1  TCCTCCTTACTCTCTAATACCCACACACAGAGAAGAGAGAGAGAGAGGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTACTCTCTAATACCCACACACAGAGAAGAGAGAGAGAGAGGAC  736

seq1  TATTGTTCCTTCCTTGTATATGTGTAGGGCTGATTATTTGGTATTAAATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTCCTTCCTTGTATATGTGTAGGGCTGATTATTTGGTATTAAATA  786

seq1  ACCTACCAAGAGATGCTTCCCTGGAAAGGATTAATTATCTCTGTCTTAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCAAGAGATGCTTCCCTGGAAAGGATTAATTATCTCTGTCTTAGA  836

seq1  AGCTATTAGTTGCCTAAAATTCATAGAGGATTGTGAGACTCCCCAATTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTAGTTGCCTAAAATTCATAGAGGATTGTGAGACTCCCCAATTCC  886

seq1  AGCACTGAGAGGGCAGAACCAGGCAAGTCTCTGTGTATTCAAGGCCAGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGAGAGGGCAGAACCAGGCAAGTCTCTGTGTATTCAAGGCCAGTC  936

seq1  TGATCCGCAAAGGAAGTTCTGAGACAGCCAGAGCTATACAGAAAATCATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCGCAAAGGAAGTTCTGAGACAGCCAGAGCTATACAGAAAATCATT  986

seq1  TCCAGAACCTCCCCTCCCCAAACTTCTATCAAAGTGAAATGAATGCAAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAACCTCCCCTCCCCAAACTTCTATCAAAGTGAAATGAATGCAAAT  1036

seq1  CTTGAAGCTTTGAATTGCTAAACAGATGGAAGCTGAATTC  1089
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGCTTTGAATTGCTAAACAGATGGAAGCTGAATTC  1076