BAC Information

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BAC

Clone NameB6Ng01-150J04
Chromosome4 (Build37)Y (Build37)
Map Location 60,098,317 - 60,099,256385,601 - 385,760
singlet/doubletsingletsinglet
Overlap geneLOC620846
Upstream geneAI481877, LOC433712, Ugcg, LOC100041535, LOC634731, LOC666719, Rod1, Hsdl2, E130308A19Rik, LOC100041592, 1110054O05Rik, Snx30, Slc46a2, LOC100041656, Mup4, LOC620807, LOC100041658
Downstream geneMup2, LOC620882, LOC100041687, LOC667221, LOC100038948, LOC620997, Mup1, LOC620942, LOC100039008, LOC100039028, LOC620982, LOC100039054, LOC100039063, LOC667234, LOC100039089, LOC667239, LOC100039116, LOC667242, LOC100039150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150J04.bB6Ng01-150J04.g
ACCDH946619DH946620
length941225
definitionDH946619|Mus musculus domesticus DNA, BAC clone: B6Ng01-150J04, 5' end.DH946620|Mus musculus domesticus DNA, BAC clone: B6Ng01-150J04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,098,317 - 60,099,256)(385,601 - 385,760)
sequence
gaattctccagacatgaatgtgctccacaaaaagtctcatgctgccatgt
tcttctatgttttctcttttgtcagaaggcaagataatagtgtaccattc
cccattaatctgtagtagataagcaaatcgttaagagagaagaagcaggg
ataccacatgtacatgtttccacttgaactccaccctatgcattacggcc
tgagcatacacaggggtatatctcatgccacttgccgcaatacttagcat
agtgtccctacctctcagtgagaacagaggtccccaaacattgttagatc
tgagtagctggtcttacttcaaggtctggagccattcatttgtctaatac
attgtggcactataaccattccctcaaaggacccacttggctaaaacatt
tccccaaagcacattctgatcatacatacaattcactgatcgtacttttt
ctatattaaagttccttcacatacacctagcttcttctgcatggacacag
actagggttagtcccaaacacaacaacagcagcagcagctgcatttggtc
tgaaatagaattatctgtgtgtcaggaccacgtctttctggtgatgtggt
gggttttttttttcttcctgtatgggtcgactctacctctgtcaggcttt
gtggaatattttctcatttattgatgagaggccaaggattgttcctgcca
ttttcaaacttggcaatatcatcacctatggattgatctagcattcttac
atttctcaaaacattttcccaagaaaacagtgggtgttcaagggaactgt
gatctggaactagaagcacctttgaatctgggccttgaatcaaaaagaca
tgttttggaggggatgggaaatgaactgggaaggacagtgtgactagaat
atctgctctaaggggagtatggaatagctggactgactcaa
gaattctttgtttagctctgtactttttttttttttttttttggagacag
gctgtcttggaactcactttgtaaaccaggctggcctcaaactcaaactc
tcaaatctgcctggctctgcctcccgagtgctgggattaaaggcgtgggc
caccaccacccatcctctgtaccctatttttaatagggttatttggttct
ttggcatcccacttcttgagttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_60098317_60099256
seq2: B6Ng01-150J04.b_41_981 (reverse)

seq1  TTGAGTCATTCAACTTCTTCCATACTCACCTTAAAGCAAATATTCTATAC  50
      |||||||| || |  | |||||||||| ||||| |||| ||||||||  |
seq2  TTGAGTCAGTCCAGCTATTCCATACTCCCCTTAGAGCAGATATTCTAGTC  50

seq1  ATACTTGTCCTT-CCAGTTCATTTCCCATCCCCTCCAAAAC-TGTCTTTC  98
      | || ||||||| |||||||||||||||||||||||||||| ||||||| 
seq2  ACAC-TGTCCTTCCCAGTTCATTTCCCATCCCCTCCAAAACATGTCTTTT  99

seq1  TGATTCAAGG-CCAGATTCAAAGGTGCCTCTAGTTCCAGATCACAGTTCC  147
      |||||||||| |||||||||||||||| ||||||||||||||||||||||
seq2  TGATTCAAGGCCCAGATTCAAAGGTGCTTCTAGTTCCAGATCACAGTTCC  149

seq1  CTTGAACACCCACTGTTTTCTTGGGAATATGTTTTGAGAAATGTAAGACT  197
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  CTTGAACACCCACTGTTTTCTTGGGAAAATGTTTTGAGAAATGTAAGAAT  199

seq1  ACTAAATCAATCCATAGGTGATGATATTGCCAAGTTTGAAAATGGCAGGA  247
       ||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGATCAATCCATAGGTGATGATATTGCCAAGTTTGAAAATGGCAGGA  249

seq1  ACAATCCTTGGCCTCTCATCAATAAATGAGAAAATATTCCACAAAGCCTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCCTTGGCCTCTCATCAATAAATGAGAAAATATTCCACAAAGCCTG  299

seq1  ACAGAGGTAGAGTCGACCCATACAGGAAGAAAAAAAAAACCCACCACATC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGTAGAGTCGACCCATACAGGAAGAAAAAAAAAACCCACCACATC  349

seq1  ACCAGAAAGACGTGGTCCTGACACACAGATAATTCTATTTCAGACCAAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAAGACGTGGTCCTGACACACAGATAATTCTATTTCAGACCAAAT  399

seq1  GCAGCTGCTGCTGCTGCTGCTGTGTTTGGGACTAACCCTAGTCTGTGTCC  447
      |||||||||||||||| || ||||||||||||||||||||||||||||||
seq2  GCAGCTGCTGCTGCTGTTGTTGTGTTTGGGACTAACCCTAGTCTGTGTCC  449

seq1  ATGCAGAAGAAGCTAGGTCTATGTGAAGGAACTTTAATATAGAAAAAGTA  497
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATGCAGAAGAAGCTAGGTGTATGTGAAGGAACTTTAATATAGAAAAAGTA  499

seq1  CGATCAGTGAATTGTATGTATGATCAGAATGTGCTTTGGGGAAATGTTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCAGTGAATTGTATGTATGATCAGAATGTGCTTTGGGGAAATGTTTT  549

seq1  AGCCAAGTGGGTCCTTTGAGGGAATGGTTATAGTGCCACAATGTATTAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGTGGGTCCTTTGAGGGAATGGTTATAGTGCCACAATGTATTAGA  599

seq1  CAAATGAATGGCTCCAGACCTTGAAGTAAGACCAGCTACTCAGATCTAAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAATGGCTCCAGACCTTGAAGTAAGACCAGCTACTCAGATCTAAC  649

seq1  AATGTTTGGGGACCTCTGTTCTCACTGAGAGGTAGGGACACTATGCTAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTGGGGACCTCTGTTCTCACTGAGAGGTAGGGACACTATGCTAAG  699

seq1  TATTGTGGCAACTGGCATGAGATATACCCCTGTGTATGCTCAGGCCCTAA  747
      ||||| ||||| |||||||||||||||||||||||||||||||||| |||
seq2  TATTGCGGCAAGTGGCATGAGATATACCCCTGTGTATGCTCAGGCCGTAA  749

seq1  TGCATAGGCTGGAGTTCAAGTGGAAACATGTACATGTGGTATCCCTGCTT  797
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGGGTGGAGTTCAAGTGGAAACATGTACATGTGGTATCCCTGCTT  799

seq1  CTTCTCTCTTAACGATTTGCTTATCTACTACAGATTAATGGGGAATGGTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCTTAACGATTTGCTTATCTACTACAGATTAATGGGGAATGGTA  849

seq1  CACTATTATCCTGCCTTCTGACAAAAGAGAAAACATAGAAGAACATGGCA  897
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CACTATTATCTTGCCTTCTGACAAAAGAGAAAACATAGAAGAACATGGCA  899

seq1  GCATGAGACTTTTTGTGGAGCACATTCATGTCTTGGAGAATTC  940
      |||||||||||||||||||||||||||||||| ||||||||||
seq2  GCATGAGACTTTTTGTGGAGCACATTCATGTC-TGGAGAATTC  941

seq1: chrY_385601_385760
seq2: B6Ng01-150J04.g_91_228

seq1  TTTTTTTTTTTTTTTTTTTGGTTTTTTGAGACAGGTTTTCTCTATATATA  50
      ||||||||||||||||||||       ||||||                 
seq2  TTTTTTTTTTTTTTTTTTTG-------GAGACA-----------------  26

seq1  GCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTC  100
           ||||||| ||||||||||| |||| |||||||||||||| |||||
seq2  -----GGCTGTCTTGGAACTCACTTTGTAAACCAGGCTGGCCTCAAACTC  71

seq1  A------GAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGC  144
      |       ||||||||||| ||||||||||||||||||||||||||||||
seq2  AAACTCTCAAATCTGCCTGGCTCTGCCTCCCGAGTGCTGGGATTAAAGGC  121

seq1  TTGCGCCACCA-CACCC  160
       || ||||||| |||||
seq2  GTGGGCCACCACCACCC  138