BAC Information

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BAC

Clone NameB6Ng01-150P03
Chromosome4 (Build37)
Map Location 44,841,243 - 44,919,978
singlet/doubletdoublet
Overlap geneZcchc7
Upstream geneLOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk, Pax5, 5730488B01Rik, LOC545618
Downstream geneD4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-150P03.bB6Ng01-150P03.g
ACCDH946892DH946893
length1,1241,186
definitionDH946892|Mus musculus domesticus DNA, BAC clone: B6Ng01-150P03, 5' end.DH946893|Mus musculus domesticus DNA, BAC clone: B6Ng01-150P03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,841,243 - 44,842,385)(44,918,772 - 44,919,978)
sequence
gaattctttgtttagctctgagccccataaatttcattttctaacaatgt
aattgtttagttgtatttagtgctaagaaggagtaatgaggacaaggtac
attgtctgcacttgatctttttctggaaattgcatttgatagatatttta
ttacacactgtgtgataactttatgtcacaaaagactctgcctcctcaca
attttgattactcctcagcttgggtaggtcccaccccaccccaaccccca
ctcccacccccacccccgggtgtgactcctgccttaaaggagacaaacaa
ctatttcaggcaagacaaattttacaaaaaaccctgcaggtctcttgaat
gtagaaagaaatgcttataaattatgtaggtaaatagattattttaagaa
atattttaaatttcaaaaccggtaaaaggtaaaacagaccaaaacaatga
attgctttattgataaaaagatcctaaagctatctttagataagtttctc
agttttgaaatgtgcttatttatctgataattatgcatctttggatacca
agtaaatgttagattcattaatctgcaaagtaggttgtaaaatactccag
attctagttctagatgtgctgttgttgactagttgtacaaatatgtcaga
gttttacctcctgggatctctttttcttattgtatacttgaattgttttt
aaatttttcagttctccagtgttctggtctattaacttgcacattctttt
aaaggaatgtgtgatataatcatatattcatttaataaaggctgtcttca
aatttacatttccccaagttattgcagaataaatagatcaacaacattga
aaagccagaaagggaactgaaggtgagaagcatttttacttaaaagtttt
tgggtcttaaccaacatttggtatgatacttgctctgtgtgtgtgtctgt
gtgcgtgagtgtgtgagtgtgtgtgtgtatgtgaaattcatcaccatcac
cagagatatttctatccagaatattataaacatcaatatctgttttctcc
caaaagacattaggactctaatttactatctagtggcaaagcgcttaact
tattatccgagagtttaacataaa
gaattccttagtttttgaacaatcatctgattgccctgtacaggaagatg
atgactgatatgggagtggatgatatgaaacttcttctcttttattagat
aacagtactacaattaaaaaagacttcaaagcagaggtcattggagagca
tacatgttaattctaaatacaaaatgtaaccgcaatcattaatcaaaatt
taaaatcctatttttcctacatgctaaactttggtgacttctttttaaca
ctcctgagtattgtacacagagatattttaaaaattctcagcaagcagaa
tggctaagcatggaaaatttagatagaataaacttctaaagaaagaagct
aactactgcaagtgaaaacttggtctgattaaaacatttagactgaatgg
gtagtcagctgaagtgaaaacacacacagcatcatcatgcagtcctggcc
cacggctcccaccttcctggcatttaggtagatgaacaccagaacacaca
cagcgcactcgtacatctgtttcggcaatgtggttcactgcttgccaact
tttgcccaactagttttcctgtctattgtactttggataataaacataca
tgaataactgagtgttattattcataacattcaaagatgaatcaacatac
tttgccatgccagatgaattgagagtttatattgtgcattttgaaccata
ttgaattttatcaggtgctaattattgttttatgagaacaacggcttagt
gcatctgttgtttaattcccacttccctattctcaaatgcgtacatcaaa
gaaaataaaacactcaatcttaaacagcccctgacagcagaccaagactc
aagtgctcaacagacaaggcccttgccaccagtttctcatttttccacaa
caatgaacaaacacaaacaaggctaagcggcctttctccttctcagctcc
ctcggccagttgtctgccttgtactgagggagcctgaacgcagcctgctg
ggagcacagcacagagaaagatagcttactacatgcgagcatttgcaaaa
gggaggaaaaaaccccagtactgtatttgtatatgattacaatgtatgag
cctgacaagagaacaggacagctgttgctcccgggagaatgtactggatg
agtcaggctttcagaaatatgttctatacccaatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_44841243_44842385
seq2: B6Ng01-150P03.b_46_1169

seq1  GAATTCTTTGTTTAGCTCTGAGCCCCATAAATTTCATTTTCTAACAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGAGCCCCATAAATTTCATTTTCTAACAATGT  50

seq1  AATTGTTTAGTTGTATTTAGTGCTAAGAAGGAGTAATGAGGACAAGGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTAGTTGTATTTAGTGCTAAGAAGGAGTAATGAGGACAAGGTAC  100

seq1  ATTGTCTGCACTTGATCTTTTTCTGGAAATTGCATTTGATAGATATTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTGCACTTGATCTTTTTCTGGAAATTGCATTTGATAGATATTTTA  150

seq1  TTACACACTGTGTGATAACTTTATGTCACAAAAGACTCTGCCTCCTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACACTGTGTGATAACTTTATGTCACAAAAGACTCTGCCTCCTCACA  200

seq1  ATTTTGATTACTCCTCAGCTTGGGTAGGTCCCACCCCACCCCAACCCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATTACTCCTCAGCTTGGGTAGGTCCCACCCCACCCCAACCCCCA  250

seq1  CTCCCACCCCCACCCCCGGGTGTGACTCCTGCCTTAAAGGAGACAAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACCCCCACCCCCGGGTGTGACTCCTGCCTTAAAGGAGACAAACAA  300

seq1  CTATTTCAGGCAAGACAAATTTTACAAAAAACCCTGCAGGTCTCTTGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCAGGCAAGACAAATTTTACAAAAAACCCTGCAGGTCTCTTGAAT  350

seq1  GTAGAAAGAAATGCTTATAAATTATGTAGGTAAATAGATTATTTTAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAGAAATGCTTATAAATTATGTAGGTAAATAGATTATTTTAAGAA  400

seq1  ATATTTTAAATTTCAAAACCGGTAAAAGGTAAAACAGACCAAAACAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAAATTTCAAAACCGGTAAAAGGTAAAACAGACCAAAACAATGA  450

seq1  ATTGCTTTATTGATAAAAAGATCCTAAAGCTATCTTTAGATAAGTTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTATTGATAAAAAGATCCTAAAGCTATCTTTAGATAAGTTTCTC  500

seq1  AGTTTTGAAATGTGCTTATTTATCTGATAATTATGCATCTTTGGATACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGAAATGTGCTTATTTATCTGATAATTATGCATCTTTGGATACCA  550

seq1  AGTAAATGTTAGATTCATTAATCTGCAAAGTAGGTTGTAAAATACTCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATGTTAGATTCATTAATCTGCAAAGTAGGTTGTAAAATACTCCAG  600

seq1  ATTCTAGTTCTAGATGTGCTGTTGTTGACTAGTTGTACAAATATGTCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGTTCTAGATGTGCTGTTGTTGACTAGTTGTACAAATATGTCAGA  650

seq1  GTTTTACCTCCTGGGATCTCTTTTTCTTATTGTATACTTGAATTGTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACCTCCTGGGATCTCTTTTTCTTATTGTATACTTGAATTGTTTTT  700

seq1  AAATTTTTCAGTTCTCCAGTGTTCTGGTCTATTAACTTGCACATTCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTCAGTTCTCCAGTGTTCTGGTCTATTAACTTGCACATTCTTTT  750

seq1  AAAGGAATGTGTGATATAATCATATATTCATTTAAT-AAGGCTGTCTTCA  799
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAAGGAATGTGTGATATAATCATATATTCATTTAATAAAGGCTGTCTTCA  800

seq1  AATTTACATTTCCCCAAGTTATTGCAGAATAAATAGATCAACAACATTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACATTTCCCCAAGTTATTGCAGAATAAATAGATCAACAACATTGA  850

seq1  AAAGCCAG-AAGGGAACTGAAGGTGAGAAGCATTTTTACTTAAAAGTTTT  898
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  AAAGCCAGAAAGGGAACTGAAGGTGAGAAGCATTTTTACTTAAAAG-TTT  899

seq1  TTGGTTCTTAACCAACATTTGGTATGATACTTGCTCTGTGTGTGTGTCTG  948
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCTTAACCAACATTTGGTATGATACTTGCTCTGTGTGTGTGTCTG  949

seq1  TGTGCGTGAGTGTGTGAGTGTGTGTGTGTATGTTGAAATTCATCAACCAT  998
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  TGTGCGTGAGTGTGTGAGTGTGTGTGTGTATG-TGAAATTCATC-ACCAT  997

seq1  CAACCAAGAAGATTATTTTCTATTCCAGATATTTTATAAAACATCATTTA  1048
      || |  |||    || |||||| |||||| || |||| |||||||| |  
seq2  CACCAGAGA----TA-TTTCTA-TCCAGA-ATATTAT-AAACATCAAT--  1037

seq1  TTCTGTTTTTCTTCCCCAAAAGACATTTGGAACTCAAATTTACATATCTA  1098
       |||| ||||||  ||||||||||||| || |||| ||||||| ||||| 
seq2  ATCTG-TTTTCT--CCCAAAAGACATTAGG-ACTCTAATTTAC-TATCT-  1081

seq1  AGTGGCAAAGCGCTAAACTTTAATTATCCAGTAGTTTAACATAAA  1143
      |||||||||||||| |||||  |||||||   |||||||||||||
seq2  AGTGGCAAAGCGCTTAACTT--ATTATCCGAGAGTTTAACATAAA  1124

seq1: chr4_44918772_44919978
seq2: B6Ng01-150P03.g_67_1252 (reverse)

seq1  TGATTG-----TGAACATATTTCCTGAAAGCCCTGTCACTCATCACAGCT  45
      ||||||      |||||||||| |||||||||   | ||||||| ||| |
seq2  TGATTGGGTATAGAACATATTT-CTGAAAGCC---TGACTCATC-CAG-T  44

seq1  ACATTTTCTCCCGGGGAGCCACAGGCCTGTCCTGGTCTCTTGTCA-GCTC  94
      |||  ||||||| |||||| ||||  |||||||| |||||||||| ||||
seq2  ACA--TTCTCCC-GGGAGCAACAG--CTGTCCTGTTCTCTTGTCAGGCTC  89

seq1  ATACATTTTGGTTATTCATATACCAAATACAGTACTGGGGGTTTTTTTCT  144
      |||||||     || ||||||| |||||||||||||||||  ||||||| 
seq2  ATACATT----GTAATCATATA-CAAATACAGTACTGGGG--TTTTTTCC  132

seq1  TCCCTTTTGCAAATGCTCGCATGTTAGTAAGGCTAATCCTTTCTCCTGTG  194
      ||||||||||||||||||||||| |||||| ||||   |||||| |||||
seq2  TCCCTTTTGCAAATGCTCGCATG-TAGTAA-GCTA--TCTTTCT-CTGTG  177

seq1  CTGTGCTCCCAGCAGGGCTGCGTTCCAGGCTCCCTCAGTACAAGGCAGAC  244
      |||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  CTGTGCTCCCAGCA-GGCTGCGTT-CAGGCTCCCTCAGTACAAGGCAGAC  225

seq1  AACTGGCCGAGGGGAGCTGAGGAGGAGGAAAGGCCGCTTAGCCTTGTTTT  294
      |||||||||| |||||||||| |||| ||||||||||||||||||| |||
seq2  AACTGGCCGA-GGGAGCTGAGAAGGA-GAAAGGCCGCTTAGCCTTG-TTT  272

seq1  GTGTTTGTTCATTGTTGTGGAAATATGAG-AACTGGTGGCAAGGGCCTTG  343
      ||||||||||||||||||||||| ||||| ||||||||||||||||||||
seq2  GTGTTTGTTCATTGTTGTGGAAAAATGAGAAACTGGTGGCAAGGGCCTTG  322

seq1  TCTGTTGAGCACTTGAGTCTTGGTCTGCTGTCAGGGGCTGTTTAAGATTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGAGCACTTGAGTCTTGGTCTGCTGTCAGGGGCTGTTTAAGATTG  372

seq1  AGTGTTTTATTTTCTTTGATGTACGCATTTGAGAATAGGGAAGTGGGAAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTATTTTCTTTGATGTACGCATTTGAGAATAGGGAAGTGGGAAT  422

seq1  TAAACAACAGATGCACTAAGCCGTTGTTCTCATAAAACAATAATTAGCAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAACAGATGCACTAAGCCGTTGTTCTCATAAAACAATAATTAGCAC  472

seq1  CTGATAAAATTCAATATGGTTCAAAATGCACAATATAAACTCTCAATTCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAAATTCAATATGGTTCAAAATGCACAATATAAACTCTCAATTCA  522

seq1  TCTGGCATGGCAAAGTATGTTGATTCATCTTTGAATGTTATGAATAATAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCATGGCAAAGTATGTTGATTCATCTTTGAATGTTATGAATAATAA  572

seq1  CACTCAGTTATTCATGTATGTTTATTATCCAAAGTACAATAGACAGGAAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGTTATTCATGTATGTTTATTATCCAAAGTACAATAGACAGGAAA  622

seq1  ACTAGTTGGGCAAAAGTTGGCAAGCAGTGAACCACATTGCCGAAACAGAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTGGGCAAAAGTTGGCAAGCAGTGAACCACATTGCCGAAACAGAT  672

seq1  GTACGAGTGCGCTGTGTGTGTTCTGGTGTTCATCTACCTAAATGCCAGGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGAGTGCGCTGTGTGTGTTCTGGTGTTCATCTACCTAAATGCCAGGA  722

seq1  AGGTGGGAGCCGTGGGCCAGGACTGCATGATGATGCTGTGTGTGTTTTCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGAGCCGTGGGCCAGGACTGCATGATGATGCTGTGTGTGTTTTCA  772

seq1  CTTCAGCTGACTACCCATTCAGTCTAAATGTTTTAATCAGACCAAGTTTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTGACTACCCATTCAGTCTAAATGTTTTAATCAGACCAAGTTTT  822

seq1  CACTTGCAGTAGTTAGCTTCTTTCTTTAGAAGTTTATTCTATCTAAATTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCAGTAGTTAGCTTCTTTCTTTAGAAGTTTATTCTATCTAAATTT  872

seq1  TCCATGCTTAGCCATTCTGCTTGCTGAGAATTTTTAAAATATCTCTGTGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCTTAGCCATTCTGCTTGCTGAGAATTTTTAAAATATCTCTGTGT  922

seq1  ACAATACTCAGGAGTGTTAAAAAGAAGTCACCAAAGTTTAGCATGTAGGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACTCAGGAGTGTTAAAAAGAAGTCACCAAAGTTTAGCATGTAGGA  972

seq1  AAAATAGGATTTTAAATTTTGATTAATGATTGCGGTTACATTTTGTATTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGGATTTTAAATTTTGATTAATGATTGCGGTTACATTTTGTATTT  1022

seq1  AGAATTAACATGTATGCTCTCCAATGACCTCTGCTTTGAAGTCTTTTTTA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAACATGTATGCTCTCCAATGACCTCTGCTTTGAAGTCTTTTTTA  1072

seq1  ATTGTAGTACTGTTATCTAATAAAAGAGAAGAAGTTTCATATCATCCACT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGTACTGTTATCTAATAAAAGAGAAGAAGTTTCATATCATCCACT  1122

seq1  CCCATATCAGTCATCATCTTCCTGTACAGGGCAATCAGATGATTGTTCAA  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATCAGTCATCATCTTCCTGTACAGGGCAATCAGATGATTGTTCAA  1172

seq1  AAACTAAGGAATTC  1207
      ||||||||||||||
seq2  AAACTAAGGAATTC  1186