BAC Information

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BAC

Clone NameB6Ng01-152B21
Chromosome4 (Build37)
Map Location 80,565,702 - 80,698,911
singlet/doubletdoublet
Overlap geneD4Bwg0951e
Upstream geneTyrp1
Downstream geneMpdz, LOC100040131, LOC100040144, EG668895, LOC100040164
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-152B21.bB6Ng01-152B21.g
ACCDH947771DH947772
length1,1331,035
definitionDH947771|Mus musculus domesticus DNA, BAC clone: B6Ng01-152B21, 5' end.DH947772|Mus musculus domesticus DNA, BAC clone: B6Ng01-152B21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,697,780 - 80,698,911)(80,565,702 - 80,566,739)
sequence
gaattccatagtcctgcagatttaccatctgaagaaaacataccacactc
cagactgacatgaatgcctgaaaaaaattcccagaaattcaattactaga
caccttttgtcctcagtagtcacatcctgttgctgtggttgcttgtgtct
ggctgctactgccagacacccttgtcattgtggaagcttggaactcgtac
cttttgtgaatgttcctctaatggttccatgagcctgtttttccatctct
caatactgaaggttgccttacctcgctcaagtagagatttttagattcct
caagatcatctgactcaaaaaacaatgcatttattcagttataaacacaa
ttttcatttgctattgtttagtgatatagattaattgtgtgtgatttggg
cttctgtatattttcctcatggagctgagctctcttttaagcattgttga
tagccataagatcatcactgaccaagaagttgctggagatctacagagag
gggccactgggcagcatgttattcatagaagtaataccaggtagtcctag
tgacttgtctaagaacacacaactcttcggagatgggcctcctgactcca
aacaagcagaatgataagggtgattactgtccatggcactctattgcaca
aattatgatgattgttattatgctttgtggtgagggagtttgatttccat
tcctgttaatattgtgatttactttctaaaaataaatttaagatgacaaa
ccaacaaggaacctaatatatgaaggaaaactagagattaattgggaaag
aaagggataaacctgccaggactgaccacagcacatgtgcatgctctgta
gagaaaacatgcagggctcccttgcagaaatcttaatagatcctagacat
tgcaatgtaaagctatgaagtagcacggatgatcttgccagacttcgaag
ttgtgttaacagcatgttttcggttatgtaaaggtagttaaccataattt
tgcattcagtttgccatattcaatttcaggaccagcggagcatacgagtt
tctttcctccctcatctgttgggaggtttgggcatcagttcggccggcac
tcagcgaattgaatgctgatgacaacctgaaag
gaattcatgttctttcatacacatagagaaagaaagatgcctggtgcagt
ttgcacacttttagctgaagaggagtaataatttgacagtggcacatgac
agctagatagttttagggtatgaactgtccttggcttactgtttagtctg
gaaccaggacattatgagggcagtgtggcttggacacattatattgaggt
atttgaaacagaaaacttatagtgaccatcacataaacaaggttcacatg
ggaaagaagagtgggtaggaagagaaactctaggtttctttaatgttctc
tctaggatcataatattggtaggagtttcaatgaatcaatctatttgtgt
atgtgtatgttcatttgaaactatattaattagaaagatttaaaatgacc
attacataatctagtgttgcaacaaaaccagtaactgtatatttccgtct
ggatatttttgtctgtacacagctgtgtgaatactgcctttccccaaatc
atcaggctttgccttctgagaagtaccagtgcatggaattttcccgccta
taatcagcctttctaattcaaatcctctacagggaaaattctaaatatgt
ggcagacatttaaaattcatttgatttgaaatattttagacttttattaa
aggttggaaacaaaaaacagggaccaaatcaatgtattgtgcttacccag
ggccctctaaactttatgtctgtccaactcactctcttcattcgccctct
ttctaaaagacacacacacacacacacacacacacacacacacacactcc
ccacaaatgattcttaaatctctaaagacagcaagtataatattgctgtg
cggctctacttctcaggaacttaatgaggatttacccaaggcagacattc
tgcatgggcagtgtctttttgcctctcctggtatgatgttgcacaataat
gaaataatcactaacatatctcactctccccattgatacagatttgtcct
tagaagtttttgtgatggaacactaagcctctaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_80697780_80698911
seq2: B6Ng01-152B21.b_43_1175 (reverse)

seq1  CTTTCAGCTGTGCATCAGCATCAAATCTGCTTGAGTGCTGCCGAAACTGA  50
      ||||||| |   |||||||||  |||  || ||||||| | |  ||||||
seq2  CTTTCAGGTTGTCATCAGCATTCAATTCGC-TGAGTGCCGGCCGAACTGA  49

seq1  TGCCCAAACATCACAACAGATGA-GGAGG-AAGAAACTCGTTATGCTCTG  98
      ||||||||| || |||||||||| ||||| |||||||||| ||||||| |
seq2  TGCCCAAACCTCCCAACAGATGAGGGAGGAAAGAAACTCG-TATGCTCCG  98

seq1  CTTGTTTCTG-AATTGAATATGGC-AACTGAATGCAAAA-TATGTGTAAA  145
      | || | ||| ||||||||||||| |||||||||||||| |||| || ||
seq2  C-TGGTCCTGAAATTGAATATGGCAAACTGAATGCAAAATTATG-GTTAA  146

seq1  CTACCTTTACATAACCGAAAACATGCTGTTAACACAACTTCGAAGTCTGG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTTACATAACCGAAAACATGCTGTTAACACAACTTCGAAGTCTGG  196

seq1  CAAGATCATCCCTGCTACTTCATAGCTTTACATTGCAATGTCTAGGATCT  245
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCATCCGTGCTACTTCATAGCTTTACATTGCAATGTCTAGGATCT  246

seq1  ATTAAGATTTCTGCAAGGGAGCCCTGCATGTTTTCTCTACAGAGCATGCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGATTTCTGCAAGGGAGCCCTGCATGTTTTCTCTACAGAGCATGCA  296

seq1  CATGTGCTGTGGTCAGTCCTGGCAGGTTTATCCCTTTCTTTCCCAATTAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCTGTGGTCAGTCCTGGCAGGTTTATCCCTTTCTTTCCCAATTAA  346

seq1  TCTCTAGTTTTCCTTCATATATTAGGTTCCTTGTTGGTTTGTCATCTTAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGTTTTCCTTCATATATTAGGTTCCTTGTTGGTTTGTCATCTTAA  396

seq1  ATTTATTTTTAGAAAGTAAATCACAATATTAACAGGAATGGAAATCAAAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTTAGAAAGTAAATCACAATATTAACAGGAATGGAAATCAAAC  446

seq1  TCCCTCACCACAAAGCATAATAACAATCATCATAATTTGTGCAATAGAGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCACCACAAAGCATAATAACAATCATCATAATTTGTGCAATAGAGT  496

seq1  GCCATGGACAGTAATCACCCTTATCATTCTGCTTGTTTGGAGTCAGGAGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGACAGTAATCACCCTTATCATTCTGCTTGTTTGGAGTCAGGAGG  546

seq1  CCCATCTCCGAAGAGTTGTGTGTTCTTAGACAAGTCACTAGGACTACCTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTCCGAAGAGTTGTGTGTTCTTAGACAAGTCACTAGGACTACCTG  596

seq1  GTATTACTTCTATGAATAACATGCTGCCCAGTGGCCCCTCTCTGTAGATC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTACTTCTATGAATAACATGCTGCCCAGTGGCCCCTCTCTGTAGATC  646

seq1  TCCAGCAACTTCTTGGTCAGTGATGATCTTATGGCTATCAACAATGCTTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAACTTCTTGGTCAGTGATGATCTTATGGCTATCAACAATGCTTA  696

seq1  AAAGAGAGCTCAGCTCCATGAGGAAAATATACAGAAGCCCAAATCACACA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGCTCAGCTCCATGAGGAAAATATACAGAAGCCCAAATCACACA  746

seq1  CAATTAATCTATATCACTAAACAATAGCAAATGAAAATTGTGTTTATAAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAATCTATATCACTAAACAATAGCAAATGAAAATTGTGTTTATAAC  796

seq1  TGAATAAATGCATTGTTTTTTGAGTCAGATGATCTTGAGGAATCTAAAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAATGCATTGTTTTTTGAGTCAGATGATCTTGAGGAATCTAAAAA  846

seq1  TCTCTACTTGAGCGAGGTAAGGCAACCTTCAGTATTGAGAGATGGAAAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACTTGAGCGAGGTAAGGCAACCTTCAGTATTGAGAGATGGAAAAA  896

seq1  CAGGCTCATGGAACCATTAGAGGAACATTCACAAAAGGTACGAGTTCCAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCATGGAACCATTAGAGGAACATTCACAAAAGGTACGAGTTCCAA  946

seq1  GCTTCCACAATGACAAGGGTGTCTGGCAGTAGCAGCCAGACACAAGCAAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCACAATGACAAGGGTGTCTGGCAGTAGCAGCCAGACACAAGCAAC  996

seq1  CACAGCAACAGGATGTGACTACTGAGGACAAAAGGTGTCTAGTAATTGAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAACAGGATGTGACTACTGAGGACAAAAGGTGTCTAGTAATTGAA  1046

seq1  TTTCTGGGAATTTTTTTCAGGCATTCATGTCAGTCTGGAGTGTGGTATGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGGAATTTTTTTCAGGCATTCATGTCAGTCTGGAGTGTGGTATGT  1096

seq1  TTTCTTCAGATGGTAAATCTGCAGGACTATGGAATTC  1132
      |||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCAGATGGTAAATCTGCAGGACTATGGAATTC  1133

seq1: chr4_80565702_80566739
seq2: B6Ng01-152B21.g_68_1102

seq1  GAATTCATGTTCTTTCATACACATAGAGAAAGAAAGATGCCTGGTGCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTCTTTCATACACATAGAGAAAGAAAGATGCCTGGTGCAGT  50

seq1  TTGCACACTTTTAGCTGAAGAGGAGTAATAATTTGACAGTGGCACATGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACACTTTTAGCTGAAGAGGAGTAATAATTTGACAGTGGCACATGAC  100

seq1  AGCTAGATAGTTTTAGGGTATGAACTGTCCTTGGCTTACTGTTTAGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGATAGTTTTAGGGTATGAACTGTCCTTGGCTTACTGTTTAGTCTG  150

seq1  GAACCAGGACATTATGAGGGCAGTGTGGCTTGGACACATTATATTGAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGGACATTATGAGGGCAGTGTGGCTTGGACACATTATATTGAGGT  200

seq1  ATTTGAAACAGAAAACTTATAGTGACCATCACATAAACAAGGTTCACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAACAGAAAACTTATAGTGACCATCACATAAACAAGGTTCACATG  250

seq1  GGAAAGAAGAGTGGGTAGGAAGAGAAACTCTAGGTTTCTTTAATGTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAGAGTGGGTAGGAAGAGAAACTCTAGGTTTCTTTAATGTTCTC  300

seq1  TCTAGGATCATAATATTGGTAGGAGTTTCAATGAATCAATCTATTTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGATCATAATATTGGTAGGAGTTTCAATGAATCAATCTATTTGTGT  350

seq1  ATGTGTATGTTCATTTGAAACTATATTAATTAGAAAGATTTAAAATGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATGTTCATTTGAAACTATATTAATTAGAAAGATTTAAAATGACC  400

seq1  ATTACATAATCTAGTGTTGCAACAAAACCAGTAACTGTATATTTCCGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATAATCTAGTGTTGCAACAAAACCAGTAACTGTATATTTCCGTCT  450

seq1  GGATATTTTTGTCTGTACACAGCTGTGTGAATACTGCCTTTCCCCAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTTTTGTCTGTACACAGCTGTGTGAATACTGCCTTTCCCCAAATC  500

seq1  ATCAGGCTTTGCCTTCTGAGAAGTACCAGTGCATGGAATTTTCCCGCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCTTTGCCTTCTGAGAAGTACCAGTGCATGGAATTTTCCCGCCTA  550

seq1  TAATCAGCCTTTCTAATTCAAATCCTCTACAGGGAAAATTCTAAATATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGCCTTTCTAATTCAAATCCTCTACAGGGAAAATTCTAAATATGT  600

seq1  GGCAGACATTTAAAATTCATTTGATTTGAAATATTTTAGACTTTTATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACATTTAAAATTCATTTGATTTGAAATATTTTAGACTTTTATTAA  650

seq1  AGGTTGGAAACAAAAAACAGGGACCAAATCAATGTATTGTGCTTACCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGAAACAAAAAACAGGGACCAAATCAATGTATTGTGCTTACCCAG  700

seq1  GGCCCTCTAAACTTTATGTCTGTCCAACTCACTCTCTTCATTCGCCCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCTAAACTTTATGTCTGTCCAACTCACTCTCTTCATTCGCCCTCT  750

seq1  TTCTAAAAGACACACACACACACACACACACACACACACACACACACTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAAGACACACACACACACACACACACACACACACACACACACTCC  800

seq1  CCACAAATGATTCTTAAATCTCTAAAGACAGCAAGTATAATATTGCTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAATGATTCTTAAATCTCTAAAGACAGCAAGTATAATATTGCTGTG  850

seq1  CGGCTCTACTTCTCAGGAACTTAATGAGGATTTACCCAAGGCAGACATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTCTACTTCTCAGGAACTTAATGAGGATTTACCCAAGGCAGACATTC  900

seq1  TGCATGGGCAGTGTCTTTTTGCCTCTCCTGGGTATGATGTTGCACAATAA  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGCATGGGCAGTGTCTTTTTGCCTCTCCT-GGTATGATGTTGCACAATAA  949

seq1  TGAAATAATCACTAACATATCTCACTCTTCCCCATTGAATACAGATTTGT  1000
      ||||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  TGAAATAATCACTAACATATCTCACTC-TCCCCATTG-ATACAGATTTGT  997

seq1  CCTTAGAAGTTTTTGTGATGGAACACTAAGCCTCTAGA  1038
      ||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGAAGTTTTTGTGATGGAACACTAAGCCTCTAGA  1035