BAC Information

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BAC

Clone NameB6Ng01-153B16
Chromosome4 (Build37)
Map Location 66,193,134 - 66,194,328
singlet/doubletsinglet
Overlap genenone
Upstream geneAstn2, Trim32
Downstream geneLOC667499, Tlr4, LOC100039379, Hmgb1-rs18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153B16.b
ACCDH948509
length1,181
definitionDH948509|Mus musculus domesticus DNA, BAC clone: B6Ng01-153B16, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgcccctctcaatattgtccatgaaactttctgaacagtggt
ttgagttaatccttattccatacaatgaatcatcaatttaaaaaaataga
acactaattccataatgttatcatcaaaatggaaaaaaaaattcattccg
cagagttggttttactataccaataaaggacgagcatttatctaagtcag
acactacaattgatggttataaactactgtaataatgaagaccaaattga
attatcttcagccatgattaaatagcacagaagattttttaataaaccaa
acctcattttactttgtcggaaatagtttggattaagttagctggctgaa
tggtgaaagaatgctaaaggcctttcaataaatcagtgaaataggaatga
agtagagggatggccaaatatatgtctagaagagtgaaaaggtggagagt
tatagaaataagttgtagagtctacagaagacagaacctttcaggtacat
tcaaagaatgggacaggtccttttgggctagaaatatgtactcaagagta
atcataacaattactgtcatatgggggacttttggtatagcattggaaat
gtaaatgagttaaatacctaataaaaaatggaaaaaaaaaaacaaaaaaa
aacaattactgtcagccatcattttctgaacatcttctctgtgccaggca
ctaaataactttgtagggccgacagtttttaaagtagcctaagacataaa
aatgcattcatactatgctcaagaaattttatggcattagaatttaaata
aatgtttatcaaacttttaaaatgcaggatccctttctttgtacattatt
ccattcaattaacattaatggttttgaatattagagtagaggagaagaga
acacctgtcccttcatgtatgagattgtttctcttcctgaaaaaatcatt
tccacccatggacacagttataagatttcctagtttcctgacttcaagtc
accatgaaagtcccactatgaaacatgtcacagactttaaagcagtagta
gaaaccaaaaagaagaaaggctgatagaaaaatgtccagaaataaattac
aaagaggctctaaacgtgcccggttaaacaaaatttattttggaatttgt
ccttaaattctctttttaagtacatattaca
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_66193134_66194328
seq2: B6Ng01-153B16.b_42_1222 (reverse)

seq1  TGTAATATGTTAATTTAAAAAGAGAATTTTAAGAGAACAGAATTCCAAAA  50
      ||||||||||  | ||||||||||||||| | || |    ||||||||||
seq2  TGTAATATGT--ACTTAAAAAGAGAATTTAAGGACA----AATTCCAAAA  44

seq1  ATATATTTGTTTTAAACAGAGCACGTTTTAGACACTCTTTGTAAACTATT  100
        |  |||||||  ||| | ||||| ||||||  ||||||||||  ||||
seq2  TAAATTTTGTTT--AACCGGGCACG-TTTAGAGCCTCTTTGTAATTTATT  91

seq1  TCCTGGCATTTTCTTATCAGCCTTTCTCTTTTTCTGTTTCTACTTACTGC  150
      ||  | ||||||  |||||||||||||  ||||  |||||||| ||||||
seq2  TCTGGACATTTTTCTATCAGCCTTTCTTCTTTTTGGTTTCTAC-TACTGC  140

seq1  TTTTAAGTCTGTGGACATGTTTCATAGTGTGGACTTTCATGTGGATTTAG  200
      ||| |||||||| |||||||||||||||| |||||||||||  || || |
seq2  TTTAAAGTCTGT-GACATGTTTCATAGTG-GGACTTTCATGGTGACTT-G  187

seq1  AGGTCAGGAAACTATGAAATCTTATAAACTGTGTCCATGGGTGGAAATGA  250
      | |||||||||||| |||||||||| ||||||||||||||||||||||||
seq2  AAGTCAGGAAACTAGGAAATCTTAT-AACTGTGTCCATGGGTGGAAATGA  236

seq1  TTTTTTTCAGGAAGAGAAACAATCTCATACATGAAGGGACATGTGTTCTC  300
       |||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  -TTTTTTCAGGAAGAGAAACAATCTCATACATGAAGGGACAGGTGTTCTC  285

seq1  TTCTCCTCTACTCTAATATTCAAAACCATTAATGTTAATTGAATGGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCTACTCTAATATTCAAAACCATTAATGTTAATTGAATGGAATA  335

seq1  ATGTACAAAGAAAGGAATCCTGCATTTTAAAAGTTTGATAAACATTTATT  400
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGTACAAAGAAAGGGATCCTGCATTTTAAAAGTTTGATAAACATTTATT  385

seq1  TAAATTCTAATGCCAT-AAATTTCTTGAGCATAGTATGAATGCA-TTTTA  448
      |||||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  TAAATTCTAATGCCATAAAATTTCTTGAGCATAGTATGAATGCATTTTTA  435

seq1  TGTCTTAGGCTACTTTAAAAACTGTCGGCCCTACAAAGTTATTTAGTGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAGGCTACTTTAAAAACTGTCGGCCCTACAAAGTTATTTAGTGCC  485

seq1  TGGCACAGAGAAGATGTTCAGAAAATGATGGCTGACAGTAATTGTTTTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAGAGAAGATGTTCAGAAAATGATGGCTGACAGTAATTGTTTTTT  535

seq1  TTTGTTTTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTT  585

seq1  CCAATGCTATACCAAAAGTCCCCCATATGACAGTAATTGTTATGATTACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGCTATACCAAAAGTCCCCCATATGACAGTAATTGTTATGATTACT  635

seq1  CTTGAGTACATATTTCTAGCCCAAAAGGACCTGTCCCATTCTTTGAATGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTACATATTTCTAGCCCAAAAGGACCTGTCCCATTCTTTGAATGT  685

seq1  ACCTGAAAGGTTCTGTCTTCTGTAGACTCTACAACTTATTTCTATAACTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAAGGTTCTGTCTTCTGTAGACTCTACAACTTATTTCTATAACTC  735

seq1  TCCACCTTTTCACTCTTCTAGACATATATTTGGCCATCCCTCTACTTCAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTTTTCACTCTTCTAGACATATATTTGGCCATCCCTCTACTTCAT  785

seq1  TCCTATTTCACTGATTTATTGAAAGGCCTTTAGCATTCTTTCACCATTCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTTCACTGATTTATTGAAAGGCCTTTAGCATTCTTTCACCATTCA  835

seq1  GCCAGCTAACTTAATCCAAACTATTTCCGACAAAGTAAAATGAGGTTTGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTAACTTAATCCAAACTATTTCCGACAAAGTAAAATGAGGTTTGG  885

seq1  TTTATTAAAAAATCTTCTGTGCTATTTAATCATGGCTGAAGATAATTCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAAAAAATCTTCTGTGCTATTTAATCATGGCTGAAGATAATTCAA  935

seq1  TTTGGTCTTCATTATTACAGTAGTTTATAACCATCAATTGTAGTGTCTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCTTCATTATTACAGTAGTTTATAACCATCAATTGTAGTGTCTGA  985

seq1  CTTAGATAAATGCTCGTCCTTTATTGGTATAGTAAAACCAACTCTGCGGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATAAATGCTCGTCCTTTATTGGTATAGTAAAACCAACTCTGCGGA  1035

seq1  ATGAATTTTTTTTTCCATTTTGATGATAACATTATGGAATTAGTGTTCTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTTTTTTTTCCATTTTGATGATAACATTATGGAATTAGTGTTCTA  1085

seq1  TTTTTTTAAATTGATGATTCATTGTATGGAATAAGGATTAACTCAAACCA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAATTGATGATTCATTGTATGGAATAAGGATTAACTCAAACCA  1135

seq1  CTGTTCAGAAAGTTTCATGTACAATATTGAGAGGTGGCAGAGAATTC  1195
      ||||||||||||||||||| |||||||||||||| ||||||||||||
seq2  CTGTTCAGAAAGTTTCATGGACAATATTGAGAGG-GGCAGAGAATTC  1181