BAC Information

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BAC

Clone NameB6Ng01-153K12
Chromosome4 (Build37)
Map Location 57,729,262 - 57,864,776
singlet/doubletdoublet
Overlap genePalm2
Upstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik, 6430704M03Rik, Epb4.1l4b, Ptpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049, LOC100041513
Downstream geneAkap2, D630039A03Rik, Txn1, Txndc8, Svep1, Musk, Edg2, LOC675306, LOC433711, Olfr267, AI314180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153K12.bB6Ng01-153K12.g
ACCDH948908DH948909
length1,119908
definitionDH948908|Mus musculus domesticus DNA, BAC clone: B6Ng01-153K12, 5' end.DH948909|Mus musculus domesticus DNA, BAC clone: B6Ng01-153K12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,863,715 - 57,864,776)(57,729,262 - 57,730,172)
sequence
gaattcttgggcaaaggcaatgtactataatgctgctgtttgcttctgaa
acacatttaaattgcattccagaggcagacagccatctggacagacagga
ggagggaaactttaggagtagtctactgggactccaaggatagctacttc
cagcttcctttaacccctccagactccagaagctttgctaattggcgtaa
ttaaaatgagaaatgggcttccattagtgaaattagtggcttttctatta
gcataatgaatgctagaaataggtgaagtgggtggaaactccatctgtgc
atggagcctccacctgtggactgcaacctacacctgtggactggagcctc
cacctgtggactggaccctacacctgtggactggaccctacacctgtgga
ctggagcctacacctgtggactgcagcctccacctgtggactggggcctc
cacctgtggactgcagccttcacctgtggactggaacctccacctgtgga
ctgcagcctacacctgtggactggagcctatatctgtggactgcagccta
cacctgtggactgcagcctacacctgtggactggagcctacacctgtgga
ctggagcctacacctgtaactctttcatgaggagggtgagccccagcttg
gttccagtttgcagaatctcagggttgctattctttgaggtctgagaact
aaaagtttattttccaacactgggttcagagaacatagactgtttaatgt
ggtaacaaaatccttcctatgcaaggaaatttaaaatgcattatgaaaat
tgcaaaacggttaatgtataagtgtaaaaaaaaagtatatttttaagcaa
atttgcaccaaagtgcaactaaccaatattaacagctttcttgtgggaga
tttcttgagagagatggcattggatcagtattttcagagcaaaatggcta
aggtgaccaatccaataaatgtacatcaaagtacttctatcttcctaccc
ttttctcccctcgagacttttatgtaattatatgtgatgctaacaacagt
gggaagttaatgttgctaagcccgaaaaaaaaattataaatgccctctat
aatcaatctagtgctggag
gaattcagaggttggtagaaacggaaagaatgttatctttaaccataagt
gggactgtgaatttgtagttcttgagtcttttacccaattttatgccaaa
tctatgactccctatccctgcccatccctgtatccagttgcctgaatgtt
tcaaacctccaagtcttcacaccattgctgtttagctcccttcccagaca
gcatccttccccaagagaccacaccctttcccagcaaggcaaagtcataa
atacttttttttctatttcaataaaaataaccccccccccctagttccca
aataaataattttaaaatcttcatcaccggaatccacctccccccccacc
ccccactcttccaaaaaacccaactcaagcctgtgtgtgaacctcgctgc
caaggagacagctgcaaaaaataaaataaaaaataaaaaaacgacaagaa
ctatgcaattgcttgaaggtgctgagggagagccagttactcttgttacc
aaggaaacctcctggcttcccaattgggtgggcaggacaacatcactggg
ctttgcagtgacaggtctctatataaagaggtcagaagtcaccaggcact
gtctgatctgagccgttctgcgtgtagctccactgaattccatgatatgc
tattgggacaagcaggaagaaatgttttgtcttttgcagggttctggaat
attctttcttcctttcaaactcctgtcttagagagacaatataataaaaa
aaataaaatcttaacaagggttccagaaattttgtgtctgatgcagcttt
tcagttgaattgtaggctgttggtagattttcagttttacagctcactcg
gggtgagcggcacctctgtatatacacccattcgtgtttggtcagggggg
gggggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_57863715_57864776
seq2: B6Ng01-153K12.b_121_1165 (reverse)

seq1  CTCCAGCACCTAGAATTTGATTTTTAAGGGCATTTTATAAAATTCTTCTT  50
      |||||||| |||||  |||||| |  |||||| ||||| || || || ||
seq2  CTCCAGCA-CTAGA--TTGATTATAGAGGGCA-TTTAT-AATTTTTTTTT  45

seq1  CTGGCTTTAGCAACAAATAACATTCCCAACTGTGTTTAGCTTCACACTAA  100
      | ||| |||||||| | |||| ||||| |||||  ||||| ||||| || 
seq2  CGGGC-TTAGCAAC-ATTAAC-TTCCC-ACTGTTGTTAGCATCACA-TAT  90

seq1  AATAAACATAAAAGGCTCTGAGGTG-GGAAAGGGTAGGGAGAATAGAAGT  149
      |||  ||||||||| ||| |||| | | |||||||||| || ||||||||
seq2  AAT-TACATAAAAGTCTC-GAGGGGAGAAAAGGGTAGGAAG-ATAGAAGT  137

seq1  ACTTTTGATGTGACATTT-CTGGATTGGTCACTTTAGCCACTTTTGCTCT  198
      || |||||||| ||||||  |||||||||||| ||||||| |||||||||
seq2  AC-TTTGATGT-ACATTTATTGGATTGGTCACCTTAGCCA-TTTTGCTCT  184

seq1  GAAAATACTGATCCAGTGCCATTCTCTTCTCAAGAAAGTCTCCCACAAGA  248
      ||||||||||||||| ||||| |||| |||||||||| ||||||||||||
seq2  GAAAATACTGATCCAATGCCA-TCTC-TCTCAAGAAA-TCTCCCACAAGA  231

seq1  AAGCTGTTAATATTGGTTAGTTGCACTTTGGTGCAAATTTGCTTAAAAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTTAATATTGGTTAGTTGCACTTTGGTGCAAATTTGCTTAAAAAT  281

seq1  ATACTTTTTTTTTACACTTATACATTAACCGTTTTGCAATTTTCATAATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTTTTTTTACACTTATACATTAACCGTTTTGCAATTTTCATAATG  331

seq1  CATTTTAAATTTCCTTGCATAGGAAGGATTTTGTTACCACATTAAACAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAATTTCCTTGCATAGGAAGGATTTTGTTACCACATTAAACAGT  381

seq1  CTATGTTCTCTGAACCCAGTGTTGGAAAATAAACTTTTAGTTCTCAGACC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTCTCTGAACCCAGTGTTGGAAAATAAACTTTTAGTTCTCAGACC  431

seq1  TCAAAGAATAGCAACCCTGAGATTCTGCAAACTGGAACCAAGCTGGGGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAATAGCAACCCTGAGATTCTGCAAACTGGAACCAAGCTGGGGCT  481

seq1  CACCCTCCTCATGAAAGAGTTACAGGTGTAGGCTCCAGTCCACAGGTGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCCTCATGAAAGAGTTACAGGTGTAGGCTCCAGTCCACAGGTGTA  531

seq1  GGCTCCAGTCCACAGGTGTAGGCTGCAGTCCACAGGTGTAGGCTGCAGTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCAGTCCACAGGTGTAGGCTGCAGTCCACAGGTGTAGGCTGCAGTC  581

seq1  CACAGATATAGGCTCCAGTCCACAGGTGTAGGCTGCAGTCCACAGGTGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATATAGGCTCCAGTCCACAGGTGTAGGCTGCAGTCCACAGGTGGA  631

seq1  GGTTCCAGTCCACAGGTGAAGGCTGCAGTCCACAGGTGGAGGCCCCAGTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCAGTCCACAGGTGAAGGCTGCAGTCCACAGGTGGAGGCCCCAGTC  681

seq1  CACAGGTGGAGGCTGCAGTCCACAGGTGTAGGCTCCAGTCCACAGGTGTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTGGAGGCTGCAGTCCACAGGTGTAGGCTCCAGTCCACAGGTGTA  731

seq1  GGGTCCAGTCCACAGGTGTAGGGTCCAGTCCACAGGTGGAGGCTCCAGTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCAGTCCACAGGTGTAGGGTCCAGTCCACAGGTGGAGGCTCCAGTC  781

seq1  CACAGGTGTAGGTTGCAGTCCACAGGTGGAGGCTCCATGCACAGATGGAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTGTAGGTTGCAGTCCACAGGTGGAGGCTCCATGCACAGATGGAG  831

seq1  TTTCCACCCACTTCACCTATTTCTAGCATTCATTATGCTAATAGAAAAGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACCCACTTCACCTATTTCTAGCATTCATTATGCTAATAGAAAAGC  881

seq1  CACTAATTTCACTAATGGAAGCCCATTTCTCATTTTAATTACGCCAATTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATTTCACTAATGGAAGCCCATTTCTCATTTTAATTACGCCAATTA  931

seq1  GCAAAGCTTCTGGAGTCTGGAGGGGTTAAAGGAAGCTGGAAGTAGCTATC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCTTCTGGAGTCTGGAGGGGTTAAAGGAAGCTGGAAGTAGCTATC  981

seq1  CTTGGAGTCCCAGTAGACTACTCCTAAAGTTTCCCTCCTCCTGTCTGTCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGTCCCAGTAGACTACTCCTAAAGTTTCCCTCCTCCTGTCTGTCC  1031

seq1  AGATGGCTGTCTGC  1062
      ||||||||||||||
seq2  AGATGGCTGTCTGC  1045

seq1: chr4_57729262_57730172
seq2: B6Ng01-153K12.g_70_976

seq1  GAATTCAGAGGTTGGTAGAAACGGAAAGAATGTTATCTTTAACCATAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGTTGGTAGAAACGGAAAGAATGTTATCTTTAACCATAAGT  50

seq1  GGGACTGTGAATTTGTAGTTCTTGAGTCTTTTACCCAATTTTATGCCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGTGAATTTGTAGTTCTTGAGTCTTTTACCCAATTTTATGCCAAA  100

seq1  TCTATGACTCCCTATCCCTGCCCATCCCTGTATCCAGTTGCCTGAATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGACTCCCTATCCCTGCCCATCCCTGTATCCAGTTGCCTGAATGTT  150

seq1  TCAAACCTCCAAGTCTTCACACCATTGCTGTTTAGCTCCCTTCCCAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCTCCAAGTCTTCACACCATTGCTGTTTAGCTCCCTTCCCAGACA  200

seq1  GCATCCTTCCCCAAGAGACCACACCCTTTCCCAGCAAGGCAAAGTCATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTTCCCCAAGAGACCACACCCTTTCCCAGCAAGGCAAAGTCATAA  250

seq1  ATACTTTTTTTTCTATTTCAATAAAAATAACCCCCCCCCCCTAGTTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTTTTTTCTATTTCAATAAAAATAACCCCCCCCCCCTAGTTCCCA  300

seq1  AATAAATAATTTTAAAATCTTCATCACCGGAATCCACCTCCCCCCCCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAATTTTAAAATCTTCATCACCGGAATCCACCTCCCCCCCCACC  350

seq1  CCCCACTCTTCCAAAAAACCCAACTCAAGCCTGTGTGTGAACCTCGCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTCTTCCAAAAAACCCAACTCAAGCCTGTGTGTGAACCTCGCTGC  400

seq1  CAAGGAGACAGCTGCAAAAAATAAAATAAAAAATAAAAAAACGACAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGACAGCTGCAAAAAATAAAATAAAAAATAAAAAAACGACAAGAA  450

seq1  CTATGCAATTGCTTGAAGGTGCTGAGGGAGAGCCAGTTACTCTTGTTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCAATTGCTTGAAGGTGCTGAGGGAGAGCCAGTTACTCTTGTTACC  500

seq1  AAGGAAACCTCCTGGCTTCCCAATTGGGTGGGCAGGACAACATCACTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACCTCCTGGCTTCCCAATTGGGTGGGCAGGACAACATCACTGGG  550

seq1  C-TTGCAGTGACAGGTCTCTATATAAAGAGGTCAGAAGTCACCAGGCACT  599
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAGTGACAGGTCTCTATATAAAGAGGTCAGAAGTCACCAGGCACT  600

seq1  GTCTGATCTGAGCCGTTCTGCGTGTAGCTCCACTGAATTCCATGATATGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATCTGAGCCGTTCTGCGTGTAGCTCCACTGAATTCCATGATATGC  650

seq1  TATTGGGACAAGCAGGAAGAAATGTTTTGTCTTTTGCAGGGTTCTGGAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGGACAAGCAGGAAGAAATGTTTTGTCTTTTGCAGGGTTCTGGAAT  700

seq1  ATTCTTTCTTCCTTTCAAACTCCTGTCTTAGGAGAGACAAAAAAAAAAAA  749
      |||||||||||||||||||||||||||||| |||||||   || | || |
seq2  ATTCTTTCTTCCTTTCAAACTCCTGTCTTA-GAGAGAC---AATATAATA  746

seq1  AAAAAAAAAAAATCTTAACAAGGGTTCCAGAAAATGTTGTGTCTGATGCA  799
      ||||||| |||||||||||||||||||||| |||| ||||||||||||||
seq2  AAAAAAATAAAATCTTAACAAGGGTTCCAG-AAATTTTGTGTCTGATGCA  795

seq1  GCTTTTCAGTTGAA-TGTAGGCTGTTGGTAGGATTTTCAGCTTTACAGCT  848
      |||||||||||||| ||||||||||||||| ||||||||| |||||||||
seq2  GCTTTTCAGTTGAATTGTAGGCTGTTGGTA-GATTTTCAGTTTTACAGCT  844

seq1  CACTCGGGGTGAGCGGCACCTCTGTATATACACCCATTCGTGGTTGGTCA  898
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CACTCGGGGTGAGCGGCACCTCTGTATATACACCCATTCGTGTTTGGTCA  894

seq1  GGGGGGGGGGGGG  911
      |||||||||||||
seq2  GGGGGGGGGGGGG  907