BAC Information

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BAC

Clone NameB6Ng01-153L01
Chromosome4 (Build37)
Map Location 34,430,097 - 34,500,232
singlet/doubletdoublet
Overlap geneLOC665367, 2700059D21Rik
Upstream geneRngtt, LOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361
Downstream geneOrc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-153L01.bB6Ng01-153L01.g
ACCDH948929DH948930
length1,137961
definitionDH948929|Mus musculus domesticus DNA, BAC clone: B6Ng01-153L01, 5' end.DH948930|Mus musculus domesticus DNA, BAC clone: B6Ng01-153L01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,430,097 - 34,431,248)(34,499,264 - 34,500,232)
sequence
gaattccagccctttcttttgatagtttttctcagcagattggttccatt
ttgtttgtgaatctatttatacttacacaaccctaagtgatacttcagga
tcttgatctacttggtataatgtgaaatagaaattacaccaggctgtcca
aatgatacagaaagctcatgatactcgttaaaaatatagggttgccattt
aaaaaaaaatctataaaacatactttggggacaacgaaggaaataactat
aaatatgtaccagtagtataagttaggaagttattgtttgttgtgttaat
catctagctccagatgacaataacaaacactgagacaatcagcttacaaa
gaacagaggttatttgaactcactattttggaagttctagtccacaatta
aggttggccctattttgaatctgtaatgggataatgtattatgctaatgc
ataatgggaccaaatagcttgtatggacagtgtgatcactaatcttgact
gtttacctggtgagagttagaatcaccagtgagataactctctgggcatt
tctgtaaggaattacttaaattaggttaattacggtagaaaacccctcct
taaatgtggtcttcataggcaagagcctcagggggaactagcaggagaca
ctgagctgaacacaaggattcagttgagttctgcttcctgactttgactg
tagtagccacctcttcctcctgatgtagcatcttctctgacaagatggac
tgcacctccttgcctgtaacaataaatcaaaatgaacttttcctccttta
agttgcttctatcaggcattttgtcacagcaacaagacaagcaactaaat
acagccaagaaggaatacagccaagatgggctaggatcgtgccatgccta
tccaggacacacaccaatgacctaaagacttcctgccccactagccttaa
agaaaatgcttcttaaagtcccagactcccaaagaactggggaccaagct
atattggggagacattttacatgaaaaatacagcagtctatgaacgttcc
acgggttaggtatcattggatttaggatctatttttcatattaccataat
ctgatttttggaagccttttgggatgtctgggcatgg
gaattcattctccagcccggcggaggtggcgcccgcctttaatcccagca
cttgggaggcagagacaggtggatttctgagttcaagggcagcctggtct
gcaaagtgagtttcaggatagccagggctacacagagaaaccctgtctcg
aaaaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaggaatccattctccac
tttgttcccttgttttacagtaatgactaaagcagggggttctcagcgct
cctgataagcccaccctttagcacagtacctcatgcagtgatgatcccaa
ccctatgattattgttgctacttcataatgtaattttgctactgttataa
atcataatgcaaatatcggagcgttcccccgggggtcgcggcccacagat
tgagagccattcctctaacaactcggtcaggagtgcctttatacacatat
gtgggggagggcagcttaggtatgatccttaaataaacgtcttggaattt
ctacgaaaagtgactgcaactcataaaacagcttttggctacgttatatc
aaaaatttaagagccagactaggtaactgaggttctccatggatttgggt
atgaatatttaaatgtgacatttaaaaaaacacacatggtacagtcaatt
tcatatagatgttaccaaatacagaactctatagttcccatctttttaaa
atgaattactgagaaaaaaaaaatttaagctaagcaaaggctttaaggat
gatatcactaagggcttacacacacaaggctcacacactcttgcatgcca
cacacaaagaaacagacttacacttcagtccattaaagtttaccctaaga
ttgtgccgaggcacacaagatttccaatgcagagggggtaaaaaaatccc
taggtacacatttattatacaaaagcatcaaaggcccatccggcaaatct
tgaaaaatgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_34430097_34431248
seq2: B6Ng01-153L01.b_41_1177

seq1  GAATTCCAGCCCTTTCTTTTGATAGTTTTTCTCAGCAGATTGGTTCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCCTTTCTTTTGATAGTTTTTCTCAGCAGATTGGTTCCATT  50

seq1  TTGTTTGTGAATCTATTTATACTTACACAACCCTAAGTGATACTTCAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTGAATCTATTTATACTTACACAACCCTAAGTGATACTTCAGGA  100

seq1  TCTTGATCTACTTGGTATAATGTGAAATAGAAATTACACCAGGCTGTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATCTACTTGGTATAATGTGAAATAGAAATTACACCAGGCTGTCCA  150

seq1  AATGATACAGAAAGCTCATGATACTCGTTAAAAATATAGGGTTGCCATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATACAGAAAGCTCATGATACTCGTTAAAAATATAGGGTTGCCATTT  200

seq1  AAAAAAAAATCTATAAAACATACTTTGGGGACAACGAAGGAAATAACTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATCTATAAAACATACTTTGGGGACAACGAAGGAAATAACTAT  250

seq1  AAATATGTACCAGTAGTATAAGTTAGGAAGTTATTGTTTGTTGTGTTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTACCAGTAGTATAAGTTAGGAAGTTATTGTTTGTTGTGTTAAT  300

seq1  CATCTAGCTCCAGATGACAATAACAAACACTGAGACAATCAGCTTACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGCTCCAGATGACAATAACAAACACTGAGACAATCAGCTTACAAA  350

seq1  GAACAGAGGTTATTTGAACTCACTATTTTGGAAGTTCTAGTCCACAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAGGTTATTTGAACTCACTATTTTGGAAGTTCTAGTCCACAATTA  400

seq1  AGGTTGGCCCTATTTTGAATCTGTAATGGGATAATGTATTATGCTAATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGGCCCTATTTTGAATCTGTAATGGGATAATGTATTATGCTAATGC  450

seq1  ATAATGGGACCAAATAGCTTGTATGGACAGTGTGATCACTAATCTTGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGGACCAAATAGCTTGTATGGACAGTGTGATCACTAATCTTGACT  500

seq1  GTTTACCTGGTGAGAGTTAGAATCACCAGTGAGATAACTCTCTGGGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCTGGTGAGAGTTAGAATCACCAGTGAGATAACTCTCTGGGCATT  550

seq1  TCTGTAAGGAATTACTTAAATTAGGTTAATTACGGTAGAAAACCCCTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAGGAATTACTTAAATTAGGTTAATTACGGTAGAAAACCCCTCCT  600

seq1  TAAATGTGGTCTTCATAGGCAAGAGCCTCAGGGGGAACTAGCAGGAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTGGTCTTCATAGGCAAGAGCCTCAGGGGGAACTAGCAGGAGACA  650

seq1  CTGAGCTGAACACAAGGATTCAGTTGAGTTCTGCTTCCTGACTTTGACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTGAACACAAGGATTCAGTTGAGTTCTGCTTCCTGACTTTGACTG  700

seq1  TAGTAGCCACCTCTTCCTCCTGATGTAGCATCTTCTCTGACAAGATGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGCCACCTCTTCCTCCTGATGTAGCATCTTCTCTGACAAGATGGAC  750

seq1  TGCACCTCCTTGCCTGTAACAATAAATCAAAATGAACTTTTCCTCCTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTCCTTGCCTGTAACAATAAATCAAAATGAACTTTTCCTCCTTTA  800

seq1  AGTTGCTTCTATCAGGCATTTTGTCACAGCAACAAGACAAGCAACT-AAT  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGTTGCTTCTATCAGGCATTTTGTCACAGCAACAAGACAAGCAACTAAAT  850

seq1  ACAGCCAAGAAGGAATACAGCCAAGATGGGCTAGGATCGTGCCATGCCTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAAGAAGGAATACAGCCAAGATGGGCTAGGATCGTGCCATGCCTA  900

seq1  TCCAGGACACACACCAATGACCTAAAGACTTCCTGCCCCCACTAAGCCTT  949
      ||||||||||||||||||||||||||||||||||| ||||||| ||||||
seq2  TCCAGGACACACACCAATGACCTAAAGACTTCCTG-CCCCACT-AGCCTT  948

seq1  AAAGAAAATGC-TCTTAAAGTCCCAGAACCTCCCAAAAGAACCTGGGGAC  998
      ||||||||||| |||||||||||||||  ||||| |||||| ||||||||
seq2  AAAGAAAATGCTTCTTAAAGTCCCAGA--CTCCC-AAAGAA-CTGGGGAC  994

seq1  CAAGCTTATAATTGGGAGACAATTTACATGAAAAATACAGCAGTCTATGA  1048
      ||||| |||| | |||||||| ||||||||||||||||||||||||||||
seq2  CAAGC-TATATTGGGGAGACATTTTACATGAAAAATACAGCAGTCTATGA  1043

seq1  ACGTTCCCAACGGGTTAGGTTATCATTTGTATTTTAGTATCTATTTTTCA  1098
      |||||||  |||||||||| ||||||| |   ||||| ||||||||||||
seq2  ACGTTCC--ACGGGTTAGG-TATCATTGG--ATTTAGGATCTATTTTTCA  1088

seq1  TTATTTACCCATAATCCTGATTTTTTGAAAAGCCTTTTTGGATG-CTGGG  1147
       ||||   ||||||| ||||||||| |  ||||||||| ||||| |||||
seq2  -TATT--ACCATAAT-CTGATTTTTGG--AAGCCTTTTGGGATGTCTGGG  1132

seq1  CATGG  1152
      |||||
seq2  CATGG  1137

seq1: chr4_34499264_34500232
seq2: B6Ng01-153L01.g_71_1031 (reverse)

seq1  AACATTTTCTCAAAGTGTCTGCCGGATGGACCTTTGATTGCTTTTGTATA  50
      |||||||| ||||    | |||||||||| ||||||| ||||||||||||
seq2  AACATTTT-TCAA--GATTTGCCGGATGGGCCTTTGA-TGCTTTTGTATA  46

seq1  CTAAATGTGTACCTAGGGATTTTTTTTCCCCCTCTGCATTTGGAAATCTT  100
       ||||||||||||||||||||||||| ||||||||||| ||||||||| |
seq2  ATAAATGTGTACCTAGGGATTTTTTTACCCCCTCTGCA-TTGGAAATC-T  94

seq1  TGTGTGCCTTCGGCACAATCTTAGGGTAAACTTTAATGGACTTGAAGTGT  150
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  TGTGTGCC-TCGGCACAATCTTAGGGTAAACTTTAATGGAC-TGAAGTGT  142

seq1  AAGTCTGTTTCTTTTGTGTGTGGCATGCAAGAGTGTGTGAGCC-TGTGTG  199
      ||||||||||| ||||||||||||||||||||||||||||||| ||||||
seq2  AAGTCTGTTTC-TTTGTGTGTGGCATGCAAGAGTGTGTGAGCCTTGTGTG  191

seq1  TGTAAGCCCTTAGTGATATCATCCTTAAAGCCTTTGCTTAGCTTAAATTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCCCTTAGTGATATCATCCTTAAAGCCTTTGCTTAGCTTAAATTT  241

seq1  TTTTTTTCTCAGTAATTCATTTTAAAAAGATGGGAACTATAGAGTTCTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTCAGTAATTCATTTTAAAAAGATGGGAACTATAGAGTTCTGT  291

seq1  ATTTGGTAACATCTATATGAAATTGACTGTACCATGTGTGTTTTTTTAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTAACATCTATATGAAATTGACTGTACCATGTGTGTTTTTTTAAA  341

seq1  TGTCACATTTAAATATTCATACCCAAATCCATGGAGAACCTCAGTTACCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACATTTAAATATTCATACCCAAATCCATGGAGAACCTCAGTTACCT  391

seq1  AGTCTGGCTCTTAAATTTTTGATATAACGTAGCCAAAAGCTGTTTTATGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGCTCTTAAATTTTTGATATAACGTAGCCAAAAGCTGTTTTATGA  441

seq1  GTTGCAGTCACTTTTCGTAGAAATTCCAAGACGTTTATTTAAGGATCATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGTCACTTTTCGTAGAAATTCCAAGACGTTTATTTAAGGATCATA  491

seq1  CCTAAGCTGCCCTCCCCCACATATGTGTATAAAGGCACTCCTGACCGAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGCTGCCCTCCCCCACATATGTGTATAAAGGCACTCCTGACCGAGT  541

seq1  TGTTAGAGGAATGGCTCTCAATCTGTGGGCCGCGACCCCCGGGGGAACGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAGGAATGGCTCTCAATCTGTGGGCCGCGACCCCCGGGGGAACGC  591

seq1  TCCGATATTTGCATTATGATTTATAACAGTAGCAAAATTACATTATGAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGATATTTGCATTATGATTTATAACAGTAGCAAAATTACATTATGAAG  641

seq1  TAGCAACAATAATCATAGGGTTGGGATCATCACTGCATGAGGTACTGTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACAATAATCATAGGGTTGGGATCATCACTGCATGAGGTACTGTGC  691

seq1  TAAAGGGTGGGCTTATCAGGAGCGCTGAGAACCCCCTGCTTTAGTCATTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGTGGGCTTATCAGGAGCGCTGAGAACCCCCTGCTTTAGTCATTA  741

seq1  CTGTAAAACAAGGGAACAAAGTGGAGAATGGATTCCTTTTTTTTTTTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAACAAGGGAACAAAGTGGAGAATGGATTCCTTTTTTTTTTTTTT  791

seq1  TTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGC  841

seq1  TATCCTGAAACTCACTTTGCAGACCAGGCTGCCCTTGAACTCAGAAATCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGAAACTCACTTTGCAGACCAGGCTGCCCTTGAACTCAGAAATCC  891

seq1  ACCTGTCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGGGCGCCACCTCCG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGGGCGCCACCTCCG  941

seq1  CCGGGCTGGAGAATGAATTC  969
      ||||||||||||||||||||
seq2  CCGGGCTGGAGAATGAATTC  961