BAC Information

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BAC

Clone NameB6Ng01-154D01
Chromosome4 (Build37)
Map Location 140,873,226 - 140,961,948
singlet/doubletdoublet
Overlap geneEpha2, Gm693, Clcnka, Clcnkb
Upstream geneLOC100040728, Arhgef10l, Rcc2, Padi6, Padi4, Padi3, Padi1, Padi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19
Downstream geneHspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik, Fblim1, BC025833, Slc25a34, Plekhm2, Ddi2, Agmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1, Tmem51, 9030409G11Rik, EG665983
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154D01.bB6Ng01-154D01.g
ACCDH949302DH949303
length1,148457
definitionDH949302|Mus musculus domesticus DNA, BAC clone: B6Ng01-154D01, 5' end.DH949303|Mus musculus domesticus DNA, BAC clone: B6Ng01-154D01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,873,226 - 140,874,369)(140,961,486 - 140,961,948)
sequence
gaattccatccttcctggtctatgtagtgagcaccaagctagccagagat
aaatagttaagactcctgctgagtgtgatagcgcatgcctataatcacaa
cactcatgttctgaaggtggaggcagggagatcgggagttcaaggacatc
cttagctacataatgagttcgaggccattgggaggcacaggaaaaacggg
acatggctcaggtgttacagtgctttctacataggcttggctgaatttgg
atccctaagacccatagagatagggactccccagctgaaacagccaggtc
tgggttcactaacagactgtacctcagaatacaaggtggagacagtggaa
gaagacagcatttgacctccacatgcacgtgctccaacacacatgtgcat
acacacacacacacacacacacacacacacacacacacacacacacacac
acacacagagcgatctgtatgatcaactcactcaactccgggacttcagg
ttacttctggagagtttttaaatgcttttttttttcagaagtagagatgc
tcttgaaaacttatttttaccagagaatggaaagacacctcactcagtat
agtgctccatgcacgagcttggggcctgggtttgactccttagcactgtg
gtaccaggcagacaccagcgtgtggttgcaatttgagcacagggcttgtg
gagacaggcaggtccctgaagctgatcagggagcctgactggatgagaga
actccaggctcagtgagtctctgtctcaagaagataaagtagagtatgac
tgggaagacgcctgatgtcgacttccgtctttatcacgcatgcttgcata
ccaacatgcacttgtgtgtgtgcccatacaaaatgcattcatacatgcaa
atacagaaacacaatatacaatataagggcttttcaaaccttgcctgatc
tccagaaaaaactcggtggcaatcagctagtgacttagttattattattt
aatatgttagtgaatgtccccagaaggacatctgatgggctagctctgct
gtcagggcagcatccataacaggacatccaagaaccccatgcaggatctg
aggcaatggtacctctgtcgctatcctcacccctgcaatggcttctca
agggccagcacatgctaagcaagccctccgctactgagtgatagccatgc
ctagtccctggggttttatttaatggagaaagagaatatcaagctggatc
cttagtgaagaatgggaagaatgcctacgactctcaagatgcccggaaac
tccctccatgcatccaggctattccctgtatccacgctagccccggcaca
cagtaggatctcagattggagtgtacctctgggatcatttttccattgac
ctgactcagattttaaacaactgcaagggaaacagagaagaaggacagcc
cagctgtgacaccgatatgtcaagaggctaatgtccatagcttccacctc
ttaaaatgtggtggggttgggggtagggtgtcttacaatggcggctggcc
cactggctgccttaccgatcagaactcttgtggcatggcattatggaagc
tgaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_140873226_140874369
seq2: B6Ng01-154D01.b_44_1191

seq1  GAATTCCATCCTTCCTGGTCTATGTAGTGAGCACCAAGCTAGCCAGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCTTCCTGGTCTATGTAGTGAGCACCAAGCTAGCCAGAGAT  50

seq1  AAATAGTTAAGACTCCTGCTGAGTGTGATAGCGCATGCCTATAATCACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTTAAGACTCCTGCTGAGTGTGATAGCGCATGCCTATAATCACAA  100

seq1  CACTCATGTTCTGAAGGTGGAGGCAGGGAGATCGGGAGTTCAAGGACATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATGTTCTGAAGGTGGAGGCAGGGAGATCGGGAGTTCAAGGACATC  150

seq1  CTTAGCTACATAATGAGTTCGAGGCCATTGGGAGGCACAGGAAAAACGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCTACATAATGAGTTCGAGGCCATTGGGAGGCACAGGAAAAACGGG  200

seq1  ACATGGCTCAGGTGTTACAGTGCTTTCTACATAGGCTTGGCTGAATTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCTCAGGTGTTACAGTGCTTTCTACATAGGCTTGGCTGAATTTGG  250

seq1  ATCCCTAAGACCCATAGAGATAGGGACTCCCCAGCTGAAACAGCCAGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTAAGACCCATAGAGATAGGGACTCCCCAGCTGAAACAGCCAGGTC  300

seq1  TGGGTTCACTAACAGACTGTACCTCAGAATACAAGGTGGAGACAGTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCACTAACAGACTGTACCTCAGAATACAAGGTGGAGACAGTGGAA  350

seq1  GAAGACAGCATTTGACCTCCACATGCACGTGCTCCAACACACATGTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGCATTTGACCTCCACATGCACGTGCTCCAACACACATGTGCAT  400

seq1  ACACACACACACACACACACACACACACACACACACACACACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACACACACACAC  450

seq1  ACACACAGAGCGATCTGTATGATCAACTCACTCAACTCCGGGACTTCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGAGCGATCTGTATGATCAACTCACTCAACTCCGGGACTTCAGG  500

seq1  TTACTTCTGGAGAGTTTTTAAATGCTTTTTTTTTTCAGAAGTAGAGATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCTGGAGAGTTTTTAAATGCTTTTTTTTTTCAGAAGTAGAGATGC  550

seq1  TCTTGAAAACTTATTTTTACCAGAGAATGGAAAGACACCTCACTCAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAAACTTATTTTTACCAGAGAATGGAAAGACACCTCACTCAGTAT  600

seq1  AGTGCTCCATGCACGAGCTTGGGGCCTGGGTTTGACTCCTTAGCACTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCCATGCACGAGCTTGGGGCCTGGGTTTGACTCCTTAGCACTGTG  650

seq1  GTACCAGGCAGACACCAGCGTGTGGTTGCAATTTGAGCACAGGGCTTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGGCAGACACCAGCGTGTGGTTGCAATTTGAGCACAGGGCTTGTG  700

seq1  GAGACAGGCAGGTCCCTGAAGCTGATCAGGGAGCCTGACTGGATGAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGCAGGTCCCTGAAGCTGATCAGGGAGCCTGACTGGATGAGAGA  750

seq1  ACTCCAGGCTCAGTGAGTCTCTGTCTCAAGAAGATAAAGTAGAGTATGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGGCTCAGTGAGTCTCTGTCTCAAGAAGATAAAGTAGAGTATGAC  800

seq1  TGGGAAGACGCCTGATGTCGACTTCCGTCTTTATCACGCATGCTTGCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGACGCCTGATGTCGACTTCCGTCTTTATCACGCATGCTTGCATA  850

seq1  CCAACATGCACTTGTGTGTGTGCCCATAC-AAATGCATTCATACATGCAA  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCAACATGCACTTGTGTGTGTGCCCATACAAAATGCATTCATACATGCAA  900

seq1  ATACAGAAACACAATATACAATATAA-GGCTTTTCAAACCTTGCCTGATC  948
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATACAGAAACACAATATACAATATAAGGGCTTTTCAAACCTTGCCTGATC  950

seq1  TCCAG-AAAAACTCGGTGGCAATCAGCTAGTGACTTAGTTATTATTATTT  997
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAAAAACTCGGTGGCAATCAGCTAGTGACTTAGTTATTATTATTT  1000

seq1  -ATATGTTAGTGAATGTCCCCAG-AGGACATCTGATGGGCTAGCTTCTGC  1045
       |||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  AATATGTTAGTGAATGTCCCCAGAAGGACATCTGATGGGCTAGC-TCTGC  1049

seq1  TGTCAGGGCAGCATCCATAACAGGACATCCAAGAACCCCATGCAGGATCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGGCAGCATCCATAACAGGACATCCAAGAACCCCATGCAGGATCT  1099

seq1  GAGGGCCATGGTA-CTCTGTCGCTATCCTTCACCCCTGC-ATGGCTTCTC  1143
      || ||| |||||| |||||||||||||| |||||||||| ||||||||||
seq2  GA-GGCAATGGTACCTCTGTCGCTATCC-TCACCCCTGCAATGGCTTCTC  1147

seq1  A  1144
      |
seq2  A  1148

seq1: chr4_140961486_140961948
seq2: B6Ng01-154D01.g_64_526 (reverse)

seq1  CCATTCAGCTTCCATAATGACATGCCAGCTGAGTGCAGCTGGGTAAGGCA  50
      ||||||||||||||||||| |||||||   |||| | | | |||||||||
seq2  CCATTCAGCTTCCATAATGCCATGCCACAAGAGTTCTGATCGGTAAGGCA  50

seq1  GCCAGTGGGCCAGCAGATATTCTAAGACACCCTACCCCCAACCCCACCAC  100
      |||||||||||||| |  ||| ||||||||||||||||||||||||||||
seq2  GCCAGTGGGCCAGCCGCCATTGTAAGACACCCTACCCCCAACCCCACCAC  100

seq1  ATTTTAAGAGGTGGAAGCTATGGACATTAGCCTCTTGACATATCGGTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGAGGTGGAAGCTATGGACATTAGCCTCTTGACATATCGGTGTC  150

seq1  ACAGCTGGGCTGTCCTTCTTCTCTGTTTCCCTTGCAGTTGTTTAAAATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGGGCTGTCCTTCTTCTCTGTTTCCCTTGCAGTTGTTTAAAATCT  200

seq1  GAGTCAGGTCAATGGAAAAATGATCCCAGAGGTACACTCCAATCTGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGGTCAATGGAAAAATGATCCCAGAGGTACACTCCAATCTGAGAT  250

seq1  CCTACTGTGTGCCGGGGCTAGCGTGGATACAGGGAATAGCCTGGATGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGTGTGCCGGGGCTAGCGTGGATACAGGGAATAGCCTGGATGCAT  300

seq1  GGAGGGAGTTTCCGGGCATCTTGAGAGTCGTAGGCATTCTTCCCATTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGTTTCCGGGCATCTTGAGAGTCGTAGGCATTCTTCCCATTCTT  350

seq1  CACTAAGGATCCAGCTTGATATTCTCTTTCTCCATTAAATAAAACCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGGATCCAGCTTGATATTCTCTTTCTCCATTAAATAAAACCCCAG  400

seq1  GGACTAGGCATGGCTATCACTCAGTAGCGGAGGGCTTGCTTAGCATGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAGGCATGGCTATCACTCAGTAGCGGAGGGCTTGCTTAGCATGTGC  450

seq1  TGGCCCTGAATTC  463
      |||||||||||||
seq2  TGGCCCTGAATTC  463