BAC Information

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BAC

Clone NameB6Ng01-154F16
Chromosome4 (Build37)
Map Location 154,657,418 - 154,866,075
singlet/doubletdoublet
Overlap genePrkcz, Gabrd, 2010015L04Rik, Tmem52
Upstream geneArhgef16, Prdm16, LOC100043342, LOC100042178, Actrt2, B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358, Plch2, Pex10, Rer1, Morn1, Ski, 2610002J02Rik
Downstream geneGnb1, Nadk, A530082C11Rik, Cdc2l1, Mmp23, Mib2, B930041F14Rik, Ssu72, EG381582, Atad3a, Vwa1, A230069A22Rik, E230028L10Rik, Mrpl20, Ccnl2, Aurkaip1, Mxra8, Dvl1, Tas1r3, BC002216, Cpsf3l, Pusl1, Centb5, Ube2j2, C1qdc2, B3galt6, Sdf4, LOC100043436, Tnfrsf4, Tnfrsf18, Ttll10, 9430015G10Rik, EG667357, Agrn, LOC100038882, AW011738, LOC677185, 2310042D19Rik, Plekhn1, Klhl17, LOC100042378
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154F16.bB6Ng01-154F16.g
ACCDH949422DH949423
length9861,061
definitionDH949422|Mus musculus domesticus DNA, BAC clone: B6Ng01-154F16, 5' end.DH949423|Mus musculus domesticus DNA, BAC clone: B6Ng01-154F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,865,091 - 154,866,075)(154,657,418 - 154,658,477)
sequence
gaattccgacacgggctttgaacccaagaccacagatcaggtcccgcatc
cgggatccagccttgaacccagaacccatcccagatctggccttgaaccc
aggacctccacccaggttgccgcatctccgggcccgcaccccggacgcgg
ccttgagcctaagaccccggcccgggcctgcgccccggcccaggcggctc
cgccccatccctcaccccccggaccccgagaccccagccctgccgcccac
ccggcacgccggggatcgcccacccaaccctgaagagcaggatgaagacg
gcggccgatgacccacgagcgagaagagccgcagggcctggcccagcgcg
gggcaggctcagctcacagaccccagccgcgctcacctcgccctcgcccg
gtctggcgcccacgccgccgcctggtcgtcgcgctcgcggcctgcgggca
ggagtcggcgaggctggtcgggtccgcgcggcggctgttccagtcccagc
cccgctgccctcgccgcccgcgcccgccaccgccgccgccgccgccgccg
tcgccgtccgcccctcagacgcctccagccatcaggatgggcgcggcggc
ccctgcccgcagcctcgggaaaccccacgtcgcgtcaccgcgcacgggcg
gcgtgcgcgtgccgctctttccgccccgcccctccttccctctgcgcgtg
cgcgagaggcttaaaggacccgtgatttttttcccccaccccaccccacc
accaccccacacaccccgcaagggtcttccagggacgttggcagccctat
cggcctcggtggcctctggctctgacctgacggcgtcggctcctgtgcca
tgtgccccaagccagagggcggtgtgttcttgcctgaatgaccatcccgg
gagggccgaaaggcgtgcgtgcgtgcgtgaacgggcctacaggtctagac
agcgggggtaggagggtaaggaatagccagtgggac
gaattccactcaggctgccagcaagctctagcatcctgcctggggcttcc
tcggtttcctgtcgtgtgtgatctactgggaggcagaacacactgacatt
cattcagtcccggcaggcagaggtctcggcaagaacccagggagagttcc
ggggagaaagtctttataaaccctgtggttattaaggtagcaggacaggc
aaggtaaggcatccaggcatatcctgtgcccaactacaggcaccagattt
tctgctcgtggccgctttgccttgctctgtgcgaggccagagactgtctc
tgactgagagaggagctggcttctcttttcttgggggcagcacataaggc
tgtcattggcagcaccaaccaggagcaaggcttcccacatcgggagtggg
ggtgcgctcacattcctgagtaggtagccatgaaacgtccttgctgtaca
tttctgctaattccacagtaccttccagaactttccagttttgttcccag
aggaaacgcataaagtgtttgcacagtgcaggaacagatggccagaaagc
gtgggctctggcttagaccagactgctgccagaagtctttagggcagacc
caagtgacatcttgggggactcggggccgtgtggcttgtgctcttttctg
atacttatttctagagatgtttcgtggccactgagttacttcccaaatct
gtgagggggatccacggacgacagccagcgagttaggtctgctgagtgaa
agaacactgccaaccctgctcccagccacggtgatccactgacatctcag
ctgccaggatgccagggcaggctgcaacattttacattttactggttcct
ctacaaatcacgaagttcacaagtgcacactttatatttgtacaggaaac
gcgatttttaccttaaggttttcttctcaacatcatggttactaagtggc
aggcattacccagtcactggagattcaaaactacacagcaggtcgggcgt
ggcggctcccgtctttaaatcccagcactccgggaggcagaggcacggcg
gattctgagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_154865091_154866075
seq2: B6Ng01-154F16.b_48_1033 (reverse)

seq1  GTCCCACCTGGCTATTCC-TACCCCTCTACCCCCGCTGTCTAGAACCTGC  49
      |||||| ||||||||||| |||||  ||||||||||||||||| ||||| 
seq2  GTCCCA-CTGGCTATTCCTTACCCTCCTACCCCCGCTGTCTAG-ACCTG-  47

seq1  TAGG-CCGTTCACGCACGCACGCACGCCTTTCGGCCCTCCCGGGCTGGTC  98
      |||| ||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAGGCCCGTTCACGCACGCACGCACGCCTTTCGGCCCTCCCGGGATGGTC  97

seq1  ATTCAGGC-AGGACACACCGCCCTCTGGCTTGGGGCACATGGCACAGGAG  147
      |||||||| || ||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGCAAGAACACACCGCCCTCTGGCTTGGGGCACATGGCACAGGAG  147

seq1  CCGACACCGTCAGGTCAGAGCCAGAGGCCACCGAGGCCGATA-GGCTGCC  196
      ||||| |||||||||||||||||||||||||||||||||||| |||||||
seq2  CCGACGCCGTCAGGTCAGAGCCAGAGGCCACCGAGGCCGATAGGGCTGCC  197

seq1  AACGTCCCTGGAAGACCCTTGCGGGGTGTGTGGGGTGGTGGTGGGGTGGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTCCCTGGAAGACCCTTGCGGGGTGTGTGGGGTGGTGGTGGGGTGGG  247

seq1  GTGGGGGAAAAAAATCACGGGTCCTTTAAGCCTCTCGCGCACGCGCAGAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGAAAAAAATCACGGGTCCTTTAAGCCTCTCGCGCACGCGCAGAG  297

seq1  GGAAGGAGGGGCGGGGCGGAAAGAGCGGCACGCGCACGCCGCCCGTGCGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAGGGGCGGGGCGGAAAGAGCGGCACGCGCACGCCGCCCGTGCGC  347

seq1  GGTGACGCGACGTGGGGTTTCCCGAGGCTGCGGGCAGGGGCCGCCGCGCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACGCGACGTGGGGTTTCCCGAGGCTGCGGGCAGGGGCCGCCGCGCC  397

seq1  CATCCTGATGGCTGGAGGCGTCTGAGGGGCGGACGGCGACGGCGGCGGCG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGATGGCTGGAGGCGTCTGAGGGGCGGACGGCGACGGCGGCGGCG  447

seq1  GCGGCGGCGGTGGCGGGCGCGGGCGGCGAGGGCAGCGGGGCTGGGACTGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCGGCGGTGGCGGGCGCGGGCGGCGAGGGCAGCGGGGCTGGGACTGG  497

seq1  AACAGCCGCCGCGCGGACCCGACCAGCCTCGCCGACTCCTGCCCGCAGGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCGCCGCGCGGACCCGACCAGCCTCGCCGACTCCTGCCCGCAGGC  547

seq1  CGCGAGCGCGACGACCAGGCGGCGGCGTGGGCGCCAGACCGGGCGAGGGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGAGCGCGACGACCAGGCGGCGGCGTGGGCGCCAGACCGGGCGAGGGC  597

seq1  GAGGTGAGCGCGGCTGGGGTCTGTGAGCTGAGCCTGCCCCGCGCTGGGCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGAGCGCGGCTGGGGTCTGTGAGCTGAGCCTGCCCCGCGCTGGGCC  647

seq1  AGGCCCTGCGGCTCTTCTCGCTCGTGGGTCATCGGCCGCCGTCTTCATCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTGCGGCTCTTCTCGCTCGTGGGTCATCGGCCGCCGTCTTCATCC  697

seq1  TGCTCTTCAGGGTTGGGTGGGCGATCCCCGGCGTGCCGGGTGGGCGGCAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCAGGGTTGGGTGGGCGATCCCCGGCGTGCCGGGTGGGCGGCAG  747

seq1  GGCTGGGGTCTCGGGGTCCGGGGGGTGAGGGATGGGGCGGAGCCGCCTGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGGTCTCGGGGTCCGGGGGGTGAGGGATGGGGCGGAGCCGCCTGG  797

seq1  GCCGGGGCGCAGGCCCGGGCCGGGGTCTTAGGCTCAAGGCCGCGTCCGGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGGGCGCAGGCCCGGGCCGGGGTCTTAGGCTCAAGGCCGCGTCCGGG  847

seq1  GTGCGGGCCCGGAGATGCGGCAACCTGGGTGGAGGTCCTGGGTTCAAGGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGGGCCCGGAGATGCGGCAACCTGGGTGGAGGTCCTGGGTTCAAGGC  897

seq1  CAGATCTGGGATGGGTTCTGGGTTCAAGGCTGGATCCCGGATGCGGGACC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTGGGATGGGTTCTGGGTTCAAGGCTGGATCCCGGATGCGGGACC  947

seq1  TGATCTGTGGTCTTGGGTTCAAAGCCCGTGTCGGAATTC  985
      |||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGTGGTCTTGGGTTCAAAGCCCGTGTCGGAATTC  986

seq1: chr4_154657418_154658477
seq2: B6Ng01-154F16.g_69_1129

seq1  GAATTCCACTCAGGCTGCCAGCAAGCTCTAGCATCCTGCCTGGGGCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCAGGCTGCCAGCAAGCTCTAGCATCCTGCCTGGGGCTTCC  50

seq1  TCGGTTTCCTGTCGTGTGTGATCTACTGGGAGGCAGAACACACTGACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTTTCCTGTCGTGTGTGATCTACTGGGAGGCAGAACACACTGACATT  100

seq1  CATTCAGTCCCGGCAGGCAGAGGTCTCGGCAAGAACCCAGGGAGAGTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGTCCCGGCAGGCAGAGGTCTCGGCAAGAACCCAGGGAGAGTTCC  150

seq1  GGGGAGAAAGTCTTTATAAACCCTGTGGTTATTAAGGTAGCAGGACAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAAAGTCTTTATAAACCCTGTGGTTATTAAGGTAGCAGGACAGGC  200

seq1  AAGGTAAGGCATCCAGGCATATCCTGTGCCCAACTACAGGCACCAGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAGGCATCCAGGCATATCCTGTGCCCAACTACAGGCACCAGATTT  250

seq1  TCTGCTCGTGGCCGCTTTGCCTTGCTCTGTGCGAGGCCAGAGACTGTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCGTGGCCGCTTTGCCTTGCTCTGTGCGAGGCCAGAGACTGTCTC  300

seq1  TGACTGAGAGAGGAGCTGGCTTCTCTTTTCTTGGGGGCAGCACATAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAGAGAGGAGCTGGCTTCTCTTTTCTTGGGGGCAGCACATAAGGC  350

seq1  TGTCATTGGCAGCACCAACCAGGAGCAAGGCTTCCCACATCGGGAGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTGGCAGCACCAACCAGGAGCAAGGCTTCCCACATCGGGAGTGGG  400

seq1  GGTGCGCTCACATTCCTGAGTAGGTAGCCATGAAACGTCCTTGCTGTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCGCTCACATTCCTGAGTAGGTAGCCATGAAACGTCCTTGCTGTACA  450

seq1  TTTCTGCTAATTCCACAGTACCTTCCAGAACTTTCCAGTTTTGTTCCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTAATTCCACAGTACCTTCCAGAACTTTCCAGTTTTGTTCCCAG  500

seq1  AGGAAACGCATAAAGTGTTTGCACAGTGCAGGAACAGATGGCCAGAAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACGCATAAAGTGTTTGCACAGTGCAGGAACAGATGGCCAGAAAGC  550

seq1  GTGGGCTCTGGCTTAGACCAGACTGCTGCCAGAAGTCTTTAGGGCAGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTCTGGCTTAGACCAGACTGCTGCCAGAAGTCTTTAGGGCAGACC  600

seq1  CAAGTGACATCTTGGGGGACTCGGGGCCGTGTGGCTTGTGCTCTTTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGACATCTTGGGGGACTCGGGGCCGTGTGGCTTGTGCTCTTTTCTG  650

seq1  ATACTTATTTCTAGAGATGTTTCGTGGCCACTGAGTTACTTCCCAAATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTATTTCTAGAGATGTTTCGTGGCCACTGAGTTACTTCCCAAATCT  700

seq1  GTGAGGGGGATCCACGGACGACAGCCAGCGAGTTAGGTCTGCTGAGTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGGGATCCACGGACGACAGCCAGCGAGTTAGGTCTGCTGAGTGAA  750

seq1  AGAACACTGCCAACCCTGCTCCCAGCCACGGTGATCCACTGACATCTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACTGCCAACCCTGCTCCCAGCCACGGTGATCCACTGACATCTCAG  800

seq1  CTGCCAGGATGCCAGGGCAGGCTGCAACATTTTACATTTTACTGGTTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTGCCAGGATGCCAGGGCAGGCTGCAACATTTTACATTTTACTGGTTCCT  850

seq1  CTACAAATCACGAAGTTCACAAGTGCACACTTTATATTTGTACAGGAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAATCACGAAGTTCACAAGTGCACACTTTATATTTGTACAGGAAAC  900

seq1  GCGATTTTTACCTTAAGGTTTTCTTCTCAACATCATGGTTTACTAAGTGG  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCGATTTTTACCTTAAGGTTTTCTTCTCAACATCATGG-TTACTAAGTGG  949

seq1  CAGGCATTACCCAGTCACTGGAGATTCAAAAACACACAGCAAGTCGGGCG  1000
      |||||||||||||||||||||||||||||||  |||||||| ||||||||
seq2  CAGGCATTACCCAGTCACTGGAGATTCAAAACTACACAGCAGGTCGGGCG  999

seq1  TGGCGGCGCACGCCTTT-AATCCCAGCACT-CGGGAGGCAGAGGCA-GGC  1047
      ||||||| | || |||| |||||||||||| ||||||||||||||| |||
seq2  TGGCGGCTCCCGTCTTTAAATCCCAGCACTCCGGGAGGCAGAGGCACGGC  1049

seq1  GGATTTCTGAGTT  1060
      ||| |||||||||
seq2  GGA-TTCTGAGTT  1061