BAC Information

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BAC

Clone NameB6Ng01-154H09
Chromosome4 (Build37)
Map Location 139,055,963 - 139,192,419
singlet/doubletdoublet
Overlap geneC79267, Aldh4a1
Upstream geneLOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1
Downstream geneTas1r2, Pax7, Gm1667, Klhdc7a, Igsf21, LOC100040728, Arhgef10l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154H09.bB6Ng01-154H09.g
ACCDH949498DH949499
length1,1291,121
definitionDH949498|Mus musculus domesticus DNA, BAC clone: B6Ng01-154H09, 5' end.DH949499|Mus musculus domesticus DNA, BAC clone: B6Ng01-154H09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,055,963 - 139,057,072)(139,191,289 - 139,192,419)
sequence
gaattcttgacatcttgaggcccttcctccaaaacccagagtcaagggaa
gccacgttttagtaaaaaggaagcagagaattgaccctgggcacaggttg
ggcagggatctaggcaggcaagccttcctggcctggaagaacaagtttta
gctcttcttccctccaggaagctgagccctgtgcaccacagcacctttgc
tcatgctgtctgccgcctgaacatccctgcctcgtgttgtctgcgctcct
tcaggccatgtggggctcagagcatgagtcatcctgtccaaggggcctct
ccatactgttctctgtcctgcctaaagtcccatcacactccagagtcacc
acactgcctgtagacagcaatcctgtctctccttccatgccaggggcatg
gctgccccagttaccatccttctagctgggggcacccacccctcttttgt
tcaatattttttatagctaacatttattcgatgtgcgcatgtgcacgctc
aagtgtgccacggcataggtgtggagatcagagaacgactgtgcgagttg
gttctccccttccaccatgcaggtcctagactcaggtcatcagacagcat
tttgtacagacccacctttccagggctagggatgagttctgaggccaagg
tcctgcctctggcttcagggtaggcagaggtcttgagcgcccctggaggt
cctgcctgctgggcatttcctctgcatgccttcctgtgaccccacgctga
gactctgctccccacccttggaatttagggaccaagctgttcccacttca
tggcgtcacctgtggggccaggccgggagctccattcagagctcaatgtg
ggagctgacttcacagctgagcttctttcagctccagtgcagttgctgtg
gcccgcaggaatctggcttccctggggctcccacggggccatgctgatgg
gctcggtcccttgtacacgtgtcggaccttatgaatatcctcacccagct
gcactatcgcctagatgagggattggatggtggacgaattcctggcttgg
gggagccgccctcaccccacaggcaggtcttgtacttggtgtctgctgga
ctgaagggatgggcttgttcgtggctgtc
gaattcaggtgagcatttcctggagcagactaaacctctctccatgactc
cgtcctcagtgcagtgtgctgctcactctacaaaaccatttctcaaaatc
ccatttttcatttgacaacttaaagatgaatatcaagcaagacacctctc
acatgggcagtaaatatacaattaacagcccactgcggcctgagctttaa
ctataactgacaccacacacacagctccagactggggcagaatggccctt
ctgagcctggaattccaggaagccccttagaggacaaaatagagccaggc
cagatggtcagagtcccctctaggcaggggacactgggcagagccagagg
gagtctgagcttccccacagactcctgctaagcccaaactcactccatca
aaggcaaaacagcctcgcaggaaacttaagagtactgaaaaacaagacag
aagaagggtagaggggcccaatggggtgaggacccggcagagaccctggc
agtccctgggtcaggagcaactctgtggttgtttaagagcgcccactgag
ggctgcaggggggcctggctgagctgaaggcagagaggctggcacaagtt
ccgacctgcagtgtgtgagccccatgtgtcccaggctggctgtgcaggct
gcctgacacctctgtggatggcagtgccatgcagtgatgtcagaaggctg
gccactaggagggcctgaaatgacaaaggtgtggcctggagtaggatggc
aggactgaaggggaggtgataggccatggtgggacacatgggctcaccat
tgtcggccgcatctggtaacctatgttacagccttgtttctggggagcat
ctccaagtccccgacagctcctggcacacagaagctgttcagctaatgtc
tggtgtcaggaatggagtctgacagcctgacagagcctgacgggcctgtc
atcctcacctgtccaccatggtcttggcaagacttccgcccttcggggcc
actcagcatatctgcggccttcaggagactgggccggtctgccatgggct
tcagtcccacttcttcctgcagccaggcagcatcgatggctctgtttgag
acaagcctgaggagagagata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_139055963_139057072
seq2: B6Ng01-154H09.b_44_1172

seq1  GAATTCTTGACATCTTGAGGCCCTTCCTCCAAAACCCAGAGTCAAGGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGACATCTTGAGGCCCTTCCTCCAAAACCCAGAGTCAAGGGAA  50

seq1  GCCACGTTTTAGTAAAAAGGAAGCAGAGAATTGACCCTGGGCACAGGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGTTTTAGTAAAAAGGAAGCAGAGAATTGACCCTGGGCACAGGTTG  100

seq1  GGCAGGGATCTAGGCAGGCAAGCCTTCCTGGCCTGGAAGAACAAGTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGATCTAGGCAGGCAAGCCTTCCTGGCCTGGAAGAACAAGTTTTA  150

seq1  GCTCTTCTTCCCTCCAGGAAGCTGAGCCCTGTGCACCACAGCACCTTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCTTCCCTCCAGGAAGCTGAGCCCTGTGCACCACAGCACCTTTGC  200

seq1  TCATGCTGTCTGCCGCCTGAACATCCCTGCCTCGTGTTGTCTGCGCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTGTCTGCCGCCTGAACATCCCTGCCTCGTGTTGTCTGCGCTCCT  250

seq1  TCAGGCCATGTGGGGCTCAGAGCATGAGTCATCCTGTCCAAGGGGCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCATGTGGGGCTCAGAGCATGAGTCATCCTGTCCAAGGGGCCTCT  300

seq1  CCATACTGTTCTCTGTCCTGCCTAAAGTCCCATCACACTCCAGAGTCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTGTTCTCTGTCCTGCCTAAAGTCCCATCACACTCCAGAGTCACC  350

seq1  ACACTGCCTGTAGACAGCAATCCTGTCTCTCCTTCCATGCCAGGGGCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCCTGTAGACAGCAATCCTGTCTCTCCTTCCATGCCAGGGGCATG  400

seq1  GCTGCCCCAGTTACCATCCTTCTAGCTGGGGGCACCCACCCCTCTTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCCAGTTACCATCCTTCTAGCTGGGGGCACCCACCCCTCTTTTGT  450

seq1  TCAATATTTTTTATAGCTAACATTTATTCGATGTGCGCATGTGCACGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATTTTTTATAGCTAACATTTATTCGATGTGCGCATGTGCACGCTC  500

seq1  AAGTGTGCCACGGCATAGGTGTGGAGATCAGAGAACGACTGTGCGAGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGCCACGGCATAGGTGTGGAGATCAGAGAACGACTGTGCGAGTTG  550

seq1  GTTCTCCCCTTCCACCATGCAGGTCCTAGACTCAGGTCATCAGACAGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCCCTTCCACCATGCAGGTCCTAGACTCAGGTCATCAGACAGCAT  600

seq1  TTTGTACAGACCCACCTTTCCAGGGCTAGGGATGAGTTCTGAGGCCAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACAGACCCACCTTTCCAGGGCTAGGGATGAGTTCTGAGGCCAAGG  650

seq1  TCCTGCCTCTGGCTTCAGGGTAGGCAGAGGTCTTGAGCGCCCCTGGAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTCTGGCTTCAGGGTAGGCAGAGGTCTTGAGCGCCCCTGGAGGT  700

seq1  CCTGCCTGCTGGGCATTGCCTCTGCATGCCTTCCTGTGACCCCACGCTGA  750
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCTGCCTGCTGGGCATTTCCTCTGCATGCCTTCCTGTGACCCCACGCTGA  750

seq1  GACTCTGCTCCCCACCCTTGGAATTTAGGGACCAAGCTGTTCCCACTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGCTCCCCACCCTTGGAATTTAGGGACCAAGCTGTTCCCACTTCA  800

seq1  TGGCGTCACCTGTGGGGCCAGGCCGGGAGCTCCATTCAGAGCTCAATGT-  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGGCGTCACCTGTGGGGCCAGGCCGGGAGCTCCATTCAGAGCTCAATGTG  850

seq1  GGAGCTGAC-TCACAGCTGAGCTTCTTCCAGCTCCAGTGCAGTTGCTGTG  898
      ||||||||| ||||||||||||||||| ||||||||||||||||||||||
seq2  GGAGCTGACTTCACAGCTGAGCTTCTTTCAGCTCCAGTGCAGTTGCTGTG  900

seq1  G-CCGCAGGAATCTGGCTTCCCTGGGGCTCCCACGGGGCCATGCTGAT-G  946
      | |||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCCCGCAGGAATCTGGCTTCCCTGGGGCTCCCACGGGGCCATGCTGATGG  950

seq1  GCTCGGTCCC-TGTACACGTG-CGGACCTAATGAATATCCCAACCCAGCC  994
      |||||||||| |||||||||| ||||||| ||||||||||  |||||| |
seq2  GCTCGGTCCCTTGTACACGTGTCGGACCTTATGAATATCCTCACCCAG-C  999

seq1  TGCCACACCGCCTAAGATGAGGCATTGGCAGGTGAACGAATTCCCGGC-T  1043
      |||   | ||||| |||||||| |||||  |||| ||||||||| ||| |
seq2  TGCACTATCGCCT-AGATGAGGGATTGGATGGTGGACGAATTCCTGGCTT  1048

seq1  GGGGGAGCCGCCCTCA-CCCACAGGC-GGTCCTGGCACTGGTGTCTGCT-  1090
      |||||||||||||||| ||||||||| |||| ||    ||||||||||| 
seq2  GGGGGAGCCGCCCTCACCCCACAGGCAGGTCTTGTACTTGGTGTCTGCTG  1098

seq1  GACTG-AGGGAT----------TTGGCTGTC  1110
      ||||| ||||||           ||||||||
seq2  GACTGAAGGGATGGGCTTGTTCGTGGCTGTC  1129

seq1: chr4_139191289_139192419
seq2: B6Ng01-154H09.g_68_1188 (reverse)

seq1  TATCTCTCTCTCCAGGCCTTGCTC-AACAGAGCCATCGATGCTGCCTTGG  49
      ||||||||||  ||||| |  ||| ||||||||||||||||||||| |||
seq2  TATCTCTCTCCTCAGGCTTGTCTCAAACAGAGCCATCGATGCTGCC-TGG  49

seq1  CTGCCAGGAAAGAGTGGGACCTGAAGCCCATGGCAGACCGGGCCCAGGTC  99
      ||| ||||||  ||||||| ||||||||||||||||||| |||||| |||
seq2  CTG-CAGGAAGAAGTGGGA-CTGAAGCCCATGGCAGACC-GGCCCA-GTC  95

seq1  TTCCTGAAGGCGGCAGATATGCTGAGTGGGCCCCGAAGGGCGGAAGTCCT  149
       |||||||||| ||||||||||||||| ||||||||||||||||||| ||
seq2  -TCCTGAAGGCCGCAGATATGCTGAGT-GGCCCCGAAGGGCGGAAGT-CT  142

seq1  TGCCAAGACCATGGTGGGACAGGTGAGGATGGACAGGCCCCGTCAGGCTC  199
      ||||||||||||||| |||||||||||||| |||||| ||||||||||||
seq2  TGCCAAGACCATGGT-GGACAGGTGAGGAT-GACAGG-CCCGTCAGGCTC  189

seq1  TGTCAGGCTGTCAGACTCCATTCCTGACACCAGACATTAGCTGAACAGCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGGCTGTCAGACTCCATTCCTGACACCAGACATTAGCTGAACAGCT  239

seq1  TCTGTGTGCCAGGAGCTGTCGGGGACTTGGAGATGCTCCCCAGAAACAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGCCAGGAGCTGTCGGGGACTTGGAGATGCTCCCCAGAAACAAG  289

seq1  GCTGTAACATAGGTTACCAGATGCGGCCGACAATGGTGAGCCCATGTGTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAACATAGGTTACCAGATGCGGCCGACAATGGTGAGCCCATGTGTC  339

seq1  CCACCATGGCCTATCACCTCCCCTTCAGTCCTGCCATCCTACTCCAGGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGGCCTATCACCTCCCCTTCAGTCCTGCCATCCTACTCCAGGCC  389

seq1  ACACCTTTGTCATTTCAGGCCCTCCTAGTGGCCAGCCTTCTGACATCACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTTGTCATTTCAGGCCCTCCTAGTGGCCAGCCTTCTGACATCACT  439

seq1  GCATGGCACTGCCATCCACAGAGGTGTCAGGCAGCCTGCACAGCCAGCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCACTGCCATCCACAGAGGTGTCAGGCAGCCTGCACAGCCAGCCT  489

seq1  GGGACACATGGGGCTCACACACTGCAGGTCGGAACTTGTGCCAGCCTCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACATGGGGCTCACACACTGCAGGTCGGAACTTGTGCCAGCCTCTC  539

seq1  TGCCTTCAGCTCAGCCAGGCCCCCCTGCAGCCCTCAGTGGGCGCTCTTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCAGCTCAGCCAGGCCCCCCTGCAGCCCTCAGTGGGCGCTCTTAA  589

seq1  ACAACCACAGAGTTGCTCCTGACCCAGGGACTGCCAGGGTCTCTGCCGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCACAGAGTTGCTCCTGACCCAGGGACTGCCAGGGTCTCTGCCGGG  639

seq1  TCCTCACCCCATTGGGCCCCTCTACCCTTCTTCTGTCTTGTTTTTCAGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACCCCATTGGGCCCCTCTACCCTTCTTCTGTCTTGTTTTTCAGTA  689

seq1  CTCTTAAGTTTCCTGCGAGGCTGTTTTGCCTTTGATGGAGTGAGTTTGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAGTTTCCTGCGAGGCTGTTTTGCCTTTGATGGAGTGAGTTTGGG  739

seq1  CTTAGCAGGAGTCTGTGGGGAAGCTCAGACTCCCTCTGGCTCTGCCCAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAGGAGTCTGTGGGGAAGCTCAGACTCCCTCTGGCTCTGCCCAGT  789

seq1  GTCCCCTGCCTAGAGGGGACTCTGACCATCTGGCCTGGCTCTATTTTGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTGCCTAGAGGGGACTCTGACCATCTGGCCTGGCTCTATTTTGTC  839

seq1  CTCTAAGGGGCTTCCTGGAATTCCAGGCTCAGAAGGGCCATTCTGCCCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGGGGCTTCCTGGAATTCCAGGCTCAGAAGGGCCATTCTGCCCCA  889

seq1  GTCTGGAGCTGTGTGTGTGGTGTCAGTTATAGTTAAAGCTCAGGCCGCAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAGCTGTGTGTGTGGTGTCAGTTATAGTTAAAGCTCAGGCCGCAG  939

seq1  TGGGCTGTTAATTGTATATTTACTGCCCATGTGAGAGGTGTCTTGCTTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGTTAATTGTATATTTACTGCCCATGTGAGAGGTGTCTTGCTTGA  989

seq1  TATTCATCTTTAAGTTGTCAAATGAAAAATGGGATTTTGAGAAATGGTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATCTTTAAGTTGTCAAATGAAAAATGGGATTTTGAGAAATGGTTT  1039

seq1  TGTAGAGTGAGCAGCACACTGCACTGAGGACGGAGTCATGGAGAGAGGTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGTGAGCAGCACACTGCACTGAGGACGGAGTCATGGAGAGAGGTT  1089

seq1  TAGTCTGCTCCAGGAAATGCTCACCTGAATTC  1131
      ||||||||||||||||||||||||||||||||
seq2  TAGTCTGCTCCAGGAAATGCTCACCTGAATTC  1121