BAC Information

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BAC

Clone NameB6Ng01-154H16
Chromosome4 (Build37)
Map Location 108,482,861 - 108,647,548
singlet/doubletdoublet
Overlap geneBtf3l4, Txndc12, Kti12, Rab3b
Upstream gene4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik
Downstream geneNrd1, Osbpl9, Calr4, Eps15, LOC666144, 4922503N01Rik, Rnf11, 4930522H14Rik, Cdkn2c, LOC100040307, Faf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154H16.bB6Ng01-154H16.g
ACCDH949511DH949512
length799512
definitionDH949511|Mus musculus domesticus DNA, BAC clone: B6Ng01-154H16, 5' end.DH949512|Mus musculus domesticus DNA, BAC clone: B6Ng01-154H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,646,749 - 108,647,548)(108,482,861 - 108,483,378)
sequence
gaattcaataagattgcttaataggtgcctgtgcctggcacagagtagat
ggttaataaataaatatgcttcataaatattaattataaatccacctaga
ggggcatgggagtacttgttagagtttaggaatgttggtgccaatttgcc
atcctctatagtctgtaacaatatactgtaacaatatcaagtaaagagtc
ttaaggaattattggtaattccagtataatattgaatattgatctaccct
gaaagcaaaccaaccttctcgccattgggtatttacatgatttctgttat
ctttatggtatatcttaaactctgatactggatttattggttcttctttt
cccctggcagcataagaatcattattcttagttactacctgatatagcac
acactaagcttaatatttgttgaatgactaagtgactcatcattcctacg
aaattaggtgtagtagcatgtatttgtaatcctagaactcaggaggtaaa
aacaggaggatcagaagttcaaggtcaactaaagctataggaaatcttgt
tccatagataattgattgatagatagatagatagatagatagatagatag
atagatagacagatattcttaggaaattatgccctgagatttgtgtcaat
ctatcctgataaacttacattagaaaattactctgctgagtgagtggggt
ggtgcacacccttaatctgagcacttcaggaggcagaggtaggcagatct
cttagttcgaggccagcctgtctatagagcaattccagaatatccagga
catgattcttctgactccccaggaactgccgaagtgacccactgtctccg
atgggaagataaatgcccacacacacaccccaagttggtaatttacaaaa
gcacacatccctgggcttttccctgatttcccctcctggccaccagattt
ataactgttactaattagagcaggtaggtaaatatgggctctgctaagaa
ggaaaaaaaaccattccaaagtagccatagaacctggctcccaagtgcca
ggaatatgtgcttgagggcagggtaaatgagagtcaagctaggttgggaa
gagaagaggttacaatattgaggtgctttcctgtgacaggatttggcatc
ttacaagggaccgaagacatgattctgtacaccacttttgttaggatatc
attataagtttcatttagaaataaaaaagagtgatgcctgcatgaatctg
tgctaggtcctttgcatatgttatggttgttgcttggtgtgtgtgtgtgt
gtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_108646749_108647548
seq2: B6Ng01-154H16.b_44_842 (reverse)

seq1  TCCTGGTTGTTCTGGAATTTGCTCTATAGACCAGGCTGGCCTCGAACTCA  50
      |||||| | |||||||| |||||||||||| ||||||||||||||||| |
seq2  TCCTGGATATTCTGGAA-TTGCTCTATAGA-CAGGCTGGCCTCGAACTAA  48

seq1  GAGATCTGCCTACCTCTGCCTCCTG-AGTGCTCAGATTAAGGGTGTGCAC  99
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAGATCTGCCTACCTCTGCCTCCTGAAGTGCTCAGATTAAGGGTGTGCAC  98

seq1  CACCCCACTCACTCAGCAGAGTAATTTTCTAATGTAAGTTTATCAGGATA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCACTCACTCAGCAGAGTAATTTTCTAATGTAAGTTTATCAGGATA  148

seq1  GATTGACACAAATCTCAGGGCATAATTTCCTAAGAATATCTGTCTATCTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGACACAAATCTCAGGGCATAATTTCCTAAGAATATCTGTCTATCTA  198

seq1  TCTATCTATCTATCTATCTATCTATCTATCTATCAATCAATTATCTATGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTATCTATCTATCTATCTATCAATCAATTATCTATGG  248

seq1  AACAAGATTTCCTATAGCTTTAGTTGACCTTGAACTTCTGATCCTCCTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGATTTCCTATAGCTTTAGTTGACCTTGAACTTCTGATCCTCCTGT  298

seq1  TTTTACCTCCTGAGTTCTAGGATTACAAATACATGCTACTACACCTAATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCTCCTGAGTTCTAGGATTACAAATACATGCTACTACACCTAATT  348

seq1  TCGTAGGAATGATGAGTCACTTAGTCATTCAACAAATATTAAGCTTAGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTAGGAATGATGAGTCACTTAGTCATTCAACAAATATTAAGCTTAGTG  398

seq1  TGTGCTATATCAGGTAGTAACTAAGAATAATGATTCTTATGCTGCCAGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTATATCAGGTAGTAACTAAGAATAATGATTCTTATGCTGCCAGGG  448

seq1  GAAAAGAAGAACCAATAAATCCAGTATCAGAGTTTAAGATATACCATAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAGAACCAATAAATCCAGTATCAGAGTTTAAGATATACCATAAA  498

seq1  GATAACAGAAATCATGTAAATACCCAATGGCGAGAAGGTTGGTTTGCTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACAGAAATCATGTAAATACCCAATGGCGAGAAGGTTGGTTTGCTTT  548

seq1  CAGGGTAGATCAATATTCAATATTATACTGGAATTACCAATAATTCCTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTAGATCAATATTCAATATTATACTGGAATTACCAATAATTCCTTA  598

seq1  AGACTCTTTACTTGATATTGTTACAGTATATTGTTACAGACTATAGAGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTTTACTTGATATTGTTACAGTATATTGTTACAGACTATAGAGGA  648

seq1  TGGCAAATTGGCACCAACATTCCTAAACTCTAACAAGTACTCCCATGCCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAATTGGCACCAACATTCCTAAACTCTAACAAGTACTCCCATGCCC  698

seq1  CTCTAGGTGGATTTATAATTAATATTTATGAAGCATATTTATTTATTAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGTGGATTTATAATTAATATTTATGAAGCATATTTATTTATTAAC  748

seq1  CATCTACTCTGTGCCAGGCACAGGCACCTATTAAGCAATCTTATTGAATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACTCTGTGCCAGGCACAGGCACCTATTAAGCAATCTTATTGAATT  798

seq1  C  800
      |
seq2  C  799

seq1: chr4_108482861_108483378
seq2: B6Ng01-154H16.g_68_585

seq1  GAATTCCATGATTCTTCTGACTCCCCAGGAACTGCCGAAGTGACCCACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGATTCTTCTGACTCCCCAGGAACTGCCGAAGTGACCCACTG  50

seq1  TCTCCGATGGGAAGATAAATGCCCACACACACACCCCAAGTTGGTAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGATGGGAAGATAAATGCCCACACACACACCCCAAGTTGGTAATTT  100

seq1  ACAAAAGCACACATCCCTGGGCTTTTCCCTGATTTCCCCTCCTGGCCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGCACACATCCCTGGGCTTTTCCCTGATTTCCCCTCCTGGCCACC  150

seq1  AGATTTATAACTGTTACTAATTAGAGCAGGTAGGTAAATATGGGCTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATAACTGTTACTAATTAGAGCAGGTAGGTAAATATGGGCTCTGC  200

seq1  TAAGAAGGAAAAAAAACCATTCCAAAGTAGCCATAGAACCTGGCTCCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGGAAAAAAAACCATTCCAAAGTAGCCATAGAACCTGGCTCCCAA  250

seq1  GTGCCAGGAATATGTGCTTGAGGGCAGGGTAAATGAGAGTCAAGCTAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGGAATATGTGCTTGAGGGCAGGGTAAATGAGAGTCAAGCTAGGT  300

seq1  TGGGAAGAGAAGAGGTTACAATATTGAGGTGCTTTCCTGTGACAGGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGAGAAGAGGTTACAATATTGAGGTGCTTTCCTGTGACAGGATTT  350

seq1  GGCATCTTACAAGGGACCGAAGACATGATTCTGTACACCACTTTTGTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTTACAAGGGACCGAAGACATGATTCTGTACACCACTTTTGTTAG  400

seq1  GATATCATTATAAGTTTCATTTAGAAATAAAAAAGAGTGATGCCTGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCATTATAAGTTTCATTTAGAAATAAAAAAGAGTGATGCCTGCATG  450

seq1  AATCTGTGCTAGGTCCTTTGCATATGTTATGGTTGTTGCTTGGTGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTGCTAGGTCCTTTGCATATGTTATGGTTGTTGCTTGGTGTGTGT  500

seq1  GTGTGTGTGTGTGTGTGT  518
      ||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGT  518