BAC Information

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BAC

Clone NameB6Ng01-154I09
Chromosome4 (Build37)
Map Location 147,205,699 - 147,340,048
singlet/doubletdoublet
Overlap geneMGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik
Upstream geneLOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692
Downstream geneNppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1, Pex14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154I09.bB6Ng01-154I09.g
ACCDH949545DH949546
length1,048968
definitionDH949545|Mus musculus domesticus DNA, BAC clone: B6Ng01-154I09, 5' end.DH949546|Mus musculus domesticus DNA, BAC clone: B6Ng01-154I09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,338,975 - 147,340,048)(147,205,699 - 147,206,581)
sequence
gaattcttcggcccactacccacgtggaacccagaggagcctgcaagtgc
ttggacaagagtcagagctgcagtcacagtcagacaggaaggaaagaacg
ggcaaagtgctctgtgcaggtgacaggtacgtgcacacattggcattgcc
actctcccatgtcctgcttaagcagacaccactcatggagcccagagtag
gcctctacccaccccatgccccagtgcagggtgcagtcactgtgtttgcc
agccctggtgggtaaagagtacccctggggatgagggtccctggaagatg
ctagggaagagctgagctcagcaaaaactacggacacccacaggagttct
gtaccctactggaagaaggggacccaaaaggtctctgctctccaggagtc
taagtcaggaaagaccagcaggtgtgtggtgatccctgcacccaagagtg
taaagagaagtggcctgtcagctcgggctacagagtgagtccaagcatgg
attattacccccacctcccctccacacacatacacacacagaatagacca
ataatttttgttggtggtgttttttttactaggatgatggtaaaggctgg
ctttcacacctgaccacccaaacccagaagccagtggtagaaaataaaaa
ttaaaaaatctccccaaaacagtaaagttaaaagccccaaggtatgtaac
gaagaaaacaggaagttatctctagaagaggcaggccattagccggctgc
agagatctggcgtctattgattataatgaaaaaggaaatttgaactttaa
aaaaatatatattttactttattttttgtgtataagtgtttttgcctgca
tgtgtgtataggtaccacatgcattcagtggtcatagagagcagagtata
ccagatcttttggaactgcacataactagagttagagacactatgaaaag
aaagaaaggaaggaaagaaaggaaaggaagtaagaatagaaaagaagata
gaaagaaagaaatgataggaaaggtataggaaagagaggaaaggaaag
gaattcaatatcacttcaccaacagacaaggtcctccagataaagactga
acagggaaattctacaactgactgttaaaaaaaaaaaaaaaagtgaaggg
gtttggagagatggctcagcggttaagaacactgactgctcttctgaagg
tcctgagttcaaatcccagcaaccacatggtggctcacaaccacctgaag
cgtttgaagatagctacagtgtacttaatgagtaaatctttaggcctgag
caagcagggactgagcaagtggagttgacctgagcaagtggggcgaccag
agcaaccggagcaagcagaggtcctaaaaattcaattcccaacaaccata
tgaaggctcacaaccagctgtacatgtactcatatacataaaataaataa
atctttttaaaaaaagaagactgaacaaaaaagaataaagacaaattccc
cacatgaaaatagaagcaaaaatactcaataaaatacttgtaaactgaat
caattaacagatcaaaaagatcacctacattgttagagtaggtctcatcc
caaagatgcaaagatggttcaacatacgaaaatgagtaaatataatccac
aatataaaaataaactcacacatacacactcacacaccaagaaaaacaac
aacaaacaccaatcacaatatcatctcattagatttcaaacaggcctttc
acaaaatccagcaccaatacatgataaaagtcttggaaaaattagagcta
taagggacatacctaaacatctgaatacatttacagccaacatcaaatta
aatggagaaaaactcaaaagagttacactaaactcgggaacaagacaaag
ttgtccaatctcactctatctattgaatagagtgcttgaagttctagcta
gagccataagcaactgaagagatcaagggcatatactttggaaaggaaga
cgcaagtatcctaactgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_147338975_147340048
seq2: B6Ng01-154I09.b_47_1094 (reverse)

seq1  CTTTCCTTTTCCTCTCTTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCT  50
                                || |||| |||||| || |||| |
seq2  --------------------------CTTTCCTTTCCTCT-CTTTCCTAT  23

seq1  TCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTT--TTCT  98
       | |||| | || |||||||  || | | ||||||||| |||||  ||| 
seq2  ACCTTTCCTATCATTTCTTTCTTTCTATCTTCTTTTCTATTCTTACTTCC  73

seq1  TTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTTCATAGTTGTCTCTAAC  148
      |||| ||||||| |  ||| |||||||   ||||||||| ||||||||||
seq2  TTTCCTTTCTTTCC--TTCCTTTCTTT--CTTTTCATAG-TGTCTCTAAC  118

seq1  TCTAGTTATGTGCAGTTCC-AGAGATCTGGTATACTCTGCTCTCTATGAC  197
      ||||||||||||||||||| | ||||||||||||||||||||||||||||
seq2  TCTAGTTATGTGCAGTTCCAAAAGATCTGGTATACTCTGCTCTCTATGAC  168

seq1  CACTGAATGCATGTGGTACCTATACACACATGCAGGCAAAAACACTTATA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAATGCATGTGGTACCTATACACACATGCAGGCAAAAACACTTATA  218

seq1  CACAAAAAAT-AAGT-AAATATATATTTTTTTAAAGTTC-AATTTCCTTT  294
      |||||||||| |||| ||||||||||||||||||||||| ||||||||||
seq2  CACAAAAAATAAAGTAAAATATATATTTTTTTAAAGTTCAAATTTCCTTT  268

seq1  TTCATTATAATCAATAGACGCCAGATCTCTGCAGCCGGCTAATGGCCTGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTATAATCAATAGACGCCAGATCTCTGCAGCCGGCTAATGGCCTGC  318

seq1  CTCTTCTAGAGATAACTTCCTGTTTTCTTCGTTACATACCTTGGGGCTTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTAGAGATAACTTCCTGTTTTCTTCGTTACATACCTTGGGGCTTT  368

seq1  TAACTTTACTGTTTTGGGGAGATTTTTTAATTTTTATTTTCTACCACTGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTACTGTTTTGGGGAGATTTTTTAATTTTTATTTTCTACCACTGG  418

seq1  CTTCTGGGTTTGGGTGGTCAGGTGTGAAAGCCAGCCTTTACCATCATCCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGGTTTGGGTGGTCAGGTGTGAAAGCCAGCCTTTACCATCATCCT  468

seq1  AGTAAAAAAAACACCACCAACAAAAATTATTGGTCTATTCTGTGTGTGTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAAAAACACCACCAACAAAAATTATTGGTCTATTCTGTGTGTGTA  518

seq1  TGTGTGTGGAGGGGAGGTGGGGGTAATAATCCATGCTTGGACTCACTCTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGGAGGGGAGGTGGGGGTAATAATCCATGCTTGGACTCACTCTG  568

seq1  TAGCCCGAGCTGACAGGCCACTTCTCTTTACACTCTTGGGTGCAGGGATC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCGAGCTGACAGGCCACTTCTCTTTACACTCTTGGGTGCAGGGATC  618

seq1  ACCACACACCTGCTGGTCTTTCCTGACTTAGACTCCTGGAGAGCAGAGAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACACCTGCTGGTCTTTCCTGACTTAGACTCCTGGAGAGCAGAGAC  668

seq1  CTTTTGGGTCCCCTTCTTCCAGTAGGGTACAGAACTCCTGTGGGTGTCCG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGGTCCCCTTCTTCCAGTAGGGTACAGAACTCCTGTGGGTGTCCG  718

seq1  TAGTTTTTGCTGAGCTCAGCTCTTCCCTAGCATCTTCCAGGGACCCTCAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTGCTGAGCTCAGCTCTTCCCTAGCATCTTCCAGGGACCCTCAT  768

seq1  CCCCAGGGGTACTCTTTACCCACCAGGGCTGGCAAACACAGTGACTGCAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGGGTACTCTTTACCCACCAGGGCTGGCAAACACAGTGACTGCAC  818

seq1  CCTGCACTGGGGCATGGGGTGGGTAGAGGCCTACTCTGGGCTCCATGAGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACTGGGGCATGGGGTGGGTAGAGGCCTACTCTGGGCTCCATGAGT  868

seq1  GGTGTCTGCTTAAGCAGGACATGGGAGAGTGGCAATGCCAATGTGTGCAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTGCTTAAGCAGGACATGGGAGAGTGGCAATGCCAATGTGTGCAC  918

seq1  GTACCTGTCACCTGCACAGAGCACTTTGCCCGTTCTTTCCTTCCTGTCTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGTCACCTGCACAGAGCACTTTGCCCGTTCTTTCCTTCCTGTCTG  968

seq1  ACTGTGACTGCAGCTCTGACTCTTGTCCAAGCACTTGCAGGCTCCTCTGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGACTGCAGCTCTGACTCTTGTCCAAGCACTTGCAGGCTCCTCTGG  1018

seq1  GTTCCACGTGGGTAGTGGGCCGAAGAATTC  1074
      ||||||||||||||||||||||||||||||
seq2  GTTCCACGTGGGTAGTGGGCCGAAGAATTC  1048

seq1: chr4_147205699_147206581
seq2: B6Ng01-154I09.g_67_949

seq1  GAATTCAATATCACTTCACCAACAGACAAGGTCCTCCAGATAAAGACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATCACTTCACCAACAGACAAGGTCCTCCAGATAAAGACTGA  50

seq1  ACAGGGAAATTCTACAACTGACTGTTAAAAAAAAAAAAAAAAGTGAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAAATTCTACAACTGACTGTTAAAAAAAAAAAAAAAAGTGAAGGG  100

seq1  GTTTGGAGAGATGGCTCAGCGGTTAAGAACACTGACTGCTCTTCTGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAGAGATGGCTCAGCGGTTAAGAACACTGACTGCTCTTCTGAAGG  150

seq1  TCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCTGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCTGAAG  200

seq1  CGTTTGAAGATAGCTACAGTGTACTTAATGAGTAAATCTTTAGGCCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTGAAGATAGCTACAGTGTACTTAATGAGTAAATCTTTAGGCCTGAG  250

seq1  CAAGCAGGGACTGAGCAAGTGGAGTTGACCTGAGCAAGTGGGGCGACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGGGACTGAGCAAGTGGAGTTGACCTGAGCAAGTGGGGCGACCAG  300

seq1  AGCAACCGGAGCAAGCAGAGGTCCTAAAAATTCAATTCCCAACAACCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCGGAGCAAGCAGAGGTCCTAAAAATTCAATTCCCAACAACCATA  350

seq1  TGAAGGCTCACAACCAGCTGTACATGTACTCATATACATAAAATAAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCTCACAACCAGCTGTACATGTACTCATATACATAAAATAAATAA  400

seq1  ATCTTTTTAAAAAAAGAAGACTGAACAAAAAAGAATAAAGACAAATTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTAAAAAAAGAAGACTGAACAAAAAAGAATAAAGACAAATTCCC  450

seq1  CACATGAAAATAGAAGCAAAAATACTCAATAAAATACTTGTAAACTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAAAATAGAAGCAAAAATACTCAATAAAATACTTGTAAACTGAAT  500

seq1  CAATTAACAGATCAAAAAGATCACCTACATTGTTAGAGTAGGTCTCATCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAACAGATCAAAAAGATCACCTACATTGTTAGAGTAGGTCTCATCC  550

seq1  CAAAGATGCAAAGATGGTTCAACATACGAAAATGAGTAAATATAATCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATGCAAAGATGGTTCAACATACGAAAATGAGTAAATATAATCCAC  600

seq1  AATATAAAAATAAACTCACACATACACACTCACACACCAAGAAAAACAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAAATAAACTCACACATACACACTCACACACCAAGAAAAACAAC  650

seq1  AACAAACACCAATCACAATATCATCTCATTAGATTTCAAACAGGCCTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACACCAATCACAATATCATCTCATTAGATTTCAAACAGGCCTTTC  700

seq1  ACAAAATCCAGCACCAATACATGATAAAAGTCTTGGAAAAATTAGAGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCCAGCACCAATACATGATAAAAGTCTTGGAAAAATTAGAGCTA  750

seq1  TAAGGGACATACCTAAACATCTGAATACATTTACAGCCAACATCAAATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGACATACCTAAACATCTGAATACATTTACAGCCAACATCAAATTA  800

seq1  AATGGAGAAAAACTCAAAAGAGTTACACTAAACTCGGGAACAAGACAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGAAAAACTCAAAAGAGTTACACTAAACTCGGGAACAAGACAAAG  850

seq1  TTGTCCAATCTCACTCTATCTATTGAATAGAGT  883
      |||||||||||||||||||||||||||||||||
seq2  TTGTCCAATCTCACTCTATCTATTGAATAGAGT  883