BAC Information

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BAC

Clone NameB6Ng01-154J06
Chromosome4 (Build37)
Map Location 117,779,801 - 117,921,944
singlet/doubletdoublet
Overlap geneSt3gal3, Jmjd2a, Ptprf
Upstream genePtch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn
Downstream geneHyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154J06.bB6Ng01-154J06.g
ACCDH949585DH949586
length8271,154
definitionDH949585|Mus musculus domesticus DNA, BAC clone: B6Ng01-154J06, 5' end.DH949586|Mus musculus domesticus DNA, BAC clone: B6Ng01-154J06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,921,114 - 117,921,944)(117,779,801 - 117,780,966)
sequence
gaattccagacctatgggtctgtaggctttgaggacaagaacattgataa
gcatggttattggcaaatagccttaggactcactcgaacagtggtggacg
ctctatggacagcccctgggtggatcttgcttctaagtacaagttcttga
ctcttgcttagagggacctggctcatcagaaagaacttcctgaaagccac
acacaggccctaggctgtggcccaggagagcccctgtcgctggggctaca
cttgttgtcgaggctgccgtgtcccaggccacacgcaccatggaccgtga
ccgacgtcttctcttgtgtcccccccacaggtgcattgcagatagagagc
agcgaggagtctgaccaaggcaagtacgagtgtgtggccaccaactctgc
aggcacacgctactcggcccccgccaacctgtatgtgcgaggtaagaact
tggccacacccagctctgtcagcttggagccaggcgtcacctgccaagca
ttgctgcctagaggagaccttggtgcaaatactggagggactccgaaagt
ctttccttcccatctctctccgcagcagcactaacagccaccacctccat
agctcccaggggccattctactagcagccgccacgacttgccttctttcc
cttcaggcccttggggaagcagacgctccctccaccctctcaccctttgg
gagcatttgtatctcttgtaggtctttgctgcccggtcccagagccctat
ggggagtctggagcctttctgagcagacattgctgttcgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtggtgtgtgt
gaattctggggggcagagaaaccaaccagcttcaacacccaacccaaggc
agtaggtgagaagtaagggtcgggacaccttactaataaagaagacgcga
gccttcgggaactagaaatgcgggcacagtccgaggtttgacgtgaagag
cggcacatgctcgcggggctcggaaaggaagcggagatttgccacagcat
gcagatttcaagggttgggggaagggaagcaccaaaggtctcaggcccca
gcaactagagcggcggttttagtttctatgcctccgtcccgcagggattg
cagctgcatggtaaagctacaggcttggggtgaactacagtgaccatact
tactggagtcttcccattggagtaagtgtagcttccaggcagaataatac
aaaaatcccaggaccaggaagaggcagagggctagcagcagattgcgcac
aaataccaagagtcccatcttcacatgactcacaatttcctacatgacct
aaaaacaaacaggaaagccagtaagatattaagcagtcttcctccgcata
gtgaagaaactctaaagaccgttccaaatgcatgacaaccactgagcccc
ggcagggcacgcagggggcgtttctagacatacatgtcctctccttgttc
ctgtggacggcagatttctggcaattataagctctcaaataagttttata
aaaatgtattttgatttcgtgtgtattgagtgttttgtctgtatgtgtgt
atgcgtgtgcaccatgtgtgtgcttgatgccagcagaggccagaagaggg
catcagatgccctggagctggaggcacagatggttgggagctgccatgtg
gatacagggaaacggaacctggatcctctgcaacatcaccaagtgttctt
aatggtcaagccaactctctagcttttgatttcttaaaaaagaaagattt
tcaagatttacgtgcggttattcatgggtgtactacatgctgcatgcttc
acacatgcagtcggtgccaggagccagaaacaggtatcagatcctctgct
ggcctggagtcacaagcagtcgtgagcagtcagcataggtgctgggactc
aatctgctctcagaaaaagcaatacatgttcgtacactaagcagctctct
agcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_117921114_117921944
seq2: B6Ng01-154J06.b_45_871 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACACACACACACGAAC  50
            |||||||| |||||||||||||||||||||||||||||||||||
seq2  ------ACACACAC-CACACACACACACACACACACACACACACACGAAC  43

seq1  AGCAATGTCTGCTCAG-AAGGCTCCAGACT-CCCATAGGGCTCTGGGACC  98
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  AGCAATGTCTGCTCAGAAAGGCTCCAGACTCCCCATAGGGCTCTGGGACC  93

seq1  GGGCAGCAAAGACCTACAAGAGATACAAATGCTCCC-AAGGGTGAGAGGG  147
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGGCAGCAAAGACCTACAAGAGATACAAATGCTCCCAAAGGGTGAGAGGG  143

seq1  TGGAGGGAGCGTCTGCTTCCCCAAGGGCCTGAAGGGAAAGAAGGCAAGTC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGAGCGTCTGCTTCCCCAAGGGCCTGAAGGGAAAGAAGGCAAGTC  193

seq1  GTGGCGGCTGCTAGTAGAATGGCCCCTGGGAGCTATGGAGGTGGTGGCTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGGCTGCTAGTAGAATGGCCCCTGGGAGCTATGGAGGTGGTGGCTG  243

seq1  TTAGTGCTGCTGCGGAGAGAGATGGGAAGGAAAGACTTTCGGAGTCCCTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGCTGCTGCGGAGAGAGATGGGAAGGAAAGACTTTCGGAGTCCCTC  293

seq1  CAGTATTTGCACCAAGGTCTCCTCTAGGCAGCAATGCTTGGCAGGTGACG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTTGCACCAAGGTCTCCTCTAGGCAGCAATGCTTGGCAGGTGACG  343

seq1  CCTGGCTCCAAGCTGACAGAGCTGGGTGTGGCCAAGTTCTTACCTCGCAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTCCAAGCTGACAGAGCTGGGTGTGGCCAAGTTCTTACCTCGCAC  393

seq1  ATACAGGTTGGCGGGGGCCGAGTAGCGTGTGCCTGCAGAGTTGGTGGCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGTTGGCGGGGGCCGAGTAGCGTGTGCCTGCAGAGTTGGTGGCCA  443

seq1  CACACTCGTACTTGCCTTGGTCAGACTCCTCGCTGCTCTCTATCTGCAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCGTACTTGCCTTGGTCAGACTCCTCGCTGCTCTCTATCTGCAAT  493

seq1  GCACCTGTGGGGGGGACACAAGAGAAGACGTCGGTCACGGTCCATGGTGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGTGGGGGGGACACAAGAGAAGACGTCGGTCACGGTCCATGGTGC  543

seq1  GTGTGGCCTGGGACACGGCAGCCTCGACAACAAGTGTAGCCCCAGCGACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCCTGGGACACGGCAGCCTCGACAACAAGTGTAGCCCCAGCGACA  593

seq1  GGGGCTCTCCTGGGCCACAGCCTAGGGCCTGTGTGTGGCTTTCAGGAAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCTCCTGGGCCACAGCCTAGGGCCTGTGTGTGGCTTTCAGGAAGT  643

seq1  TCTTTCTGATGAGCCAGGTCCCTCTAAGCAAGAGTCAAGAACTTGTACTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGATGAGCCAGGTCCCTCTAAGCAAGAGTCAAGAACTTGTACTT  693

seq1  AGAAGCAAGATCCACCCAGGGGCTGTCCATAGAGCGTCCACCACTGTTCG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAAGATCCACCCAGGGGCTGTCCATAGAGCGTCCACCACTGTTCG  743

seq1  AGTGAGTCCTAAGGCTATTTGCCAATAACCATGCTTATCAATGTTCTTGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTCCTAAGGCTATTTGCCAATAACCATGCTTATCAATGTTCTTGT  793

seq1  CCTCAAAGCCTACAGACCCATAGGTCTGGAATTC  831
      ||||||||||||||||||||||||||||||||||
seq2  CCTCAAAGCCTACAGACCCATAGGTCTGGAATTC  827

seq1: chr4_117779801_117780966
seq2: B6Ng01-154J06.g_66_1219

seq1  GAATTCTGGGGGGCAGAGAAACCAACCAGCTTCAACACCCAACCCAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGGGGCAGAGAAACCAACCAGCTTCAACACCCAACCCAAGGC  50

seq1  AGTAGGTGAGAAGTAAGGGTCGGGACACCTTACTAATAAAGAAGACGCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTGAGAAGTAAGGGTCGGGACACCTTACTAATAAAGAAGACGCGA  100

seq1  GCCTTCGGGAACTAGAAATGCGGGCACAGTCCGAGGTTTGACGTGAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCGGGAACTAGAAATGCGGGCACAGTCCGAGGTTTGACGTGAAGAG  150

seq1  CGGCACATGCTCGCGGGGCTCGGAAAGGAAGCGGAGATTTGCCACAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCACATGCTCGCGGGGCTCGGAAAGGAAGCGGAGATTTGCCACAGCAT  200

seq1  GCAGATTTCAAGGGTTGGGGGAAGGGAAGCACCAAAGGTCTCAGGCCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTTCAAGGGTTGGGGGAAGGGAAGCACCAAAGGTCTCAGGCCCCA  250

seq1  GCAACTAGAGCGGCGGTTTTAGTTTCTATGCCTCCGTCCCGCAGGGATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTAGAGCGGCGGTTTTAGTTTCTATGCCTCCGTCCCGCAGGGATTG  300

seq1  CAGCTGCATGGTAAAGCTACAGGCTTGGGGTGAACTACAGTGACCATACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCATGGTAAAGCTACAGGCTTGGGGTGAACTACAGTGACCATACT  350

seq1  TACTGGAGTCTTCCCATTGGAGTAAGTGTAGCTTCCAGGCAGAATAATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGAGTCTTCCCATTGGAGTAAGTGTAGCTTCCAGGCAGAATAATAC  400

seq1  AAAAATCCCAGGACCAGGAAGAGGCAGAGGGCTAGCAGCAGATTGCGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCCCAGGACCAGGAAGAGGCAGAGGGCTAGCAGCAGATTGCGCAC  450

seq1  AAATACCAAGAGTCCCATCTTCACATGACTCACAATTTCCTACATGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCAAGAGTCCCATCTTCACATGACTCACAATTTCCTACATGACCT  500

seq1  AAAAACAAACAGGAAAGCCAGTAAGATATTAAGCAGTCTTCCTCCGCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAACAGGAAAGCCAGTAAGATATTAAGCAGTCTTCCTCCGCATA  550

seq1  GTGAAGAAACTCTAAAGACCGTTCCAAATGCATGACAACCACTGAGCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAAACTCTAAAGACCGTTCCAAATGCATGACAACCACTGAGCCCC  600

seq1  GGCAGGGCACGCAGGGGGCGTTTCTAGACATACATGTCCTCTCCTTGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGCACGCAGGGGGCGTTTCTAGACATACATGTCCTCTCCTTGTTC  650

seq1  CTGTGGACGGCAGATTTCTGGCAATTATAAGCTCTCAAATAAGTTTTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGACGGCAGATTTCTGGCAATTATAAGCTCTCAAATAAGTTTTATA  700

seq1  AAAATGTATTTTGATTTCGTGTGTATTGAGTGTTTTGTCTGTATGTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTATTTTGATTTCGTGTGTATTGAGTGTTTTGTCTGTATGTGTGT  750

seq1  ATGCGTGTGCACCATGTGTGTGCTTGATGCCAGCAGAGGCCAGAAGAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGTGTGCACCATGTGTGTGCTTGATGCCAGCAGAGGCCAGAAGAGGG  800

seq1  CATCAGATGCCCTGGAGCTGGAGGCACAGATGGTTGGGAGCTGCCATGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGATGCCCTGGAGCTGGAGGCACAGATGGTTGGGAGCTGCCATGTG  850

seq1  GATACAGGG-AACGGAACCTGGATCCTCTGCAACATCACCAAGTGTTCTT  899
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGGGAAACGGAACCTGGATCCTCTGCAACATCACCAAGTGTTCTT  900

seq1  AATGGTCAAGCCAACTCTCTAGCCTTTTGATTTCTTAAAAAAGAAAGATT  949
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AATGGTCAAGCCAACTCTCTAG-CTTTTGATTTCTTAAAAAAGAAAGATT  949

seq1  TTCAAAGATTTACGTGCGGTTATTCATGGGTGTACTACATGCCTGCATGC  999
      ||| ||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTC-AAGATTTACGTGCGGTTATTCATGGGTGTACTACATG-CTGCATGC  997

seq1  TCACCACATGCAGTCGGGTGCCAGGGAAGCCAGAACAGGGTATCAGATCC  1049
      |   ||||||||||| |||||||||  ||||||||   ||||||||||||
seq2  TTCACACATGCAGTC-GGTGCCAGG--AGCCAGAAACAGGTATCAGATCC  1044

seq1  TCTGCTGG-CTGGAGTCACAGGCAGTCGTGAGCAGCCCAGCATAGGTGCT  1098
      |||||||| ||||||||||| ||||||||||||||  |||||||||||||
seq2  TCTGCTGGCCTGGAGTCACAAGCAGTCGTGAGCAG-TCAGCATAGGTGCT  1093

seq1  GGGAACTCAATCTGGCTCCTCCAGAAAAAGCAATACATGTTCGTAACCAC  1148
      ||| ||||||||| ||||   ||||||||||||||||||||||||  |||
seq2  GGG-ACTCAATCT-GCTC--TCAGAAAAAGCAATACATGTTCGTA--CAC  1137

seq1  TAAGCCAGCTCTCTAGCC  1166
      |||| |||||||||||||
seq2  TAAG-CAGCTCTCTAGCC  1154