BAC Information

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BAC

Clone NameB6Ng01-154K18
Chromosome4 (Build37)
Map Location 11,508,470 - 11,509,489
singlet/doubletsinglet
Overlap geneE130016E03Rik
Upstream gene1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847
Downstream geneLOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154K18.bB6Ng01-154K18.g
ACCDH949655DH949656
length1,0181,134
definitionDH949655|Mus musculus domesticus DNA, BAC clone: B6Ng01-154K18, 5' end.DH949656|Mus musculus domesticus DNA, BAC clone: B6Ng01-154K18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaggacatggctgtgcagggggttaattctttcgaccactgcgag
aaattttcactgtgatggcaatgagattctattgggtaatctattggatg
ggtaatctccacagtaaaagcgtttgacactggactacttgttttaaatt
ttgctcttttcaaaaatagcctgaagagaaatgacttttgttttactggt
ataaaactataccttttgggtattaaatttagatttttgtaatttggaaa
tgatacatagatactgtgattttagttgatgacatttaaaatatacagtg
aatacagaagagcacatgagtaggtacctgcttaattctgatcaacatct
ctctctctgcttctctgtttctctctgtgagacacacacacacacacata
ctcacacacatacacacacacacaagcttttgacacaccaacatttctct
ggtagaaatgagctagctgatttgtatatttctagatctgttgttgaaat
agcactctttattaggttttaaaaaggaagaatataaaaaaaatgccact
tatattagtatctacattgatattttttgctagctcattcatttaataaa
tttatttatttatctcagctatgtatttatttagctgagagaatctcaaa
tcctaattatccccagaagttttaaaatctatttgattatatttttatac
aaatattactattaacttgattagacactctactaggaaattttcctgca
cgttatatattttaaaaaaatatctattttaatattttctaactttacaa
cttagaatgatttttaaaaatttatatttattttatttatgtgagtccac
tgtagctgtcttcagacacttcagaagagggcattggatctcattataga
tggttatgaaccatcatggggttgctgggaattgaactcaggaactctgg
aaaagcagtcgatgttctaacactgagcatctctccagccccctttcaaa
aaattttatgtctcaaaa
gaattccaggacagccagaactacacagagaaaccctgtcttggagcaac
agagagagagagagagagagagagagagagagagagagagagagagagag
agagaatacctggtacttgaaacctagctaactaattagtgctagtgaag
ttatggttattagaggagaatttacaaccactaatttactaaaccagcct
aattcctaacaatgatcaataagcctttgtccttatactcacaggcaagt
gtagtcttcacccctcatcaaggacacttctttttgcaacaggcagaaat
gtcaaccaataaaaatgcatcattgtggagcccagtcccaatgtatacgt
ctacaaaatacttccccacttaaggctcagggaacattgctgcagaaggg
gaggaaagactgtaagagcctgtgagattgtgtcttctagtaacatcaga
agttataaccgtaaaatctcaccaacatgactgcccaaatgtgagctgaa
caaggatcacaccagtgagcatgccaaatcgatggaggaaaaccccacaa
ggcctcaaccctacacaaagaccgacaggaaacggaggaaagctgggaac
aagagaggtggtcctcccaggggagagcacactgatagccactcactatt
aaaaaaacaaaatcatccctgaaagcacacatacaagtaacactatatgg
actcaacaggtcatacttaggagaatgtgtatataatgcatacatgcatg
caatggcaaggaatgaaaaattaccataaatctgaaggaaaatggggaag
ggcatatgggagagtttggaagaagggacgggaagaagaatgtgtatttt
atttacatagcaaaaataaacaaacaaataaagggatcagaggaggagca
ggagagatctgatgcatgtcccaacctggatgattcttaaagacattata
tgaaagaaattatggaccagcgggattgtggtgctacccacattatccta
gatttggaggctaagggagaaaggaaggggggtaaggaaagactgactcc
cgtgctagatcctctcaattataaaaagtctaggccatgaatgacgtcat
gtatcacttcagtggagctgctcggagcgcttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_11508470_11509489
seq2: B6Ng01-154K18.b_48_1065

seq1  GAATTCAGGACATGGCTGTGCAGGGGGTTAATTCTTTCGACCACTGCGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACATGGCTGTGCAGGGGGTTAATTCTTTCGACCACTGCGAG  50

seq1  AAATTTTCACTGTGATGGCAATGAGATTCTATTGGGTAATCTATTGGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCACTGTGATGGCAATGAGATTCTATTGGGTAATCTATTGGATG  100

seq1  GGTAATCTCCACAGTAAAAGCGTTTGACACTGGACTACTTGTTTTAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATCTCCACAGTAAAAGCGTTTGACACTGGACTACTTGTTTTAAATT  150

seq1  TTGCTCTTTTCAAAAATAGCCTGAAGAGAAATGACTTTTGTTTTACTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTTTTCAAAAATAGCCTGAAGAGAAATGACTTTTGTTTTACTGGT  200

seq1  ATAAAACTATACCTTTTGGGTATTAAATTTAGATTTTTGTAATTTGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTATACCTTTTGGGTATTAAATTTAGATTTTTGTAATTTGGAAA  250

seq1  TGATACATAGATACTGTGATTTTAGTTGATGACATTTAAAATATACAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACATAGATACTGTGATTTTAGTTGATGACATTTAAAATATACAGTG  300

seq1  AATACAGAAGAGCACATGAGTAGGTACCTGCTTAATTCTGATCAACATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGAAGAGCACATGAGTAGGTACCTGCTTAATTCTGATCAACATCT  350

seq1  CTCTCTCTGCTTCTCTGTTTCTCTCTGTGAGACACACACACACACACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTGCTTCTCTGTTTCTCTCTGTGAGACACACACACACACACATA  400

seq1  CTCACACACATACACACACACACAAGCTTTTGACACACCAACATTTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACACATACACACACACACAAGCTTTTGACACACCAACATTTCTCT  450

seq1  GGTAGAAATGAGCTAGCTGATTTGTATATTTCTAGATCTGTTGTTGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAATGAGCTAGCTGATTTGTATATTTCTAGATCTGTTGTTGAAAT  500

seq1  AGCACTCTTTATTAGGTTTTAAAAAGGAAGAATATAAAAAAAATGCCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCTTTATTAGGTTTTAAAAAGGAAGAATATAAAAAAAATGCCACT  550

seq1  TATATTAGTATCTACATTGATATTTTTTGCTAGCTCATTCATTTAATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAGTATCTACATTGATATTTTTTGCTAGCTCATTCATTTAATAAA  600

seq1  TTTATTTATTTATCTCAGCTATGTATTTATTTAGCTGAGAGAATCTCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTATCTCAGCTATGTATTTATTTAGCTGAGAGAATCTCAAA  650

seq1  TCCTAATTATCCCCAGAAGTTTTAAAATCTATTTGATTATATTTTTATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATTATCCCCAGAAGTTTTAAAATCTATTTGATTATATTTTTATAC  700

seq1  AAATATTACTATTAACTTGATTAGACACTCTACTAGGAAATTTTCCTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTACTATTAACTTGATTAGACACTCTACTAGGAAATTTTCCTGCA  750

seq1  CGTTATATATTTTAAAAAAATATCTATTTTAATATTTTCTAACTTTACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTATATATTTTAAAAAAATATCTATTTTAATATTTTCTAACTTTACAA  800

seq1  CTTAGAATGATTTTTAAAAA-TTATATTTATTTTATTTATGTGAGTCCAC  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTTAGAATGATTTTTAAAAATTTATATTTATTTTATTTATGTGAGTCCAC  850

seq1  TGTAGCTGTCTTCAGACACTTCAGAAGAGGGCATTGGATCCCATTATAGA  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGTAGCTGTCTTCAGACACTTCAGAAGAGGGCATTGGATCTCATTATAGA  900

seq1  TGGTTATGAACCATCATGTGGTTGCTGGGAATTGAACTCAGGAACTCTGG  949
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGGTTATGAACCATCATGGGGTTGCTGGGAATTGAACTCAGGAACTCTGG  950

seq1  AAAAGCAGTCGATGTTCTTAACCACTGAGCCATCTCTCCAGCCCCCTTTC  999
      ||||||||||||||||||  | ||||||| ||||||||||||||||||||
seq2  AAAAGCAGTCGATGTTCT--AACACTGAG-CATCTCTCCAGCCCCCTTTC  997

seq1  AAAAAATTTTATGTCTCAAAA  1020
      |||||||||||||||||||||
seq2  AAAAAATTTTATGTCTCAAAA  1018