BAC Information

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BAC

Clone NameB6Ng01-154K20
Chromosome4 (Build37)11 (Build37)
Map Location 62,406,653 - 62,406,933117,041,796 - 117,042,969
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039247, LOC667278, Mup5, LOC435785, LOC667295, LOC100039305, LOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231, Zfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3
Downstream geneZfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154K20.bB6Ng01-154K20.g
ACCDH949659DH949660
length1011,148
definitionDH949659|Mus musculus domesticus DNA, BAC clone: B6Ng01-154K20, 5' end.DH949660|Mus musculus domesticus DNA, BAC clone: B6Ng01-154K20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(62,406,653 - 62,406,933)(117,041,796 - 117,042,969)
sequence
gaattcatatcctacacacacacacacactcacacacagagagagagaga
gagagagaggaagagagagagagagggggagagggagagggagagggaga
g
gaattctgtcatagtgtgggatattggggctcagaggggcctgggatgaa
gaaggaatggagccagccagactccagatgtggcaagatgaatctcccct
catccgtggaggtcccctgccctgcgctagcctgttcccttgtccttttt
cccatctttcctagtagggcctgccatctggtgctccaccttgctggagc
ccatctcctgtccctcagcccctcctgtggatgcttgacaagcatctgta
gacagagacccatgctccaggccatttgcatgtcccccagctctgtctct
ttgtcctcctcctgaacttgggccccagggctgtgtccccttccaggtgt
ttggtctccttggaagcctgtaatcttaggactgagtcagcagcagctaa
gctgtcctgacacgtgagttctggcctgcacgtgtgctcactctttccag
gtggtctggatgataaacacatcccaagccactcagtccaggccaagaac
agtcactcctccgtgtcctcaccttgagtagccagaatgctcagcctcag
ggaggatgttctcagttcctggtgatgaaacctgaagtctggagttcagc
tctgacactcagtcagctgaggtgggaaagctagcagggctctccatgac
tcaggaaggctggcggctgagttactgcaccactgagacatgtggcctgg
gccctcccttgctgagattacaggcttccacagagacgaagggcttgctt
ccctctgtcacgtgcagatgtagaggtcagagggcagcctgcagggtcag
ttcttaccttatcatgtgagttctgggggtcaaagtcatgccattaaggc
tcagaggcaaatacctttctttacctgctgagccatcttgacaaaatacc
agctgctgtaagaggagtcactgccaacttcacctgtccctgattcactc
agaggggtcatcatcttcaggtcaccaggcagtgtccttggctcattcac
acattcataaggtctcatgatctgcaaagtgtggctagaagagcttatgt
tctcggtgctcgagaccgagagattcaactcctttctgggccggcttcag
tctttccacccctctctctgaggaccttcacaatcagccacaaaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_62406653_62406933
seq2: B6Ng01-154K20.b_78_143 (reverse)

seq1  CTCTCCCCTCTCCCTCTCCCTCTCCCCCTCTCTCTTCCCCACTCTCTCTC  50
      |||| ||||||||||||||||||||||||||||||  | |   |||||||
seq2  CTCT-CCCTCTCCCTCTCCCTCTCCCCCTCTCTCTCTCTCTTCCTCTCTC  49

seq1  TCTCTCTCTCCCCCTGTCTGTCTGTCTGTCTGTCTCTCTCTCTCTTGTCT  100
      |||||||||| | ||||                                 
seq2  TCTCTCTCTCTCTCTGT---------------------------------  66

seq1  GTGTGCCTCTCAGCAGGACCTTTCTTCTCTGCCTTGACTGTAACATGTTG  150
                                                        
seq2  --------------------------------------------------  66

seq1  GTTTTTTAGATGTTTATGTAGAGAGAAAAGCATCCAGTATGCCCATTGTT  200
                                                        
seq2  --------------------------------------------------  66

seq1  TAACAGATGTAAATCAAGCTCCAGTAACTACTAGAGTGTCAGTAGCTGTG  250
                                                        
seq2  --------------------------------------------------  66

seq1  GCGGAAACCCAGGGTGTCTCTCTCTCTCTGT  281
                                     
seq2  -------------------------------  66

seq1: chr11_117041796_117042969
seq2: B6Ng01-154K20.g_67_1214

seq1  GAATTCTGTCATAGTGTGGGATATTGGGGCTCAGAGGGGCCTGGGATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCATAGTGTGGGATATTGGGGCTCAGAGGGGCCTGGGATGAA  50

seq1  GAAGGAATGGAGCCAGCCAGACTCCAGATGTGGCAAGATGAATCTCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAATGGAGCCAGCCAGACTCCAGATGTGGCAAGATGAATCTCCCCT  100

seq1  CATCCGTGGAGGTCCCCTGCCCTGCGCTAGCCTGTTCCCTTGTCCTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCGTGGAGGTCCCCTGCCCTGCGCTAGCCTGTTCCCTTGTCCTTTTT  150

seq1  CCCATCTTTCCTAGTAGGGCCTGCCATCTGGTGCTCCACCTTGCTGGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTTTCCTAGTAGGGCCTGCCATCTGGTGCTCCACCTTGCTGGAGC  200

seq1  CCATCTCCTGTCCCTCAGCCCCTCCTGTGGATGCTTGACAAGCATCTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCCTGTCCCTCAGCCCCTCCTGTGGATGCTTGACAAGCATCTGTA  250

seq1  GACAGAGACCCATGCTCCAGGCCATTTGCATGTCCCCCAGCTCTGTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGACCCATGCTCCAGGCCATTTGCATGTCCCCCAGCTCTGTCTCT  300

seq1  TTGTCCTCCTCCTGAACTTGGGCCCCAGGGCTGTGTCCCCTTCCAGGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTCCTCCTGAACTTGGGCCCCAGGGCTGTGTCCCCTTCCAGGTGT  350

seq1  TTGGTCTCCTTGGAAGCCTGTAATCTTAGGACTGAGTCAGCAGCAGCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTCCTTGGAAGCCTGTAATCTTAGGACTGAGTCAGCAGCAGCTAA  400

seq1  GCTGTCCTGACACGTGAGTTCTGGCCTGCACGTGTGCTCACTCTTTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGACACGTGAGTTCTGGCCTGCACGTGTGCTCACTCTTTCCAG  450

seq1  GTGGTCTGGATGATAAACACATCCCAAGCCACTCAGTCCAGGCCAAGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTGGATGATAAACACATCCCAAGCCACTCAGTCCAGGCCAAGAAC  500

seq1  AGTCACTCCTCCGTGTCCTCACCTTGAGTAGCCAGAATGCTCAGCCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTCCTCCGTGTCCTCACCTTGAGTAGCCAGAATGCTCAGCCTCAG  550

seq1  GGAGGATGTTCTCAGTTCCTGGTGATGAAACCTGAAGTCTGGAGTTCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATGTTCTCAGTTCCTGGTGATGAAACCTGAAGTCTGGAGTTCAGC  600

seq1  TCTGACACTCAGTCAGCTGAGGTGGGAAAGCTAGCAGGGCTCTCCATGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACACTCAGTCAGCTGAGGTGGGAAAGCTAGCAGGGCTCTCCATGAC  650

seq1  TCAGGAAGGCTGGCGGCTGAGTTACTGCACCACTGAGACATGTGGCCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAGGCTGGCGGCTGAGTTACTGCACCACTGAGACATGTGGCCTGG  700

seq1  GCCCTCCCTTGCTGAGATTACAGGCTTCCACAGAGACGAAGGGCTTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCCTTGCTGAGATTACAGGCTTCCACAGAGACGAAGGGCTTGCTT  750

seq1  CCCTCTGTCAGGTGCAGATGTAGAGGTCAGAGGGCAGCCTGCAGGGGTCA  800
      |||||||||| |||||||||||||||||||||||||||||||| ||||||
seq2  CCCTCTGTCACGTGCAGATGTAGAGGTCAGAGGGCAGCCTGCA-GGGTCA  799

seq1  GTTCTTACCTTATCATGTGAGTTCTGGGGGTCAAAGTCATGCCATT-AGG  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTTCTTACCTTATCATGTGAGTTCTGGGGGTCAAAGTCATGCCATTAAGG  849

seq1  CTCAGAGGCAAATACCTTTCTTTACCTGCTGAGCCATCTTGACAAAATAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGGCAAATACCTTTCTTTACCTGCTGAGCCATCTTGACAAAATAC  899

seq1  CAGCTGCTGTAAGAGGAGTCACTGCCAACTTCACCTGTCCCTGATTCCAC  949
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAGCTGCTGTAAGAGGAGTCACTGCCAACTTCACCTGTCCCTGATT-CAC  948

seq1  TCAGAGGGGTCATCCATCTTCAGGTCACCAAGGCAGTGGTCCTTGGCCTC  999
      ||||||||||||| ||||||||||||||| ||||||| |||||||| |||
seq2  TCAGAGGGGTCAT-CATCTTCAGGTCACC-AGGCAGT-GTCCTTGG-CTC  994

seq1  AATTCACACATTCATAAGGTCCCATGAACCTGCAGAGTGTGGCTAAGGAA  1049
       |||||||||||||||||||| |||| | ||||| ||||||||||    |
seq2  -ATTCACACATTCATAAGGTCTCATG-ATCTGCAAAGTGTGGCTA---GA  1039

seq1  AGAGCTTAGTGTTCTCGGTGCTCAGAAGACCAGAGGAAGAATCACACTCC  1099
      |||||||| ||||||||||||||   ||||| |||  ||| ||| |||||
seq2  AGAGCTTA-TGTTCTCGGTGCTC--GAGACC-GAG--AGATTCA-ACTCC  1082

seq1  TTTCCCTGTGTCTGGCTTTCCAGTCCTTTCCACCTCTTCTGCCTGAAGCA  1149
      |||  ||| | | |||||  |||| ||||||||| | |||  |||| |  
seq2  TTT--CTG-GGCCGGCTT--CAGT-CTTTCCACC-CCTCTCTCTGAGGAC  1125

seq1  CTTCCAACAATCAGCCACACAAGAG  1174
      ||||  ||||||||||||| |||||
seq2  CTTC--ACAATCAGCCACAAAAGAG  1148