BAC Information

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BAC

Clone NameB6Ng01-154N15
Chromosome4 (Build37)
Map Location 67,013,459 - 67,014,537
singlet/doubletsinglet
Overlap geneLOC100039379
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneHmgb1-rs18, LOC433715, Tcp1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-154N15.g
ACCDH949785
length1,064
definitionDH949785|Mus musculus domesticus DNA, BAC clone: B6Ng01-154N15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagtgattggggaatgaagacactaaaagaaggtactgttgtatg
cctgggagaaaggccctaaccatgccctcacaggcacatagctggatgct
agggttccacactcgggtccccacacttcttcatcaaacacttacccact
tagctatctcttcataacaaaaagaaaattctgaatgaaagcaagaaagt
agagaaaaagagaacccacaagcaaaggacattatgaattaaaaataaca
actggaattcgtgggtgcctctattttctcattgatgtcagagtcccaga
ctgtagaattctgggaaagaaaagtctgtatgactgttgaagccatatag
gctgtgatcttttgttacaaaagtcccaggaattagtgtagtaatcatta
ctttctattgtaaagccgtttaatcctaaggcacacatgatacctaggtg
ctaccttcttagatttaatcataatctccattaaggcaagacatgtattc
ctcttgtttgtctctggtgttcttttcattgtccaaggctttgagaatga
gtaaagtgtgatgaaagaaattgaactgacttgcctgaggttactatggc
acaaaatgagcagcagaggcggtgggagctttgtgttcctcatattctgt
cctcttgtctgtgcagttgcctaggcacaagaaatggcaagatgctaggg
ctgtgttcatgcgatgaaaaaaatctcagattcactatcgaatttcctat
tccacatcaatatacacaaaagcaataatgactgactgcccaaatcttca
actgcttgcaaaatatgcttaaacttttgcgaaaataaaatatagatatc
ctacagaagacagttctgttgactgacacgtgacaacacgaacaaacgac
tatcgaacaaaaaacacaatcagctatgtttgtgtcatggtgactaatgt
ttgagtgtataacgtgtgtctcatgtgtgacagtgtgatctctgcagtac
aaatgaaggttcagacatcaaatatctttactctttcacactctgcttgg
tcctcatgatacag
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_67013459_67014537
seq2: B6Ng01-154N15.g_65_1128

seq1  GAATTCAGTGATTGTAGAATGAAGACACTAAAAGAAGGTACTGTTCATAT  50
      ||||||||||||||  |||||||||||||||||||||||||||||  |||
seq2  GAATTCAGTGATTGGGGAATGAAGACACTAAAAGAAGGTACTGTT-GTAT  49

seq1  GCCTGGGAGAAAGGCCCTAACCATGCCCTCACAGGCACATAGCTGGATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGAGAAAGGCCCTAACCATGCCCTCACAGGCACATAGCTGGATGC  99

seq1  TAGGGTTCCACACTCGGGTCCCCACACTTCTTCATCAAACACTTACCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTCCACACTCGGGTCCCCACACTTCTTCATCAAACACTTACCCAC  149

seq1  TTAGCTATCTCTTCATAACAAAAAGAAAATTCTGAATGAAAGCAAGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTATCTCTTCATAACAAAAAGAAAATTCTGAATGAAAGCAAGAAAG  199

seq1  TAGAGAAAAAGAGAACCCACAAGCAAAGGACATTATGAATTAGAAATAAC  250
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAGAGAAAAAGAGAACCCACAAGCAAAGGACATTATGAATTAAAAATAAC  249

seq1  AACTGGAATTCGTGGGTGCCTCTATTTTCTCATTGATGTCAGAGTCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAATTCGTGGGTGCCTCTATTTTCTCATTGATGTCAGAGTCCCAG  299

seq1  ACTGTAGAATTCTGGGAAAGAAAAGTCTGTATGACTGTTGAAGCCATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGAATTCTGGGAAAGAAAAGTCTGTATGACTGTTGAAGCCATATA  349

seq1  GGCTGTGATCTTTTGTTACAAAAGTCCCAGGAATTAGTGTAGTAATCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGATCTTTTGTTACAAAAGTCCCAGGAATTAGTGTAGTAATCATT  399

seq1  ACTTTCTATTGTAAAGCCGTTTAATCCTAAGGCACACATGATACCTAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTATTGTAAAGCCGTTTAATCCTAAGGCACACATGATACCTAGGT  449

seq1  GCTACCTTCTTAGATTTAATCATAATCTCCATTAAGGCAAGACATGTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTTCTTAGATTTAATCATAATCTCCATTAAGGCAAGACATGTATT  499

seq1  CCTCTTGTTTGTCTCTGGTGTTCTTTTCATTGTCCAAGGCTTTGAGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGTTTGTCTCTGGTGTTCTTTTCATTGTCCAAGGCTTTGAGAATG  549

seq1  AGTAAAGTGTGATGAAAGAAATTGAACTGACTTGCCTGAGGTTACTATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGTGTGATGAAAGAAATTGAACTGACTTGCCTGAGGTTACTATGG  599

seq1  CACAAAATGAGCAGCAGAGGCAGTAGGAGCTTTGTGTTCCTCATATTCTG  650
      ||||||||||||||||||||| || |||||||||||||||||||||||||
seq2  CACAAAATGAGCAGCAGAGGCGGTGGGAGCTTTGTGTTCCTCATATTCTG  649

seq1  TCCTCTTGTCTGTGCAGTTGCCTTGGCACAAGAAATGGCAAGATGCTAGG  700
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCCTCTTGTCTGTGCAGTTGCCTAGGCACAAGAAATGGCAAGATGCTAGG  699

seq1  GCTGTGTTCATGCAATGAAAAAAATCTCAGATTCACTATCAAATTTCCTA  750
      ||||||||||||| |||||||||||||||||||||||||| |||||||||
seq2  GCTGTGTTCATGCGATGAAAAAAATCTCAGATTCACTATCGAATTTCCTA  749

seq1  TTCCACATCAATATACACAAAAGCAATAAGGACTGACTGCCCAAATCTTC  800
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTCCACATCAATATACACAAAAGCAATAATGACTGACTGCCCAAATCTTC  799

seq1  AACTGCTTGCAAAATATGCTTAAACTTTTTGCGAAGAATAAAATATAGAT  850
      ||||||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  AACTGCTTGCAAAATATGCTTAAAC-TTTTGCGAA-AATAAAATATAGAT  847

seq1  ATCCATTCAGAAGACAGTTCTGTTGACTGACACATGACAAAAACAAACAA  900
      |||| | |||||||||||||||||||||||||| |||| || || |||||
seq2  ATCC-TACAGAAGACAGTTCTGTTGACTGACACGTGAC-AACACGAACAA  895

seq1  ACAAACAAACAAACAAAAAACAAAAACAAGCTATGTTTGTGTTCATGGTG  950
      ||  || | | ||||||||||| || | ||||||||||||| ||||||||
seq2  AC-GACTATCGAACAAAAAACACAATC-AGCTATGTTTGTG-TCATGGTG  942

seq1  ACGAATGTTTGTGTGTAATAAACGTGTGTCTCCATGTGTGGACAGGTGTG  1000
      || |||||||| |||||   ||||||||||| ||||||| |||| |||||
seq2  ACTAATGTTTGAGTGTA--TAACGTGTGTCT-CATGTGT-GACA-GTGTG  987

seq1  ATCTCCTGCAAGTACAAATGAGGGCTCTAGACATCAAATATCTTT-CTCT  1049
      |||| |||| ||||||||||| || || ||||||||||||||||| ||||
seq2  ATCT-CTGC-AGTACAAATGAAGGTTC-AGACATCAAATATCTTTACTCT  1034

seq1  TTCACACTCTGCTGTGTTCTCATGATACAG  1079
      |||||||||||||  || ||||||||||||
seq2  TTCACACTCTGCTTGGTCCTCATGATACAG  1064