BAC Information

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BAC

Clone NameB6Ng01-155F15
Chromosome4 (Build37)
Map Location 139,948,177 - 140,105,886
singlet/doubletdoublet
Overlap geneLOC100040728, Arhgef10l
Upstream geneZubr1, C79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a, Igsf21
Downstream geneRcc2, Padi6, Padi4, Padi3, Padi1, Padi2, Sdhb, Atp13a2, Mfap2, Crocc, Necap2, LOC638991, Spata21, D4Ertd22e, Fbxo42, 6330545A04Rik, Arhgef19, Epha2, Gm693, Clcnka, Clcnkb, Hspb7, Gm694, Zbtb17, Spen, LOC100042951, B330016D10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155F15.bB6Ng01-155F15.g
ACCDH950159DH950160
length1,060850
definitionDH950159|Mus musculus domesticus DNA, BAC clone: B6Ng01-155F15, 5' end.DH950160|Mus musculus domesticus DNA, BAC clone: B6Ng01-155F15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,948,177 - 139,949,212)(140,105,041 - 140,105,886)
sequence
gaattcaaacagatccttgccacgtacagaagaggaggggaatgcaaagg
gcccaccagcccctccttctcgcccacccaccccggctgcagcttcagtc
tgcttttatctgcgttctactgagagtttccgcgtatgactctgtttgaa
caaagcggctctctactacaaacattttacaaacctctgatctagcccag
cccctcatgttatgcagcagggactctcagaccgacagcccagggctaaa
tcctatttttagtgcctcctagtgggatctctcctgtctgagcctcctct
ccaggtctgtgtgacagagagcctggaacagcatgaaggagacacacagt
gcacagtgggctcactgattggctggctggtggcagtgtcctggggactg
ggacagtgcactttgccagggccatcaaaggtctcagagtcttgactctg
tacaaatggagctgtatgggctgctgcccttggatggaggatccacacag
ggagcaaatgtgcctgtgtggatgactgaaggatggatgaacgcgtgaat
gaattcacgggtggatagatatgtgtcatgcatccatcatccatccatcc
atcatccatccatccttccatcaatcatctacacaggcatgcatgcatat
atccatggacacatatatatctgtccattaatccatgaatccagccaatc
agccaaccacccattcatgcatccacccatctattcatccatcatccatg
tacccattcatcatccattcatccatcattccattcatccatcatccatc
catccatcatccatcatccatccatccatccatcatccatccatccatcc
atcatccaatccatccattcatccatctatccatccatcatccatccatc
cattcatccatctatccatccatccatcatccatccatccattcatccat
ctatccatccatccatcattcatccatccattcatccatttatccatcca
ttcgatccatccatccatcatcattcatcatcaatcgatccattcataca
ttcatctatc
gaattctgcttttcctggggttgagagtaatgctgtcttcagagcggaca
gctgtgttcatgctgggctgtgccagacccccgtctcggaggagctggcc
attggaaaagggcgaagactgggagccttcctgctggagttgtttcctgg
cctggaatgccccagtcgtgtgacactggaaagcattgtagttcatagtg
tagcaacacgtctttagtaccaaccagagagacagttgtgccccccttac
tgggtcacagtgaggattaaattgtatggttaaaggtctggagagatggc
ctagtggtaactgcttcccacactaacaagaacttgatccttgcactcat
ataaaagagatcggtgtgtactgctaacctgtagcaatcccagtggtggg
ggaaagagacaggtggggctccaggctcagtgagagaccctgtctcaaaa
aagaaggtggacgttagttgagaaagatacccagtgttgacagtgttgac
tgttgacagtgttgacagtgttgacctctgaccttcagacacttgtgtgc
acacatatgcatgtgcatatgtgtgcacccctgatgcagttgtgtccgat
gcactcaaggttcaaggaagagaggtgaacatcccagcaggtcccctggg
ggttcccacaggctgtggaccgctggagtgtctgagggttcttttttggg
ctcttgactccattccaaagtaggggcagtgggaggtcaggggaggacat
gccacaaaccagcttgtctgaaggccacatgtttgggagggtagagtgtg
tccattgaaatgcataagttttaaaattacatattaatatacttatttac

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_139948177_139949212
seq2: B6Ng01-155F15.b_48_1107

seq1  GAATTCAAACAGATCCTTGCCACGTACAGAAGAGGAGGGGAATGCAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAGATCCTTGCCACGTACAGAAGAGGAGGGGAATGCAAAGG  50

seq1  GCCCACCAGCCCCTCCTTCTCGCCCACCCACCCCGGCTGCAGCTTCAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCAGCCCCTCCTTCTCGCCCACCCACCCCGGCTGCAGCTTCAGTC  100

seq1  TGCTTTTATCTGCGTTCTACTGAGAGTTTCCGCGTATGACTCTGTTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTATCTGCGTTCTACTGAGAGTTTCCGCGTATGACTCTGTTTGAA  150

seq1  CAAAGCGGCTCTCTACTACAAACATTTTACAAACCTCTGATCTAGCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCGGCTCTCTACTACAAACATTTTACAAACCTCTGATCTAGCCCAG  200

seq1  CCCCTCATGTTATGCAGCAGGGACTCTCAGACCGACAGCCCAGGGCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCATGTTATGCAGCAGGGACTCTCAGACCGACAGCCCAGGGCTAAA  250

seq1  TCCTATTTTTAGTGCCTCCTAGTGGGATCTCTCCTGTCTGAGCCTCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTTTTAGTGCCTCCTAGTGGGATCTCTCCTGTCTGAGCCTCCTCT  300

seq1  CCAGGTCTGTGTGACAGAGAGCCTGGAACAGCATGAAGGAGACACACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCTGTGTGACAGAGAGCCTGGAACAGCATGAAGGAGACACACAGT  350

seq1  GCACAGTGGGCTCACTGATTGGCTGGCTGGTGGCAGTGTCCTGGGGACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTGGGCTCACTGATTGGCTGGCTGGTGGCAGTGTCCTGGGGACTG  400

seq1  GGACAGTGCACTTTGCCAGGGCCATCAAAGGTCTCAGAGTCTTGACTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTGCACTTTGCCAGGGCCATCAAAGGTCTCAGAGTCTTGACTCTG  450

seq1  TACAAATGGAGCTGTATGGGCTGCTGCCCTTGGATGGAGGATCCACACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATGGAGCTGTATGGGCTGCTGCCCTTGGATGGAGGATCCACACAG  500

seq1  GGAGCAAATGTGCCTGTGTGGATGACTGAAGGATGGATGAACGCGTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAAATGTGCCTGTGTGGATGACTGAAGGATGGATGAACGCGTGAAT  550

seq1  GAATTCACGGGTGGATAGATATGTGTCATGCATCCATCATCCATCCATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGGGTGGATAGATATGTGTCATGCATCCATCATCCATCCATCC  600

seq1  ATCATCCATCCATCCTTCCATCAATCATCTACACAGGCATGCATGCATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCATCCATCCTTCCATCAATCATCTACACAGGCATGCATGCATAT  650

seq1  ATCCATGGACACATATATATCTGTCCATTAATCCATGAATCCAGCCAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGGACACATATATATCTGTCCATTAATCCATGAATCCAGCCAATC  700

seq1  AGCCAACCACCCATTCATGCATCCACCCATCTATTCATCCATCATCCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACCACCCATTCATGCATCCACCCATCTATTCATCCATCATCCATG  750

seq1  TACCCATTCATCATCCATTCATCCATCA-TCCATTCATCCATCATCCATC  799
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TACCCATTCATCATCCATTCATCCATCATTCCATTCATCCATCATCCATC  800

seq1  CATCCATCATCCATCATCCATCCATCCATCCATCATCCATCCATCCATCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATCATCCATCATCCATCCATCCATCCATCATCCATCCATCCATCC  850

seq1  ATCATCC-ATCCATCCATTCATCCATCTATCCATCCATCATCCATCCATC  898
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCAATCCATCCATTCATCCATCTATCCATCCATCATCCATCCATC  900

seq1  CATTCATCCATCTATCCATCCATCCATCATCCATCCATCCATTCATCCAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATCCATCTATCCATCCATCCATCATCCATCCATCCATTCATCCAT  950

seq1  CTATCCATCCATCCATCATCCATCCATCCATTCATCCATCTATCCATCC-  997
      ||||||||||||||||||| ||||||||||||||||||| ||||||||| 
seq2  CTATCCATCCATCCATCATTCATCCATCCATTCATCCATTTATCCATCCA  1000

seq1  ----ATCCATCCATCC-----------------ATCCATCCATCCATTCA  1026
          ||||||||||||                 ||| |||||| ||| ||
seq2  TTCGATCCATCCATCCATCATCATTCATCATCAATCGATCCATTCATACA  1050

seq1  TCCATCTATC  1036
      | ||||||||
seq2  TTCATCTATC  1060

seq1: chr4_140105041_140105886
seq2: B6Ng01-155F15.g_67_915 (reverse)

seq1  TAAATAAATA-------ATGTAATTTTTAAAACTTAAAGCATTTCAAAAT  43
      ||||||| ||       |||||| ||||||||||| | |||||||  |||
seq2  TAAATAAGTATATTAATATGTAA-TTTTAAAACTT-ATGCATTTC--AAT  46

seq1  GGACACACTCTACCCTCCCAAACCTGTGGCCTTCAGACAAGCCTGGTTTG  93
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  GGACACACTCTACCCTCCCAAACATGTGGCCTTCAGACAAG-CTGGTTTG  95

seq1  TGGCATGTCCTCCCCTGACCTCCCACTGCCCCTACTTTGGAATGGAGTCA  143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGTCCTCCCCTGACCTCCCACTGCCCCTACTTTGGAATGGAGTCA  145

seq1  AGAGCCC-AAAAAGAACCCTCAGACACTCCAGCGGTCCACAGCCTGTGGG  192
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCAAAAAAGAACCCTCAGACACTCCAGCGGTCCACAGCCTGTGGG  195

seq1  AACCCCCAGGGGACCTGCTGGGATGTTCACCTCTCTTCCTTGAACCTTGA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCAGGGGACCTGCTGGGATGTTCACCTCTCTTCCTTGAACCTTGA  245

seq1  GTGCATCGGACACAACTGCATCAGGGGTGCACACATATGCACATGCATAT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATCGGACACAACTGCATCAGGGGTGCACACATATGCACATGCATAT  295

seq1  GTGTGCACACAAGTGTCTGAAGGTCAGAGGTCAACACTGTCAACACTGTC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCACACAAGTGTCTGAAGGTCAGAGGTCAACACTGTCAACACTGTC  345

seq1  AACAGTCAACACTGTCAACACTGGGTATCTTTCTCAACTAACGTCCACCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCAACACTGTCAACACTGGGTATCTTTCTCAACTAACGTCCACCT  395

seq1  TCTTTTTTGAGACAGGGTCTCTCACTGAGCCTGGAGCCCCACCTGTCTCT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTGAGACAGGGTCTCTCACTGAGCCTGGAGCCCCACCTGTCTCT  445

seq1  TTCCCCCACCACTGGGATTGCTACAGGTTAGCAGTACACACCGATCTCTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCACCACTGGGATTGCTACAGGTTAGCAGTACACACCGATCTCTT  495

seq1  TTATATGAGTGCAAGGATCAAGTTCTTGTTAGTGTGGGAAGCAGTTACCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGAGTGCAAGGATCAAGTTCTTGTTAGTGTGGGAAGCAGTTACCA  545

seq1  CTAGGCCATCTCTCCAGACCTTTAACCATACAATTTAATCCTCACTGTGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCCATCTCTCCAGACCTTTAACCATACAATTTAATCCTCACTGTGA  595

seq1  CCCAGTAAGGGGGGCACAACTGTCTCTCTGGTTGGTACTAAAGACGTGTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTAAGGGGGGCACAACTGTCTCTCTGGTTGGTACTAAAGACGTGTT  645

seq1  GCTACACTATGAACTACAATGCTTTCCAGTGTCACACGACTGGGGCATTC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACTATGAACTACAATGCTTTCCAGTGTCACACGACTGGGGCATTC  695

seq1  CAGGCCAGGAAACAACTCCAGCAGGAAGGCTCCCAGTCTTCGCCCTTTTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAGGAAACAACTCCAGCAGGAAGGCTCCCAGTCTTCGCCCTTTTC  745

seq1  CAATGGCCAGCTCCTCCGAGACGGGGGTCTGGCACAGCCCAGCATGAACA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCCAGCTCCTCCGAGACGGGGGTCTGGCACAGCCCAGCATGAACA  795

seq1  CAGCTGTCCGCTCTGAAGACAGCATTACTCTCAACCCCAGGAAAAGCAGA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTCCGCTCTGAAGACAGCATTACTCTCAACCCCAGGAAAAGCAGA  845

seq1  ATTC  846
      ||||
seq2  ATTC  849