BAC Information

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BAC

Clone NameB6Ng01-155H05
Chromosome4 (Build37)
Map Location 124,313,516 - 124,512,450
singlet/doubletdoublet
Overlap genePou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1
Upstream geneMacf1, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc, 1700057H15Rik, LOC100039332
Downstream geneYrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a, LOC100039298, Grik3, Ftl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155H05.bB6Ng01-155H05.g
ACCDH950229DH950230
length1,138615
definitionDH950229|Mus musculus domesticus DNA, BAC clone: B6Ng01-155H05, 5' end.DH950230|Mus musculus domesticus DNA, BAC clone: B6Ng01-155H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,313,516 - 124,314,596)(124,511,836 - 124,512,450)
sequence
gaattctccaggctaatgaggtacctagagacctcgagggcttaggaagg
agcttcccttcccacacatgtctccctgcaaaaggtatttaatttcatac
ccaccccggagagctggggtatggtttgactcatccattttctgctgtgg
caataaactctttggaatcatggactgcctcttttcatcaagatccgccg
tagagagccatgaagaaggcagtagcctaatctcttgtagaaggcctctc
tgcgttcccagccacaacccccgccaagcctgcctcagtcaagccaagga
caatcatcccttctggaacaagctggagtttgttcaccggccccaggcaa
gaccctgtccccagtcccacagccaaccctctgccccctactccattctc
tattcttcctccactccctgtagcacctggatgtgcaagagtctgagaac
cctgtgccctggcctcgtgacaggccctgggaccacctctgccccttgcc
aaccagctctggctaagacagtgctttcccccaccccaccctgggagcag
tgcctgggtgcttccctcgggataacaatcaaacttccctggcggatgca
ggcctacaatggaacatgtgatttcccctctgggcctcagtaccctgttt
gtgtttgatttgagatagacagcccaggctggttcctacctatggcaatc
ctcctgcctcttcctcctgagtgctgggattacaggtgtgagtcaccact
tctagctcctggtctctccttcctggtggtgatggttactcctagtcgga
ggggtcagctagtggaagcgtacatgctccaggaaaggcaggctagtccc
cagccaggcttgaggtgtcacttccccaagcccagccagacaacttcctg
gagttctcacccctcgggtgccagcacaggcatcttcacagctctcagaa
agctccaaactgactgaaactagacaccggaagagtcatgaaattccaca
cagtagatttacagggagatttatcaaaggtgtgatctgagcacccaggc
tctgggatgggctatggcatcgatcaataattctgtccacggtgatcagc
ccagaacccaccactgtgcaaactcccacgcagcagtc
gaattcactctgtagactaggctagctttgaactcagagatttgcctgtc
tctgcctccaagtgctaaaagtaaaagtgtgctccatcacttctggctaa
agtatttgatgtgaaccgcaaatgaaagtaactgaaagcaatctatccag
gcacggttggctgtaacaaccacagggtcctggaggctgaggagagcaga
ctgtcaccactggcctgggctacagagtgagatcctgtcacaaaagaaca
aacttaaagataaggggggaaaggcgggaaggaggaaatctgagggcagc
tcaatgggtgaaggagcttgccacccaagtgcgaagacccgaagacccag
tctgaatatgcagaaggcccagaaaaggctgcagagagcagcatgagcct
atgcaatgtgagctttccacagccagagagataggagacagaatccccag
ctcagggaccagcaagcctaatggaaacacaacagagactgccttgaaat
aacacagaaggtgagcgtcaacatctcaggctgtgctctgacctgcgcat
gcacagtggcaccaatgctctaagagatctcagtggtgaatcacggaatg
agggagggagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_124313516_124314596
seq2: B6Ng01-155H05.b_116_1183

seq1  TCTCCCTGCAAAAGGTATTTAATTTCATACCCACCCCGGAGAGCTGGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTGCAAAAGGTATTTAATTTCATACCCACCCCGGAGAGCTGGGGT  50

seq1  ATGGTTTGACTCATCCATTTTCTGCTGTGGCAATAAACTCTTTGGAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTGACTCATCCATTTTCTGCTGTGGCAATAAACTCTTTGGAATCA  100

seq1  TGGACTGCCTCTTTTCATCAAGATCCGCCGTAGAGAGCCATGAAGAAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGCCTCTTTTCATCAAGATCCGCCGTAGAGAGCCATGAAGAAGGC  150

seq1  AGTAGCCTAATCTCTTGTAGAAGGCCTCTCTGCGTTCCCAGCCACAACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCCTAATCTCTTGTAGAAGGCCTCTCTGCGTTCCCAGCCACAACCC  200

seq1  CCGCCAAGCCTGCCTCAGTCAAGCCAAGGACAATCATCCCTTCTGGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCAAGCCTGCCTCAGTCAAGCCAAGGACAATCATCCCTTCTGGAACA  250

seq1  AGCTGGAGTTTGTTCACCGGCCCCAGGCAAGACCCTGTCCCCAGTCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAGTTTGTTCACCGGCCCCAGGCAAGACCCTGTCCCCAGTCCCAC  300

seq1  AGCCAACCCTCTGCCCCCTACTCCATTCTCTATTCTTCCTCCACTCCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACCCTCTGCCCCCTACTCCATTCTCTATTCTTCCTCCACTCCCTG  350

seq1  TAGCACCTGGATGTGCAAGAGTCTGAGAACCCTGTGCCCTGGCCTCGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACCTGGATGTGCAAGAGTCTGAGAACCCTGTGCCCTGGCCTCGTGA  400

seq1  CAGGCCCTGGGACCACCTCTGCCCCTTGCCAACCAGCTCTGGCTAAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCTGGGACCACCTCTGCCCCTTGCCAACCAGCTCTGGCTAAGACA  450

seq1  GTGCTTTCCCCCACCCCACCCTGGGAGCAGTGCCTGGGTGCTTCCCTCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTCCCCCACCCCACCCTGGGAGCAGTGCCTGGGTGCTTCCCTCGG  500

seq1  GATAACAATCAAACTTCCCTGGCGGATGCAGGCCTACAATGGAACATGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACAATCAAACTTCCCTGGCGGATGCAGGCCTACAATGGAACATGTG  550

seq1  ATTTCCCCTCTGGGCCTCAGTACCCTGTTTGTGTTTGATTTGAGATAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCCTCTGGGCCTCAGTACCCTGTTTGTGTTTGATTTGAGATAGAC  600

seq1  AGCCCAGGCTGGTTCCTACCTATGGCAATCCTCCTGCCTCTTCCTCCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGGCTGGTTCCTACCTATGGCAATCCTCCTGCCTCTTCCTCCTGA  650

seq1  GTGCTGGGATTACAGGTGTGAGTCACCACTTCTAGCTCCTGGTCTCTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGATTACAGGTGTGAGTCACCACTTCTAGCTCCTGGTCTCTCCT  700

seq1  TCCTGGTGGTGATGGTTACTCCTAGTCGGAGGGGTCAGCTAGTGGAAGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTGGTGATGGTTACTCCTAGTCGGAGGGGTCAGCTAGTGGAAGCG  750

seq1  TACATGCTCCAGG-AAGGCAGGCTAGTCCCCAGCCAGGCTTGAGGTGTCA  799
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TACATGCTCCAGGAAAGGCAGGCTAGTCCCCAGCCAGGCTTGAGGTGTCA  800

seq1  CTTCCCCAAGCCCCAGCCAGACAACTTCCTGGAGTTCTCACCCCTCGGGG  849
      |||||||||| ||||||||||||||||||||||||||||||||||| |||
seq2  CTTCCCCAAG-CCCAGCCAGACAACTTCCTGGAGTTCTCACCCCTC-GGG  848

seq1  TGCCAGCACAGGCATCTTCACAGCTCTCAGGAAAGCTCCAAACTGGACTG  899
      ||||||||||||||||||||||||||||| |||||||||||||| |||||
seq2  TGCCAGCACAGGCATCTTCACAGCTCTCA-GAAAGCTCCAAACT-GACTG  896

seq1  AAAACTAGACACCGGAAGAGTCATGAAATTCCACACAGTAAGATTTACAG  949
       |||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  -AAACTAGACACCGGAAGAGTCATGAAATTCCACACAGT-AGATTTACA-  943

seq1  GGGAGATTTATCAAAGGGTGTGATTCTGAGCACCCAGGGCTCTGGGATGG  999
      ||||||||||||||| ||||||| |||||||||||| |||||||||||||
seq2  GGGAGATTTATCAAA-GGTGTGA-TCTGAGCACCCA-GGCTCTGGGATGG  990

seq1  GCTATGGCATCAGATCAATAAATCTGGCCCACGTGTATCCAGCCCAGACA  1049
      ||||||||||| ||||||||| ||| | ||||| ||   |||||||||  
seq2  GCTATGGCATC-GATCAATAATTCT-GTCCACG-GTGATCAGCCCAGAAC  1037

seq1  CCACACACTGTGCCAACCTCCACGCAGCAGTC  1081
      |||| |||||||| |||  |||||||||||||
seq2  CCAC-CACTGTGCAAACTCCCACGCAGCAGTC  1068

seq1: chr4_124511836_124512450
seq2: B6Ng01-155H05.g_69_683 (reverse)

seq1  CCTCCCTCCCTCCCTCATTCCGTGATTCACCACTGAGATCTCTTAGAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCCCTCCCTCATTCCGTGATTCACCACTGAGATCTCTTAGAGCA  50

seq1  TTGGTGCCACTGTGCATGCGCAGGTCAGAGCACAGCCTGAGATGTTGACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCCACTGTGCATGCGCAGGTCAGAGCACAGCCTGAGATGTTGACG  100

seq1  CTCACCTTCTGTGTTATTTCAAGGCAGTCTCTGTTGTGTTTCCATTAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTTCTGTGTTATTTCAAGGCAGTCTCTGTTGTGTTTCCATTAGGC  150

seq1  TTGCTGGTCCCTGAGCTGGGGATTCTGTCTCCTATCTCTCTGGCTGTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGTCCCTGAGCTGGGGATTCTGTCTCCTATCTCTCTGGCTGTGGA  200

seq1  AAGCTCACATTGCATAGGCTCATGCTGCTCTCTGCAGCCTTTTCTGGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCACATTGCATAGGCTCATGCTGCTCTCTGCAGCCTTTTCTGGGCC  250

seq1  TTCTGCATATTCAGACTGGGTCTTCGGGTCTTCGCACTTGGGTGGCAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCATATTCAGACTGGGTCTTCGGGTCTTCGCACTTGGGTGGCAAGC  300

seq1  TCCTTCACCCATTGAGCTGCCCTCAGATTTCCTCCTTCCCGCCTTTCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCACCCATTGAGCTGCCCTCAGATTTCCTCCTTCCCGCCTTTCCCC  350

seq1  CCTTATCTTTAAGTTTGTTCTTTTGTGACAGGATCTCACTCTGTAGCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATCTTTAAGTTTGTTCTTTTGTGACAGGATCTCACTCTGTAGCCCA  400

seq1  GGCCAGTGGTGACAGTCTGCTCTCCTCAGCCTCCAGGACCCTGTGGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTGGTGACAGTCTGCTCTCCTCAGCCTCCAGGACCCTGTGGTTGT  450

seq1  TACAGCCAACCGTGCCTGGATAGATTGCTTTCAGTTACTTTCATTTGCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCAACCGTGCCTGGATAGATTGCTTTCAGTTACTTTCATTTGCGG  500

seq1  TTCACATCAAATACTTTAGCCAGAAGTGATGGAGCACACTTTTACTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATCAAATACTTTAGCCAGAAGTGATGGAGCACACTTTTACTTTTA  550

seq1  GCACTTGGAGGCAGAGACAGGCAAATCTCTGAGTTCAAAGCTAGCCTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGGAGGCAGAGACAGGCAAATCTCTGAGTTCAAAGCTAGCCTAGT  600

seq1  CTACAGAGTGAATTC  615
      |||||||||||||||
seq2  CTACAGAGTGAATTC  615