BAC Information

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BAC

Clone NameB6Ng01-155H14
Chromosome4 (Build37)
Map Location 27,724,113 - 27,873,957
singlet/doubletdoublet
Overlap geneLOC100040691
Upstream genenone
Downstream geneTpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773, Epha7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155H14.bB6Ng01-155H14.g
ACCDH950246DH950247
length1,1121,109
definitionDH950246|Mus musculus domesticus DNA, BAC clone: B6Ng01-155H14, 5' end.DH950247|Mus musculus domesticus DNA, BAC clone: B6Ng01-155H14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,724,113 - 27,725,247)(27,872,836 - 27,873,957)
sequence
gaattctctattctatgaatgaaaataataaacctcaacaacttctaatt
agattcggataattgataatttttgctgaacaaattgccagaagttgtag
aatcataattgtaaaatatggcagttttgtcaatactttgctcagaagaa
atgcgttcctatcaccttataaacaaagtgattaagttcttaaaacacaa
acaatttacaagtacatacaaatttgtaataggtcactagctatgtcaaa
tcaaacgtaatatatgttaaaatttattaacagacctattgttaatttac
atacattcaaaaattacagtaacttttcacctaaattatagcaccagatg
gtttgagttaagtctactggcatccatgtatttataaacctgcctctgtt
tatttttataattttgtaggcataggccttatgggcatattcttttttct
gtatctttgagctaaaactgtggacattatttttacttttaataattttg
tttcttagaagggctgtttattcccatttgcctttttttttgtatttcat
aaaggcacattagacttcatataattctgactcaataaataagcacttaa
tccatttaattaaatgacaacaacaatgaaatttgcagcagattctgtgc
gggagccccagcgtgaaagcatcatggaaatcactcaaactgagacgaaa
caaacgaaaaccaaagagcgtgtctttggccttaacaatttaaaattacc
atgaatggaaagcttgtactctgacattctcaaggggaagaaaagagtat
attgaatgcttaattcaaaagcaaaggcaaagtggatgactttatgttta
accttgacatttaaaggttttaaaatagtgattatttttatgttgataat
tgatttacagtttttctaaagtgtttgcagaatgatgtaataaatgttag
acactgtaattctgtgctatttctttggtagttaccaagctctcccactg
attttgatagacacgagactataagtgatttttctcagatagaaagtcaa
cactttctttttgatagactatcaataaaagttctacttgatgtacaatg
gcatttttctca
gaattcactagagaattctatagccttatactatttacatttctttaaac
gatattcttaatctgtagtgtagtatgcaaactcttggtgttttgagtgc
ttacataagtatgggtacatttatcacttttcatggaatacgcttgcttt
aatacctgacaggccttggatctatcttattaatatattttgtatacctt
ctcagagtgtatataactggtttcattaaaatgttcaatttattaagaca
acctaagtattttaaatatcttaagttcttcccttgatgaaagacataca
gcatatttgaaagccattggcatgcacaggatttgtatgactattcctga
tgcttggtttatcacactacaatcttcagataaataaaatagcagctcat
ttccgttcacaacaaagagcatgctcaaagacaacaatgatgggggaatt
ttgaaactcttgctagattcatatgttaatgaacagctgtgatgtttccc
agacacactactaaaaagaagacaattcccaggttttctgtacaatctaa
aaatttttccaaagattcaaacaaaagctgtaagcaaaactgtcatgact
ttccacaactctatccttgtacctttacaattccgagctgtcactcaact
aaatttagaaaaccccaatgttacaacagtttctttgtttatttaatatg
tttttacctttaggaaaaatgacattgccaaatgtgcaacataattcaga
aggctgtgtttcttcattttgctgaaaagaaggcaaaaataaagatcaat
cagaaaagaaataataacattaaaaataatagcaactgtgttgccactcc
ctgtgtgcagtaaggatgtctgaggatgcatccttagcttctgtaaacag
atacagaaatgactaagggacctcaagggatttcaaacaccgactttcaa
accacattgcctgccattacagacttcagagttagatggagcagacatat
gtacatgaaatgtaaataccacaaaatgaaaaaagatacattcttggaat
tttttttctgtgactagtctctgaaaaataacgccatagaatttgaacct
ccccaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_27724113_27725247
seq2: B6Ng01-155H14.b_49_1160

seq1  GAATTCTCTATTCTATGAATGAAAATAATAAACCTCAACAACTTCTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATTCTATGAATGAAAATAATAAACCTCAACAACTTCTAATT  50

seq1  AGATTCGGATAATTGATAATTTTTGCTGAACAAATTGCCAGAAGTTGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCGGATAATTGATAATTTTTGCTGAACAAATTGCCAGAAGTTGTAG  100

seq1  AATCATAATTGTAAAATATGGCAGTTTTGTCAATACTTTGCTCAGAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAATTGTAAAATATGGCAGTTTTGTCAATACTTTGCTCAGAAGAA  150

seq1  ATGCGTTCCTATCACCTTATAAACAAAGTGATTAAGTTCTTAAAACACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGTTCCTATCACCTTATAAACAAAGTGATTAAGTTCTTAAAACACAA  200

seq1  ACAATTTACAAGTACATACAAATTTGTAATAGGTCACTAGCTATGTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTACAAGTACATACAAATTTGTAATAGGTCACTAGCTATGTCAAA  250

seq1  TCAAACGTAATATATGTTAAAATTTATTAACAGACCTATTGTTAATTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACGTAATATATGTTAAAATTTATTAACAGACCTATTGTTAATTTAC  300

seq1  ATACATTCAAAAATTACAGTAACTTTTCACCTAAATTATAGCACCAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTCAAAAATTACAGTAACTTTTCACCTAAATTATAGCACCAGATG  350

seq1  GTTTGAGTTAAGTCTACTGGCATCCATGTATTTATAAACCTGCCTCTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGTTAAGTCTACTGGCATCCATGTATTTATAAACCTGCCTCTGTT  400

seq1  TATTTTTATAATTTTGTAGGCATAGGCCTTATGGGCATATTCTTTTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTATAATTTTGTAGGCATAGGCCTTATGGGCATATTCTTTTTTCT  450

seq1  GTATCTTTGAGCTAAAACTGTGGACATTATTTTTACTTTTAATAATTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTTGAGCTAAAACTGTGGACATTATTTTTACTTTTAATAATTTTG  500

seq1  TTTCTTAGAAGGGCTGTTTATTCCCATTTGCCTTTTTTTTTGTATTTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGAAGGGCTGTTTATTCCCATTTGCCTTTTTTTTTGTATTTCAT  550

seq1  AAAGGCACATTAGACTTCATATAATTCTGACTCAATAAATAAGCACTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCACATTAGACTTCATATAATTCTGACTCAATAAATAAGCACTTAA  600

seq1  TCCATTTAATTAAATGACAACAACAATGAAATTTGCAGCAGATTCTGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTAATTAAATGACAACAACAATGAAATTTGCAGCAGATTCTGTGC  650

seq1  GGGAGCCCCAGCGTGAAAGCATCATGGAAATCACTCAAACTGAGACGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCCCAGCGTGAAAGCATCATGGAAATCACTCAAACTGAGACGAAA  700

seq1  CAAACGAAAACCAAAGAGCGTGTCTTTGGCCTTAACAATTTAAAATTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACGAAAACCAAAGAGCGTGTCTTTGGCCTTAACAATTTAAAATTACC  750

seq1  ATGAATGGAAAGCTTGTACTCTGACATTCTCAAGGGGAAGAAAAGAGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGGAAAGCTTGTACTCTGACATTCTCAAGGGGAAGAAAAGAGTAT  800

seq1  ATTGAATGCTTAATTCAAAAGCAAAGGCAAAAGTGGATGACTTTATGTTT  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATTGAATGCTTAATTCAAAAGCAAAGGC-AAAGTGGATGACTTTATGTTT  849

seq1  AACCTTGACATTT-AAGGTTTTAAAATAGTGATTATTTTTATGTTGATAA  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AACCTTGACATTTAAAGGTTTTAAAATAGTGATTATTTTTATGTTGATAA  899

seq1  TTGATTTACAGTTTTTCTAAAGTGTTTGCAGAATGATGTAATAAATGTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTACAGTTTTTCTAAAGTGTTTGCAGAATGATGTAATAAATGTTA  949

seq1  GACACTGTAATTCTGTGCTATTTCTTTGGTTAGTTACCAAGCTCTCCCCA  999
      ||||||||||||||||||||||||||||| ||||||||||||||||||  
seq2  GACACTGTAATTCTGTGCTATTTCTTTGG-TAGTTACCAAGCTCTCCC--  996

seq1  ACTGATTTTTGATTAAGAACACGAGGAACTATAAAGTGATTTTTTCTCAG  1049
      ||||| |||||||  || |||||||  ||||| |||||| ||||||||||
seq2  ACTGA-TTTTGAT--AG-ACACGAG--ACTAT-AAGTGA-TTTTTCTCAG  1038

seq1  ATAGAAAGTTCAACACTTTCTTTTTTGATTAAGACTATCAAATAAAAAGT  1099
      |||||||| ||||||||||| ||||||||  |||||||| |||||||   
seq2  ATAGAAAG-TCAACACTTTC-TTTTTGAT--AGACTATC-AATAAAA--G  1081

seq1  TTCTACTATGATGTTAACCAAATGGGCATTTTCTCA  1135
      ||||||| ||||||  ||  |||||   ||||||||
seq2  TTCTACT-TGATGT--AC--AATGGCATTTTTCTCA  1112

seq1: chr4_27872836_27873957
seq2: B6Ng01-155H14.g_64_1172 (reverse)

seq1  AATTGGGGGAGATTTCAAATCTATGGCGTTA-TTTTCAGGAAGACTTAGT  49
      |||| |||||| ||  || |||||||||||| |||||||  |||| ||||
seq2  AATTTGGGGAGGTTCAAATTCTATGGCGTTATTTTTCAG--AGAC-TAGT  47

seq1  CACAGAAAAAAAATTTCCAAGAATGTATCTATTTTCAATTTTTGTGGTTA  99
      ||||||||||||| |||||||||||||||| ||||||  |||||||||  
seq2  CACAGAAAAAAAA-TTCCAAGAATGTATCTTTTTTCA--TTTTGTGGT--  92

seq1  TTTTACATTTCATGTACATATGTCCTGCCTCCCATCTAACTCTTGAAGTC  149
       |||||||||||||||||||||| ||||   ||||||||||| |||||||
seq2  ATTTACATTTCATGTACATATGT-CTGC--TCCATCTAACTC-TGAAGTC  138

seq1  TGTAATGGCAGGCAATGTGGTTTTGAAAGTCGGTGTTTGAAATCCCTTTG  199
      |||||||||||||||||||| ||||||||||||||||||||||||| |||
seq2  TGTAATGGCAGGCAATGTGG-TTTGAAAGTCGGTGTTTGAAATCCC-TTG  186

seq1  AGGTCCCTTAGTCATTTCTGTATCTGTTTACAGAAGCTAAGGATGCATCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCTTAGTCATTTCTGTATCTGTTTACAGAAGCTAAGGATGCATCC  236

seq1  TCAGACATCCTTACTGCACACAGGGAGTGGCAACACAGTTGCTATTATTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACATCCTTACTGCACACAGGGAGTGGCAACACAGTTGCTATTATTT  286

seq1  TTAATGTTATTATTTCTTTTCTGATTGATCTTTATTTTTGCCTTCTTTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTTATTATTTCTTTTCTGATTGATCTTTATTTTTGCCTTCTTTTC  336

seq1  AGCAAAATGAAGAAACACAGCCTTCTGAATTATGTTGCACATTTGGCAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATGAAGAAACACAGCCTTCTGAATTATGTTGCACATTTGGCAAT  386

seq1  GTCATTTTTCCTAAAGGTAAAAACATATTAAATAAACAAAGAAACTGTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTTCCTAAAGGTAAAAACATATTAAATAAACAAAGAAACTGTTG  436

seq1  TAACATTGGGGTTTTCTAAATTTAGTTGAGTGACAGCTCGGAATTGTAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTGGGGTTTTCTAAATTTAGTTGAGTGACAGCTCGGAATTGTAAA  486

seq1  GGTACAAGGATAGAGTTGTGGAAAGTCATGACAGTTTTGCTTACAGCTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAAGGATAGAGTTGTGGAAAGTCATGACAGTTTTGCTTACAGCTTT  536

seq1  TGTTTGAATCTTTGGAAAAATTTTTAGATTGTACAGAAAACCTGGGAATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAATCTTTGGAAAAATTTTTAGATTGTACAGAAAACCTGGGAATT  586

seq1  GTCTTCTTTTTAGTAGTGTGTCTGGGAAACATCACAGCTGTTCATTAACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTTTTTAGTAGTGTGTCTGGGAAACATCACAGCTGTTCATTAACA  636

seq1  TATGAATCTAGCAAGAGTTTCAAAATTCCCCCATCATTGTTGTCTTTGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATCTAGCAAGAGTTTCAAAATTCCCCCATCATTGTTGTCTTTGAG  686

seq1  CATGCTCTTTGTTGTGAACGGAAATGAGCTGCTATTTTATTTATCTGAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCTTTGTTGTGAACGGAAATGAGCTGCTATTTTATTTATCTGAAG  736

seq1  ATTGTAGTGTGATAAACCAAGCATCAGGAATAGTCATACAAATCCTGTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAGTGTGATAAACCAAGCATCAGGAATAGTCATACAAATCCTGTGC  786

seq1  ATGCCAATGGCTTTCAAATATGCTGTATGTCTTTCATCAAGGGAAGAACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAATGGCTTTCAAATATGCTGTATGTCTTTCATCAAGGGAAGAACT  836

seq1  TAAGATATTTAAAATACTTAGGTTGTCTTAATAAATTGAACATTTTAATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATATTTAAAATACTTAGGTTGTCTTAATAAATTGAACATTTTAATG  886

seq1  AAACCAGTTATATACACTCTGAGAAGGTATACAAAATATATTAATAAGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGTTATATACACTCTGAGAAGGTATACAAAATATATTAATAAGAT  936

seq1  AGATCCAAGGCCTGTCAGGTATTAAAGCAAGCGTATTCCATGAAAAGTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAAGGCCTGTCAGGTATTAAAGCAAGCGTATTCCATGAAAAGTGA  986

seq1  TAAATGTACCCATACTTATGTAAGCACTCAAAACACCAAGAGTTTGCATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTACCCATACTTATGTAAGCACTCAAAACACCAAGAGTTTGCATA  1036

seq1  CTACACTACAGATTAAGAATATCGTTTAAAGAAATGTAAATAGTATAAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTACAGATTAAGAATATCGTTTAAAGAAATGTAAATAGTATAAGG  1086

seq1  CTATAGAATTCTCTAGTGAATTC  1122
      |||||||||||||||||||||||
seq2  CTATAGAATTCTCTAGTGAATTC  1109