BAC Information

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BAC

Clone NameB6Ng01-155P04
Chromosome4 (Build37)
Map Location 90,715,155 - 90,825,166
singlet/doubletdoublet
Overlap geneLOC664848
Upstream geneZfp352, LOC619842, LOC435792, Ppia-ps4_804.1, LOC664840
Downstream geneLOC100042274, Elavl2, LOC664864, LOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-155P04.bB6Ng01-155P04.g
ACCDH950584DH950585
length5711,190
definitionDH950584|Mus musculus domesticus DNA, BAC clone: B6Ng01-155P04, 5' end.DH950585|Mus musculus domesticus DNA, BAC clone: B6Ng01-155P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,824,591 - 90,825,166)(90,715,155 - 90,716,340)
sequence
ttaatgcatagttgtacacacaggagctactgagtgactttcaggttctc
agcactttggtcatttaagtggtgtgtaattgtacatgttttggggttga
tgtatgtgtaagcatgtttatgtgcagatgttccggcagacatacatctg
tattaggtgtcttcctcaatcattcgatatgaggcaggttatctcattga
acctggatgtcactgattttgctaagtttgttgaccagatggctcttttc
cacttccccagcatgggtatacgctgcctcacccagctttttttggtgtg
atgtccatgctcactttctcttgcctagacaccaagcacttagctacctg
aatgagccctttccctagcctgccccttttcgttctctctctctctctct
ctctctctctctctctctctctctctctctctctctcccccacctctctc
tctctctcattattagtgtgtgtaggggagtgtggggaattgttcatcct
ctcttccactctgggctttcagagaactgaaataaagccttcgggcttgc
taggcaagcatttttacccac
gaattctttgttcagctctgagccccattttttaaaagggctatttgatt
ttctggagtccaccctcttgagttctttatatatattggatattagaaat
ctatctgatttaagataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgaggagttggatttataattgtttgtgtttcgatgaga
catttatgtcatttttcttctttacatcttctatgtacaattttgacttt
tgaatgctgagacaatcttattcatttgtaagaaaatcccttcttcatca
caatgtcctatccaatcatatatttctaggattaatttctaaagttggtc
aagatttccacaccattccagtatctgaatgataggaagctgtagaatct
aatttacattagcttcataaaactgagaagcattttcaactcctattctg
aaaaatcttgtataaaatagaagtatttcatcattaaacagaaagtaaat
ttcccagttaaataactttggtatacaacttaatcatggaaaaatttcaa
gttaaagttttcattactttatcatttaacagtggtactcagaattattt
tttagatttcttggcaagacattatccacaatacttttcttatgaatttt
taatgtccaagcatatctagtgatagccccttttacatttattgtatttg
tcatttgtatattctataatttcctttaacatctttacctgtatagttag
aaaaagattctcaatgggggtaccatgaaagaattaatactcagtgttga
aagttgtctatcatgtaaaatgaaatacatttcttatgaatctgaagtaa
cattgtgttacctaagtactccctatgtatgtagagaaaatagactaaat
gccataataattgaaaagagaaaattcctcaattttaatggtcatttcaa
atcaccagttatttgcttttatgggtttctttccttacacttacttattt
gttacaatcttgtaatactattttgtgtttcatcagctctttacctcttg
tatcatcctgtttgctctacttgcctgaagtatgatacacccagctttct
ctttctctttctaaaatgcaagtaatatgtgagttttaacccaatactct
tcttaaaaaactaatttctaaatataaattcaatctaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_90824591_90825166
seq2: B6Ng01-155P04.b_45_621 (reverse)

seq1  GTGGGTAAAAATGCTTGCCGAGCAAGCCCGAAGGCCTGAATTCAGTTCTC  50
      ||||||||||||||||||| ||||||||||||||| | | ||||||||||
seq2  GTGGGTAAAAATGCTTGCCTAGCAAGCCCGAAGGCTTTATTTCAGTTCTC  50

seq1  TG-AAGCCCATGGTAGAAGGAGA-GATGAACAATTCCCCACACTCCCCTA  98
      || |||||||  || ||| |||| ||||||||||||||||||||||||||
seq2  TGAAAGCCCAGAGTGGAA-GAGAGGATGAACAATTCCCCACACTCCCCTA  99

seq1  CACACACTAATAATGAGAGAGAGAGAGAGGGGGGGGAGAGAGAGAGAGAG  148
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CACACACTAATAATGAGAGAGAGAGAGAGGTGGGGGAGAGAGAGAGAGAG  149

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACGAAAAGGGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACGAAAAGGGG  199

seq1  CAGGCTAGGGAAAGGGCTCATTCAGGTAGCTAAGTGCTTGGTGTCTAGGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAGGGAAAGGGCTCATTCAGGTAGCTAAGTGCTTGGTGTCTAGGC  249

seq1  AAGAGAAAGTGAGCATGGACATCACACCAAAAAAAGCTGGGTGAGGCAGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAGTGAGCATGGACATCACACCAAAAAAAGCTGGGTGAGGCAGC  299

seq1  GTATACCCATGCTGGGGAAGTGGAAAAGAGCCATCTGGTCAACAAACTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACCCATGCTGGGGAAGTGGAAAAGAGCCATCTGGTCAACAAACTTA  349

seq1  GCAAAATCAGTGACATCCAGGTTCAATGAGATAACCTGCCTCATATCGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATCAGTGACATCCAGGTTCAATGAGATAACCTGCCTCATATCGAA  399

seq1  TGATTGAGGAAGACACCTAATACAGATGTATGTCTGCCGGAACATCTGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGAGGAAGACACCTAATACAGATGTATGTCTGCCGGAACATCTGCA  449

seq1  CATAAACATGCTTACACATACATCAACCCCAAAACATGTACAATTACACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACATGCTTACACATACATCAACCCCAAAACATGTACAATTACACA  499

seq1  CCACTTAAATGACCAAAGTGCTGAGAACCTGAAAGTCACTCAGTAGCTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTAAATGACCAAAGTGCTGAGAACCTGAAAGTCACTCAGTAGCTCC  549

seq1  TGTGTGTACAACTATGCATTAAGAATTC  576
      ||||||||||||||||||||||||||||
seq2  TGTGTGTACAACTATGCATTAAGAATTC  577

seq1: chr4_90715155_90716340
seq2: B6Ng01-155P04.g_70_1259

seq1  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAAAAGGGCTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAAAAGGGCTATTTGATT  50

seq1  TTCTGGAGTCCACCCTCTTGAGTTCTTTATATATATTGGATATTAGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTCCACCCTCTTGAGTTCTTTATATATATTGGATATTAGAAAT  100

seq1  CTATCTGATTTAAGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTTAAGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150

seq1  TTTTGTCTTATTGAGGAGTTGGATTTATAATTGTTTGTGTTTCGATGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGAGGAGTTGGATTTATAATTGTTTGTGTTTCGATGAGA  200

seq1  CATTTATGTCATTTTTCTTCTTTACATCTTCTATGTACAATTTTGACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATGTCATTTTTCTTCTTTACATCTTCTATGTACAATTTTGACTTT  250

seq1  TGAATGCTGAGACAATCTTATTCATTTGTAAGAAAATCCCTTCTTCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCTGAGACAATCTTATTCATTTGTAAGAAAATCCCTTCTTCATCA  300

seq1  CAATGTCCTATCCAATCATATATTTCTAGGATTAATTTCTAAAGTTGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCCTATCCAATCATATATTTCTAGGATTAATTTCTAAAGTTGGTC  350

seq1  AAGATTTCCACACCATTCCAGTATCTGAATGATAGGAAGCTGTAGAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTCCACACCATTCCAGTATCTGAATGATAGGAAGCTGTAGAATCT  400

seq1  AATTTACATTAGCTTCATAAAACTGAGAAGCATTTTCAACTCCTATTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACATTAGCTTCATAAAACTGAGAAGCATTTTCAACTCCTATTCTG  450

seq1  AAAAATCTTGTATAAAATAGAAGTATTTCATCATTAAACAGAAAGTAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTTGTATAAAATAGAAGTATTTCATCATTAAACAGAAAGTAAAT  500

seq1  TTCCCAGTTAAATAACTTTGGTATACAACTTAATCATGGAAAAATTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGTTAAATAACTTTGGTATACAACTTAATCATGGAAAAATTTCAA  550

seq1  GTTAAAGTTTTCATTACTTTATCATTTAACAGTGGTACTCAGAATTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGTTTTCATTACTTTATCATTTAACAGTGGTACTCAGAATTATTT  600

seq1  TTTAGATTTCTTGGCAAGACATTATCCACAATACTTTTCTTATGAATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATTTCTTGGCAAGACATTATCCACAATACTTTTCTTATGAATTTT  650

seq1  TAATGTCCAAGCATATCTAGTGATAGCCCCTTTTACATTTATTGTATTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCCAAGCATATCTAGTGATAGCCCCTTTTACATTTATTGTATTTG  700

seq1  TCATTTGTATATTCTATAATTTCCTTTAACATCTTTACCTGTATAGTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTATATTCTATAATTTCCTTTAACATCTTTACCTGTATAGTTAG  750

seq1  AAAAAGATTCTCAATGGGGGTACCATGAAAGAATTAATACTCAGTGTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGATTCTCAATGGGGGTACCATGAAAGAATTAATACTCAGTGTTGA  800

seq1  AAGTTGTCTATCATGTAAAATGAAATACATTTCTTATGAATCTGAAGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTCTATCATGTAAAATGAAATACATTTCTTATGAATCTGAAGTAA  850

seq1  CATTGTGTTACCTAAGTAACTCCCTATGTATGTAGAGAAAATAGACTAAA  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CATTGTGTTACCTAAGT-ACTCCCTATGTATGTAGAGAAAATAGACTAAA  899

seq1  TGCAATAATAATTGAAAAGAGAAAATT-CTCAATTTTAATGGTCATTTCA  949
      ||| ||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGCCATAATAATTGAAAAGAGAAAATTCCTCAATTTTAATGGTCATTTCA  949

seq1  AATCACCAGTTATTTGC-TTTATGGGTTTCTTTCCTTACCACTTACTTAT  998
      ||||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  AATCACCAGTTATTTGCTTTTATGGGTTTCTTTCCTTA-CACTTACTTAT  998

seq1  TTTGTTTACAATC-TGT-ATACTATTTTGTGTTTCATCAGCTCTTTA-CT  1045
      ||   |||||||| ||| ||||||||||||||||||||||||||||| ||
seq2  TT--GTTACAATCTTGTAATACTATTTTGTGTTTCATCAGCTCTTTACCT  1046

seq1  C-TGTATCATCCTGTTTGCTCTACTTGCCTTGAGTATGATACACCCAGC-  1093
      | ||||||||||||||||||||||||||||  ||||||||||||||||| 
seq2  CTTGTATCATCCTGTTTGCTCTACTTGCCTGAAGTATGATACACCCAGCT  1096

seq1  TTCTC-TTCTCTTTCTAAAATGCAAGT-ATATGT-AGTTTTAA-CCTATA  1139
      ||||| ||||||||||||||||||||| |||||| |||||||| || |||
seq2  TTCTCTTTCTCTTTCTAAAATGCAAGTAATATGTGAGTTTTAACCCAATA  1146

seq1  CTTCTTCCTTAAAATACTAATTTTCTATTATAAATTTCTATCTAAAT  1186
      | |||| ||||||| ||||||||   | |||||| ||| ||||||||
seq2  C-TCTT-CTTAAAAAACTAATTTCTAAATATAAA-TTCAATCTAAAT  1190