BAC Information

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BAC

Clone NameB6Ng01-156D22
Chromosome4 (Build37)
Map Location 65,796,403 - 66,007,544
singlet/doubletdoublet
Overlap geneAstn2
Upstream genePappa, Trim32
Downstream geneLOC667499, Tlr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156D22.bB6Ng01-156D22.g
ACCDH950799DH950800
length1,0801,104
definitionDH950799|Mus musculus domesticus DNA, BAC clone: B6Ng01-156D22, 5' end.DH950800|Mus musculus domesticus DNA, BAC clone: B6Ng01-156D22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,796,403 - 65,797,484)(66,006,433 - 66,007,544)
sequence
gaattcttcattttactggaaaattatgaggaaaagaaactacttagctt
tgtaaaatcatagtggcaggggctaaccttgaacatgaaggaaggcatat
catatctaagaaggcagaaggcttcccctaagcagcagcaacgaagatgc
agcagtatgtggtagtctttagttaaagaaccgaagagccacttgatata
ttctgagttcagcatttctgtaaggatcttgcatttctgcaagtcaccaa
gggatcttggttgcatgctaagcttggcaatttcagtttctataacatat
aagatgatacgtattggatgatttttaaaggaagagcgactccatcaaag
atgtcaacaaacatcaatgtatcattagaaggggggtttaggggaaaaca
tgtgataattgtgaagacaggagcaacttgttccaagcttttcaccatgc
ttcaattttcaattattctttattttattagtatggatatttttctctgt
gtatgtgtgcactgcgtctttgcattcctctcagaggctagaagagggtg
gtagggtaaatgtccccatccccccccaccaccaccaccctgcagaactc
aagtgatagattgttgtgagctaccatgtgcatgttgggaactgaaccta
gctcctctggaaatacagccagtgctcttagtggctaaaccatcttttta
gtaccaccatgccccaatttaaaaatcacaacaactcataagcaataaac
acttcagtaattttctttttgtagaagaaattaaacctagaatttaaatt
gtactcatggtttcaattattaatggagtcaatatactaatccagttgaa
tccattcccaatctaatgagtgctgacttattcactgaatctagttatgc
ccttatctaagaaaacacatataattttcaactttatatgtacatatatt
tatacatataaataaattttatcatatttacccactattggcttttctca
taatcctaccactcttgccaaacttctttctttcaggtgataacaacctt
tctgctttcatgtttttacttttaagtgtg
gaattctctgttaactcatcccactctacaaagttgaatcctacacttgg
gaatgtgctatgaaggaggtcacagagcaacatctacacacagcctgaaa
gaggtgggaaacgtctgacaagcagactggagactcctagcccagggcct
ttctgcccaggagcacaagctgtctttttccttgactgagattagatgtt
tgcctggtgtctttgcatcatcagaatgtgccagatgctcctgggagggt
ctgtcagacaaactcttagaaatgttttcttcaatatttgtgatttctat
ttttttttcttttttcttttttttttcttttttctttttttttttttttt
tgagtacatatgaaggttgaactccctaacctatttttcacaggatggtt
tatatgtaggtcagaagcagaaatggtgaatgacattggtgggccaggac
attgacccatcagtgacaactctccagagttcccctttttcctctcccat
gtgatctggccatatttggattgtcattgtcccattcatttgcatcatgg
aaagactgcaatgagttgaggcccacaccagcctcagaatccgattgatt
attgaaagagaaagtatccttgtttaattcctggttttgagttgtgtcag
aagctggctatagctaatgctaacagagacaaagctgagacagaagcagg
gtgattgcagtgactgtggtctgaatgttcgcatacccctagtttatctg
ttataacctaatctccagtgtggttatattaagagatgtgccctttggga
aatgtaaagaatgaatgtataaattattaaccactcagagtgggataaat
gcccagtaaaaagcatcacattgagggagcttgtttgctctgcccttgct
atacaagagatgcagcaagaagaacactacctatgagatttgtgtcctta
cagactcaaattggtagctatcactaacttatctttttgagctatgaaca
ataattctactttattttaatttttttacgccaaagctttttgtttacag
tgacctaccccgatttattcaccacccacatttaagggaagatttttttt
attt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_65796403_65797484
seq2: B6Ng01-156D22.b_46_1125

seq1  GAATTCTTCATTTTACTGGAAAATTATGAGGAAAAGAAACTACTTAGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATTTTACTGGAAAATTATGAGGAAAAGAAACTACTTAGCTT  50

seq1  TGTAAAATCATAGTGGCAGGGGCTAACCTTGAACATGAAGGAAGGCATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATCATAGTGGCAGGGGCTAACCTTGAACATGAAGGAAGGCATAT  100

seq1  CATATCTAAGAAGGCAGAAGGCTTCCCCTAAGCAGCAGCAACGAAGATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTAAGAAGGCAGAAGGCTTCCCCTAAGCAGCAGCAACGAAGATGC  150

seq1  AGCAGTATGTGGTAGTCTTTAGTTAAAGAACCGAAGAGCCACTTGATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTATGTGGTAGTCTTTAGTTAAAGAACCGAAGAGCCACTTGATATA  200

seq1  TTCTGAGTTCAGCATTTCTGTAAGGATCTTGCATTTCTGCAAGTCACCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTTCAGCATTTCTGTAAGGATCTTGCATTTCTGCAAGTCACCAA  250

seq1  GGGATCTTGGTTGCATGCTAAGCTTGGCAATTTCAGTTTCTATAACATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTTGGTTGCATGCTAAGCTTGGCAATTTCAGTTTCTATAACATAT  300

seq1  AAGATGATACGTATTGGATGATTTTTAAAGGAAGAGCGACTCCATCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGATACGTATTGGATGATTTTTAAAGGAAGAGCGACTCCATCAAAG  350

seq1  ATGTCAACAAACATCAATGTATCATTAGAAGGGGGGTTTAGGGGAAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAACAAACATCAATGTATCATTAGAAGGGGGGTTTAGGGGAAAACA  400

seq1  TGTGATAATTGTGAAGACAGGAGCAACTTGTTCCAAGCTTTTCACCATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATAATTGTGAAGACAGGAGCAACTTGTTCCAAGCTTTTCACCATGC  450

seq1  TTCAATTTTCAATTATTCTTTATTTTATTAGTATGGATATTTTTCTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTTCAATTATTCTTTATTTTATTAGTATGGATATTTTTCTCTGT  500

seq1  GTATGTGTGCACTGCGTCTTTGCATTCCTCTCAGAGGCTAGAAGAGGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTGCACTGCGTCTTTGCATTCCTCTCAGAGGCTAGAAGAGGGTG  550

seq1  GTAGGGTAAATGTCCCCATCCCCCCCCACCACCACCACCCTGCAGAACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGTAAATGTCCCCATCCCCCCCCACCACCACCACCCTGCAGAACTC  600

seq1  AAGTGATAGATTGTTGTGAGCTACCATGTGCATGTTGGGAACTGAACCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATAGATTGTTGTGAGCTACCATGTGCATGTTGGGAACTGAACCTA  650

seq1  GCTCCTCTGGAAATACAGCCAGTGCTCTTAGTGGCTAAACCATCTTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCTGGAAATACAGCCAGTGCTCTTAGTGGCTAAACCATCTTTTTA  700

seq1  GTACCACCATGCCCCAATTTAAAAATCACAACAACTCATAAGCAATAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCACCATGCCCCAATTTAAAAATCACAACAACTCATAAGCAATAAAC  750

seq1  ACTTCAGTAATTTTCTTTTTGTAGAAGAAATTAAACCTAGAATTTAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGTAATTTTCTTTTTGTAGAAGAAATTAAACCTAGAATTTAAATT  800

seq1  GTACTCATGGTTTCAATTATTAATGGAGTCAATATACTAATCCAGTTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCATGGTTTCAATTATTAATGGAGTCAATATACTAATCCAGTTGAA  850

seq1  TCCATTTCCAATTCTAATGAGTGCTGACTTATTCACTGAATCTAGTTATG  900
      |||||| |||| ||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCCCAA-TCTAATGAGTGCTGACTTATTCACTGAATCTAGTTATG  899

seq1  CCCTAATCTAAGAAAACACATATAATTTTCAACTTTATATGTACATATAT  950
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTATCTAAGAAAACACATATAATTTTCAACTTTATATGTACATATAT  949

seq1  TTAATACATATAAAATAAATTTTTATCATATTTACCCACTATTGCCTTTT  1000
      || |||||||| ||||||| |||||||||||||||||||||||| |||||
seq2  TT-ATACATAT-AAATAAA-TTTTATCATATTTACCCACTATTGGCTTTT  996

seq1  CTCATAATCCTACCACTCCTGCCAAACCTCTTCTTTTCAGTTGAGTACCA  1050
      |||||||||||||||||| |||||||| ||||  |||||| |||  || |
seq2  CTCATAATCCTACCACTCTTGCCAAACTTCTTTCTTTCAGGTGATAACAA  1046

seq1  CC-TTCTGCTTTCATG-TTTTACTTTTATGTGTG  1082
      || ||||||||||||| ||||||||||| |||||
seq2  CCTTTCTGCTTTCATGTTTTTACTTTTAAGTGTG  1080

seq1: chr4_66006433_66007544
seq2: B6Ng01-156D22.g_65_1168 (reverse)

seq1  AAATAAATAAATCTTTTCCTTTAAATGTGGGTGTTGTATTAATCTGAGTA  50
      ||||||| |||  | |||| ||||||||||||| || || |||| | |||
seq2  AAATAAA-AAAAATCTTCCCTTAAATGTGGGTGGTGAATAAATCGGGGTA  49

seq1  GGTCACTGT-AACAAAATGCCTTTGGCTGTATAAAATATAAATAATGTAG  99
      ||||||||| ||||||| | |||||||   | |||||  |||||| ||||
seq2  GGTCACTGTAAACAAAAAG-CTTTGGCGTAAAAAAATTAAAATAAAGTAG  98

seq1  AATTATTGTTCATAGCTCAAGAAGATAAGTTTAGTGTATAGCTACCAATT  149
      |||||||||||||||||||| |||||||| |||||| ||||||||||| |
seq2  AATTATTGTTCATAGCTCAAAAAGATAAG-TTAGTG-ATAGCTACCAA-T  145

seq1  TTGAGTCTGGTAAGGACACACAATCTCATAGGTAGTG-TCTTCTTGCTGC  198
      |||||||| ||||||||||| |||||||||||||||| ||||||||||||
seq2  TTGAGTCT-GTAAGGACACA-AATCTCATAGGTAGTGTTCTTCTTGCTGC  193

seq1  ATCTCCTTGTAGTAGCAAGGGCAGAGCAAACAAGCTCCCTCAATGTGATG  248
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATCT-CTTGTA-TAGCAAGGGCAGAGCAAACAAGCTCCCTCAATGTGATG  241

seq1  CTTTTTACTGGGCATTTATCCCACTCCTGAGTGGTTAATAATTTATACAT  298
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTTTTTACTGGGCATTTATCCCACT-CTGAGTGGTTAATAATTTATACAT  290

seq1  TCATTCTTTACATTTCCCAAAGGGCACATCTCTTAATATAACCACACTGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTTACATTTCCCAAAGGGCACATCTCTTAATATAACCACACTGG  340

seq1  AGATTAGGTTATAACAGATAAACTAGGGGTATGCGAACATTCAGACCACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGGTTATAACAGATAAACTAGGGGTATGCGAACATTCAGACCACA  390

seq1  GTCACTGCAATCACCCTGCTTCTGTCTCAGCTTTGTCTCTGTTAGCATTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGCAATCACCCTGCTTCTGTCTCAGCTTTGTCTCTGTTAGCATTA  440

seq1  GCTATAGCCAGCTTCTGACACAACTCAAAACCAGGAATTAAACAAGGATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGCCAGCTTCTGACACAACTCAAAACCAGGAATTAAACAAGGATA  490

seq1  CTTTCTCTTTCAATAATCAATCGGATTCTGAGGCTGGTGTGGGCCTCAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTTTCAATAATCAATCGGATTCTGAGGCTGGTGTGGGCCTCAAC  540

seq1  TCATTGCAGTCTTTCCATGATGCAAATGAATGGGACAATGACAATCCAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCAGTCTTTCCATGATGCAAATGAATGGGACAATGACAATCCAAA  590

seq1  TATGGCCAGATCACATGGGAGAGGAAAAAGGGGAACTCTGGAGAGTTGTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCCAGATCACATGGGAGAGGAAAAAGGGGAACTCTGGAGAGTTGTC  640

seq1  ACTGATGGGTCAATGTCCTGGCCCACCAATGTCATTCACCATTTCTGCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGGGTCAATGTCCTGGCCCACCAATGTCATTCACCATTTCTGCTT  690

seq1  CTGACCTACATATAAACCATCCTGTGAAAAATAGGTTAGGGAGTTCAACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTACATATAAACCATCCTGTGAAAAATAGGTTAGGGAGTTCAACC  740

seq1  TTCATATGTACTCAAAAAAAAAAAAAAAAAGAAAAAAGAAAAAAAAAAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATGTACTCAAAAAAAAAAAAAAAAAGAAAAAAGAAAAAAAAAAGA  790

seq1  AAAAAGAAAAAAAAATAGAAATCACAAATATTGAAGAAAACATTTCTAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAAAAAAATAGAAATCACAAATATTGAAGAAAACATTTCTAAG  840

seq1  AGTTTGTCTGACAGACCCTCCCAGGAGCATCTGGCACATTCTGATGATGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTCTGACAGACCCTCCCAGGAGCATCTGGCACATTCTGATGATGC  890

seq1  AAAGACACCAGGCAAACATCTAATCTCAGTCAAGGAAAAAGACAGCTTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACACCAGGCAAACATCTAATCTCAGTCAAGGAAAAAGACAGCTTGT  940

seq1  GCTCCTGGGCAGAAAGGCCCTGGGCTAGGAGTCTCCAGTCTGCTTGTCAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGGGCAGAAAGGCCCTGGGCTAGGAGTCTCCAGTCTGCTTGTCAG  990

seq1  ACGTTTCCCACCTCTTTCAGGCTGTGTGTAGATGTTGCTCTGTGACCTCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTCCCACCTCTTTCAGGCTGTGTGTAGATGTTGCTCTGTGACCTCC  1040

seq1  TTCATAGCACATTCCCAAGTGTAGGATTCAACTTTGTAGAGTGGGATGAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGCACATTCCCAAGTGTAGGATTCAACTTTGTAGAGTGGGATGAG  1090

seq1  TTAACAGAGAATTC  1112
      ||||||||||||||
seq2  TTAACAGAGAATTC  1104