BAC Information

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BAC

Clone NameB6Ng01-156E05
Chromosome4 (Build37)
Map Location 153,690,645 - 153,800,980
singlet/doubletdoublet
Overlap genePrdm16
Upstream geneAjap1, BC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik, Megf6, Arhgef16
Downstream geneLOC100043342, LOC100042178, Actrt2, B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358, Plch2, Pex10, Rer1, Morn1, Ski, 2610002J02Rik, Prkcz, Gabrd, 2010015L04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156E05.bB6Ng01-156E05.g
ACCDH950813DH950814
length1,024887
definitionDH950813|Mus musculus domesticus DNA, BAC clone: B6Ng01-156E05, 5' end.DH950814|Mus musculus domesticus DNA, BAC clone: B6Ng01-156E05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,690,645 - 153,691,678)(153,800,088 - 153,800,980)
sequence
gaattccacaaacagacacaataatgaccgctaaacacgagccatgcaca
gctttatcaacacaacagcaatttacagggaagggggcagggcagacacc
agccccctccttaatggttttttaattttcttttttaacgttatatggaa
accagacatttacatttgattcctttctcaacactatatagttctaaaag
gaaaaaaaaaaaaacccaacaacaacaaaaacagaaacagaaacgaactg
aatccgatctgaatgtaacaatggcaactctcatacagggtggagattct
cgcgggtgtcagggatatatatatatatttatatttatatttatatacta
ttggttcaaagtacacacatacagcacacatgcacacacacacacaccac
gcaccaccacacgcacaggctttaagttacgtattctgacaccagggccc
ccctttccccacactgaagagagtagctgcgctgtgggagacactgagga
aacccccagcttcccccagttgcaaggggatcaatcgcacatctaaagac
tcaacctttccccctcctagaagtgaggatgtgaattggtgacagacaga
caatggctggaatggtgggggaagtgaccttgtctggagagaattcaaga
atgtcttgtcacagtatcgctcagggctagggacagtcttcatggctttc
gatacccggctgatctccgtggacagggatgtcccactgtctactggcag
agggagcgctgtctggtcaaggcctctccaccctcctgtcccagcaacag
ctcggaggccttttcttccctacctcgaacggcacactgaacagctcatt
aggtctcagccacttgggcagggacagggaccaaatccagtgctttgagc
tctagtcgaaagcacgggagtgaactcacctagtgcatcccagacactca
ctgtgcaggcagatgaggtagaggagccaatagctaaggatttgaccctg
gggagatacggacagtcagtctgg
gaattcttgttttaagtaccacgtgcatacattctctccttccaccttcg
agtgggctctgggaattgaacttaggttgccagacttgggtggcaagccc
ctctcctggctctgccctctcatcagcccgtgggaggattcacaggtaga
gtggtattcctcccctatggcaccgcctcctgtgcccactactccagcac
gtaatcctggctcctggggaaagctttccagttgcagaagcccagggctg
ctacaggggtggctgggaagaagggaggggatggggacagaaggagactt
tcaggattacaggacaaggaccagaagctgcctgtggcatacaggaggtc
tcatagcctatctcagtggctccaacgtgaactaccgtgagtactagatt
cctggcccctgggactgaactggggcagggtggacttgctatggggctgt
tccatgccagagttggcctcatctacctggaactctcggccaaataggtg
ccaaacctttgatgcttgtttctgtgcacaaatctctgccatactataaa
tccagggagggacttagagaagatgacatcataatactaaggacccacag
tctgatcaccaggacaggataccctaggacaacacagctacaccttgcaa
aatgtaaagaacagagcaggacgccataaaccattcctctgcacaggtcc
tatctcacgaggccatcgatgcacatattctcatcatgcctgtcaatatg
aacgtccggggacgtctcaagacctgggggatcaccccgactctccgatg
atgtcagaggcttttgggacacatccttcatcttttcaaggaccccatta
tatgcagacctgtgagactaggctggggatttcaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_153690645_153691678
seq2: B6Ng01-156E05.b_44_1067

seq1  GAATTCCACAAACAGACACAATAATGACCGCTAAACACGAGCCATGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAAACAGACACAATAATGACCGCTAAACACGAGCCATGCACA  50

seq1  GCTTTATCAACACAACAGCAATTTACAGGGAAGGGGGCAGGGCAGACACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATCAACACAACAGCAATTTACAGGGAAGGGGGCAGGGCAGACACC  100

seq1  AGCCCCCTCCTTAATGGTTTTTTAATTTTCTTTTTTAACGTTATATGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCCTCCTTAATGGTTTTTTAATTTTCTTTTTTAACGTTATATGGAA  150

seq1  ACCAGACATTTACATTTGATTCCTTTCTCAACACTATATAGTTCTAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACATTTACATTTGATTCCTTTCTCAACACTATATAGTTCTAAAAG  200

seq1  GAAAAAAAAAAAAACCCAACAACAACAAAAACAGAAACAGAAACGAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAAAAACCCAACAACAACAAAAACAGAAACAGAAACGAACTG  250

seq1  AATCCGATCTGAATGTAACAATGGCAACTCTCATACAGGGTGGAGATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCGATCTGAATGTAACAATGGCAACTCTCATACAGGGTGGAGATTCT  300

seq1  CGCGGGTGTCAGGGATATATATATATATTTATATTTATATTTATATACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGGTGTCAGGGATATATATATATATTTATATTTATATTTATATACTA  350

seq1  TTGGTTCAAAGTACACACATACAGCACACATGCACACACACACACACCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCAAAGTACACACATACAGCACACATGCACACACACACACACCAC  400

seq1  GCACCACCACACGCACAGGCTTTAAGTTACGTATTCTGACACCAGGGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACCACACGCACAGGCTTTAAGTTACGTATTCTGACACCAGGGCCC  450

seq1  CCCTTTCCCCACACTGAAGAGAGTAGCTGCGCTGTGGGAGACACTGAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCCCCACACTGAAGAGAGTAGCTGCGCTGTGGGAGACACTGAGGA  500

seq1  AACCCCCAGCTTCCCCCAGTTGCAAGGGGATCAATCGCACATCTAAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCAGCTTCCCCCAGTTGCAAGGGGATCAATCGCACATCTAAAGAC  550

seq1  TCAACCTTTCCCCCTCCTAGAAGTGAGGATGTGAATTGGTGACAGACAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTTTCCCCCTCCTAGAAGTGAGGATGTGAATTGGTGACAGACAGA  600

seq1  CAATGGCTGGAATGGTGGGGGAAGTGACCTTGTCTGGGGAGAATTCAAGA  650
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAATGGCTGGAATGGTGGGGGAAGTGACCTTGTCTGGAGAGAATTCAAGA  650

seq1  ATGTCTTGTCACAGTATCGCTCAGGGCTAGGGACAGTCTTCATGGCTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTGTCACAGTATCGCTCAGGGCTAGGGACAGTCTTCATGGCTTTC  700

seq1  GATACCCGGCTGATCTCCGTGGACAGGGATGTCCCAGTGTCTACTGGCAG  750
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  GATACCCGGCTGATCTCCGTGGACAGGGATGTCCCACTGTCTACTGGCA-  749

seq1  GAGGGAGCGCTGTCTGTCCCAGGCCTCTCCACCCTCCTGTCCCAGCAACA  800
      ||||||||||||||||  | ||||||||||||||||||||||||||||||
seq2  GAGGGAGCGCTGTCTGGTCAAGGCCTCTCCACCCTCCTGTCCCAGCAACA  799

seq1  GCTCGGAGGCCTTTTCTTCCCTACCTCGAACGGCACAGTGAACAGCTCAG  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||| 
seq2  GCTCGGAGGCCTTTTCTTCCCTACCTCGAACGGCACACTGAACAGCTCAT  849

seq1  TAGGTCTCAGCCACTTGGGCAGGGACAGGGACCACAATCCAGTGCTTTGA  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TAGGTCTCAGCCACTTGGGCAGGGACAGGGACCA-AATCCAGTGCTTTGA  898

seq1  GCTTCGAGTCTAAAACACGTGATATGT-ATTTAAGCAAGTGCTTCGCAGA  949
      || || |||| ||| |||| ||   || |  | | | ||||| || ||||
seq2  GC-TCTAGTCGAAAGCACGGGA---GTGAACTCACCTAGTGCATCCCAGA  944

seq1  CACTCACTGTGGAGGCAGATGAGGGAGAGGAAGCCAAGAGCTCTGGGTCT  999
      ||||||||||| |||||||||||| ||||| |||||| ||||  || | |
seq2  CACTCACTGTGCAGGCAGATGAGGTAGAGG-AGCCAATAGCTAAGGAT-T  992

seq1  GGACCCTGGGAGGCAGA-GGGGTCAGGTCAGTCTGG  1034
       |||||||   || |||   || || ||||||||||
seq2  TGACCCTG---GGGAGATACGGACA-GTCAGTCTGG  1024

seq1: chr4_153800088_153800980
seq2: B6Ng01-156E05.g_66_952 (reverse)

seq1  GTTTGAAAT-CCCAGCCCCAGCTCTAAGCTCTGCCTATAGCTGGG-CTTT  48
      ||||||||| |||||||    |||  || ||||| ||||   ||| | ||
seq2  GTTTGAAATCCCCAGCCTAGTCTCACAGGTCTGCATATAATGGGGTCCTT  50

seq1  GTAGAAAAGGGTGAAGGATGTCTTCCCAGAAGCCCCTCACATCATCGGAG  98
      |    ||| | ||||||||||  ||||| ||||| || ||||||||||||
seq2  G----AAAAGATGAAGGATGT-GTCCCAAAAGCCTCTGACATCATCGGAG  95

seq1  TAGTCGGTGACTGCTGGCCCCAGGTTCCTGAGGCGTCCCTGGAAGGACAT  148
       |||||| |  || |  ||||||| || |||| |||||| ||| |  |||
seq2  -AGTCGGGG--TGAT-CCCCCAGG-TCTTGAGACGTCCCCGGACGTTCAT  140

seq1  ACTGACAGGATTGATGATAAAATCTGCAGCGATGGCCTCCAGAGATAGGA  198
      | |||||||  |||||| || || |||| ||||||||||  |||||||||
seq2  ATTGACAGGCATGATGAGAATATGTGCATCGATGGCCTCGTGAGATAGGA  190

seq1  CCTGGGCAGAGGAATGGTTTATGGCGTCCTGCCCTGGTC-TTCCATTCTG  247
      |||| ||||||||||||||||||||||||||| ||| || || |||| ||
seq2  CCTGTGCAGAGGAATGGTTTATGGCGTCCTGCTCTGTTCTTTACATTTTG  240

seq1  CAAGGTGTAGC-CTGTTGTCCTTGGGTAACCTGTCCTGGTGATCAGACTG  296
      |||||||||||  ||||||||| ||||| |||||||||||||||||||||
seq2  CAAGGTGTAGCTGTGTTGTCCTAGGGTATCCTGTCCTGGTGATCAGACTG  290

seq1  TGGGTCCTTAGTACTATGATGTCATCTTCTCTAAGTCCCTCCCTGGATTT  346
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCTTAGTATTATGATGTCATCTTCTCTAAGTCCCTCCCTGGATTT  340

seq1  ATAGTCTGGCAGAGACTTGGGCACAGAAACAAGCATCAAAGGTTTGGCAC  396
      ||||| ||||||||| ||| ||||||||||||||||||||||||||||||
seq2  ATAGTATGGCAGAGATTTGTGCACAGAAACAAGCATCAAAGGTTTGGCAC  390

seq1  CTACTTGGCCGAGAGTTCCAGGTAGACGAGGCCAACTCTGGCATGGAACA  446
      ||| |||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTATTTGGCCGAGAGTTCCAGGTAGATGAGGCCAACTCTGGCATGGAACA  440

seq1  GCCCCATAGCAAGTCCACACTGCCCCAGTTCAGTCCCAGGGGCCAGGAAT  496
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCCCCATAGCAAGTCCACCCTGCCCCAGTTCAGTCCCAGGGGCCAGGAAT  490

seq1  CTAGTACTCACGGTAGTTCACGTTGGAGCCACTGAGCTAGGCTATGAGAC  546
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTAGTACTCACGGTAGTTCACGTTGGAGCCACTGAGATAGGCTATGAGAC  540

seq1  CTCCTCTATGCCACAGGCAGCTTCTGGTCCTTGTCCTGTAATCCTGAAAG  596
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTATGCCACAGGCAGCTTCTGGTCCTTGTCCTGTAATCCTGAAAG  590

seq1  TCTCCTTCTGTCCCCATCCCCTCCCTTCTTCCCAGCCACCCCTGTAGCAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCTGTCCCCATCCCCTCCCTTCTTCCCAGCCACCCCTGTAGCAG  640

seq1  CCCTGGGCTTCTGCAACTGGAAAGCTTTCCCCAGGAGCCAGGATTACGTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGCTTCTGCAACTGGAAAGCTTTCCCCAGGAGCCAGGATTACGTG  690

seq1  CTGGAGTAGTGGGCACAGGAGGCGGTGCCATAGGGGAGGAATACCACTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGTAGTGGGCACAGGAGGCGGTGCCATAGGGGAGGAATACCACTCT  740

seq1  ACCTGTGAATCCTCCCACGGGCTGATGAGAGGGCAGAGCCAGGAGAGGGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGAATCCTCCCACGGGCTGATGAGAGGGCAGAGCCAGGAGAGGGG  790

seq1  CTTGCCACCCAAGTCTGGCAACCTAAGTTCAATTCCCAGAGCCCACTCGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCACCCAAGTCTGGCAACCTAAGTTCAATTCCCAGAGCCCACTCGA  840

seq1  AGGTGGAAGGAGAGAATGTATGCACGTGGTACTTAAAACAAGAATTC  893
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAAGGAGAGAATGTATGCACGTGGTACTTAAAACAAGAATTC  887