BAC Information

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BAC

Clone NameB6Ng01-156F21
Chromosome4 (Build37)
Map Location 5,350,805 - 5,351,895
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039297, LOC622019, Impad1, LOC100039338
Downstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156F21.bB6Ng01-156F21.g
ACCDH950890DH950891
length1,2231,073
definitionDH950890|Mus musculus domesticus DNA, BAC clone: B6Ng01-156F21, 5' end.DH950891|Mus musculus domesticus DNA, BAC clone: B6Ng01-156F21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctgtcagatttgggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttatcgattcttgatcttacagcacaagccattgctgtt
ctattaaggaatttttcccctgtacccatatcttcgaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagtcccttaa
tccacttagatttgaccttagtacaaggagatagaaatggatcaattcgc
attcttctacacgataactgccagttgtgccagcaccatttgttgaaatt
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtgggttcatctctgggtcttcaattctgttccattga
tctacttgtctgtcactataccagtaccatgcagttttgatcacaattgc
tctgtagtaaagtttaggtccggcatgttgattccaccagaggttctttt
atccttgagaagagtttttgctatcctcggttttttgttattccagatga
atctgccgattgccctttctaattcgttgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tacaatgttgatcctgccaatccatgagcatgggagatctttccatcttc
tgagatcttctttaatttttttttagagacttgaagttcttatcatacag
atctttcacttccttagtagagtcatgccaggtattttatattatttgtg
actatgagaaggtgttgtttccctaatttctttctcagcctgtttatcct
ttgtatacagaagggcattgacttgatgagttaattttatatccagctac
ttcaccgaaactgttatcagctaaggagtctctgtggaattttaggcaac
tataataacatacatatctactgcaaaggtgatttgactctcatcttcca
attatccttggatccttgtgtggtattgctggcggtgctccaagcatgtg
aacagatagcgtaatatttgtga
gaattcaaagtaagtacatccacagaaattaaaaaaaaaaaaaaaaaaaa
aaaaaagatgcaaactcctgaaagaattccaacaacaaaatgaaataaag
aaataaaagtgtacctcaactaagagataaaaatatgaggagatggagac
tcaactaaaagattgaaaagaaaaaatgcaataagcaaatacttgaatag
cttcaaggaaagcctcaccaacaaaatagataaagcaacagacagaagac
taggggttaaagacaaggtagaggcaattgataattgagacagtaacaaa
gaaacaagtaacaatgaggaaaaacttcgtcttttatgctacattttgtg
tattttatctgaatcttgtttttaaaaacacaaacacagagaggctgaag
ggggaatcaaaatgagaccctggtgacaatgtcgcacatcttaacacaac
aaaatggtttgagctaagggaaaatgagtgttcccacacattgtagtggg
tgtttctatgatataagagttgtggcctacaagtgaacagtttctttcaa
gttataaaaaagctataaattcaacattagtggtttcctttgtagaatct
attcaatgattacttcaatgtatgaatataaaacaaagaaatgattattc
atgtgtacatatttgagaaacgcaaaattgtagaagcaagtttattcatt
ttcaggtcaatggctaagtcaagagaatacagtcataacacacaatacta
gtcaaatattaaaaatagataagggtgaactctatgaactataacaatga
tcacctggcaagatacaaacattgaagcaacagtggcatgttatatggta
agcacatgttttctgattttatttaaggcctgttctacagaaataaatac
atgtgtggtattataaatctggccagaattcatggtcagtatctcacagt
cccggggactacttactatttttctggcagaaagacatatttcaactact
ctctaatcataatatccctctatcccagatactgcactctcagaactcac
gaagaacatctttgagtggatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_5350805_5351895
seq2: B6Ng01-156F21.g_66_1138

seq1  GAATTCAAAGTAAGTACATCCACAGAAATTAAAAAAAAAAAAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTAAGTACATCCACAGAAATTAAAAAAAAAAAAAAAAAAAA  50

seq1  AAAAAAGATGCAAACTCCTGAAAGAATTCCAACAACAAAATGAAATAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGATGCAAACTCCTGAAAGAATTCCAACAACAAAATGAAATAAAG  100

seq1  AAATAAAAGTGTACCTCAACTAAGAGATAAAAATATGAGGAGATGGAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAGTGTACCTCAACTAAGAGATAAAAATATGAGGAGATGGAGAC  150

seq1  TCAACTAAAAGATTGAAAAGAAAAAATGCAATAAGCAAATACTTGAATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTAAAAGATTGAAAAGAAAAAATGCAATAAGCAAATACTTGAATAG  200

seq1  CTTCAAGGAAAGCCTCACCAACAAAATAGATAAAGCAACAGACAGAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGGAAAGCCTCACCAACAAAATAGATAAAGCAACAGACAGAAGAC  250

seq1  TAGGGGTTAAAGACAAGGTAGAGGCAATTGATAATTGAGACAGTAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGTTAAAGACAAGGTAGAGGCAATTGATAATTGAGACAGTAACAAA  300

seq1  GAAACAAGTAACAATGAGGAAAAACTTCGTCTTTTATGCTACATTTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGTAACAATGAGGAAAAACTTCGTCTTTTATGCTACATTTTGTG  350

seq1  TATTTTATCTGAATCTTGTTTTTAAAAACACAAACACAGAGAGGCTGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATCTGAATCTTGTTTTTAAAAACACAAACACAGAGAGGCTGAAG  400

seq1  GGGGAATCAAAATGAGACCCTGGTGACAATGTCGCACATCTTAACACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATCAAAATGAGACCCTGGTGACAATGTCGCACATCTTAACACAAC  450

seq1  AAAATGGTTTGAGCTAAGGGAAAATGAGTGTTCCCACACATTGTAGTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGTTTGAGCTAAGGGAAAATGAGTGTTCCCACACATTGTAGTGGG  500

seq1  TGTTTCTATGATATAAGAGTTGTGGCCTACAAGTGAACAGTTTCTTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTATGATATAAGAGTTGTGGCCTACAAGTGAACAGTTTCTTTCAA  550

seq1  GTTATAAAAAAGCTATAAATTCAACATTAGTGGTTTCCTTTGTAGAATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAAAAAAGCTATAAATTCAACATTAGTGGTTTCCTTTGTAGAATCT  600

seq1  ATTCAATGATTACTTCAATGTATGAATATAAAACAAAGAAATGATTATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATGATTACTTCAATGTATGAATATAAAACAAAGAAATGATTATTC  650

seq1  ATGTGTACATATTTGAGAAACGCAAAATTGTAGAAGCAAGTTTATTCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTACATATTTGAGAAACGCAAAATTGTAGAAGCAAGTTTATTCATT  700

seq1  TTCAGGTCAATGGCTAAGTCAAGAGAATACAGTCATAACACACAATACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTCAATGGCTAAGTCAAGAGAATACAGTCATAACACACAATACTA  750

seq1  GTCAAATATTAAAAATAGATAAGGGTGAACTCTATGAACTATAACAATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATATTAAAAATAGATAAGGGTGAACTCTATGAACTATAACAATGA  800

seq1  TCACCTGGCAAGATACAAACATTGAAGCAACAGTGGCATGTTATATGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGGCAAGATACAAACATTGAAGCAACAGTGGCATGTTATATGGTA  850

seq1  AGCACATGTTTTCTGATTTTATTTAAGGCCTGTTCTACAGAAATAAATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATGTTTTCTGATTTTATTTAAGGCCTGTTCTACAGAAATAAATAC  900

seq1  ATGTGTGGTATTATAAATCTGGCCAAGAATTCATGGTCAGGTATCTCACA  950
      |||||||||||||||||||||||| |||||||||||||| ||||||||||
seq2  ATGTGTGGTATTATAAATCTGGCC-AGAATTCATGGTCA-GTATCTCACA  948

seq1  GGTCCCGGGGGACTACTTACTATTTTTCTGGCAGAAAGAACATATTTTCA  1000
       ||||| ||||||||||||||||||||||||||||||| ||||||||   
seq2  -GTCCC-GGGGACTACTTACTATTTTTCTGGCAGAAAG-ACATATTT--C  993

seq1  AACTACTCTCTAAATTCATAATATCCCTCTATCCACAGATTACTGCCAAC  1050
      |||||||||||||  ||||||||||||||||||| |||| ||||||  ||
seq2  AACTACTCTCTAA--TCATAATATCCCTCTATCC-CAGA-TACTGC--AC  1037

seq1  TCTCAGACCTCACCAGAGAACATTCTTTTTGAAGTGGATGG  1091
      ||||||| ||||| | |||||| |||||    |||||||||
seq2  TCTCAGAACTCACGA-AGAACA-TCTTT---GAGTGGATGG  1073