BAC Information

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BAC

Clone NameB6Ng01-156I06
Chromosome4 (Build37)
Map Location 107,914,621 - 107,915,782
singlet/doubletsinglet
Overlap geneZyg11b
Upstream geneLrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a
Downstream geneLOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b, Nrd1, Osbpl9, Calr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156I06.bB6Ng01-156I06.g
ACCDH951000DH951001
length1,149945
definitionDH951000|Mus musculus domesticus DNA, BAC clone: B6Ng01-156I06, 5' end.DH951001|Mus musculus domesticus DNA, BAC clone: B6Ng01-156I06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctctggcttcggctcaaggtccatgcttgttcacctctggatat
taaatgggcgataattccagctgcgaagtaactgacttctacttcaacac
tgtgtaggagactgctgatgtggtctataaaatccttccacattagttca
gaatgcagctcttgtacttcagctatgttgttctgggagaaaaagaaggt
ataaaagttagtcttctctgaaggaacagctggcggggctgctcgcagac
actgcaccacaagcatcttggtgctctttgacaaagcatgcaagccgggc
agtttgcaaatgaagtaagggaagtcacgggagcgtgagggacaaatgtc
tctcatagtcttgcatgcttgaacacttgatgaacaactgatgaaggtgt
cagaagtcgtagggggtgtggccttgctggagaagtttgtcactgggaga
acagtgacaaggtttcaaagctttgcaccacagtacacctgccccttcta
tgctgtgcttccaatcaaaatgggatttctcaactcctgttcctgacgcc
atcctgccactggctgccatcagagactctttttttgttgttttgttttg
gtttttggtttttcgaaacagggtttctctgtgtagccctggctatcctg
gaactcactctgtagaccaggctggccttgaactcagaaatccgcctgcc
tctgcctcccaggtgctgggattaaaggagtgcgccaccacacctggttc
atagactcttttaaaaaacgttttttttcctagttttgagatttttttcc
ttctttttttaatgtgagtgcctgaatctatctctatctatctatctatc
tatctatctatcttatctatctattctatctatctattgtgtgtgcacca
gctctgtaaggggcttacagaggccagaaaagggcactggatccctgggg
actagaactgcagatccttgtgattctctatgtggggataatctggagag
caccatactatggaccactgagctaatcacatggcatcttgagactctgg
aagctaatcccgtgtactgcctcccaggctggcgttactgctacagaaac
tatcttcttctttatgttccaagacagaattctctgtggtaggcctcgc
gaattcaccatcctttgagtacatttccttggtctcaactactccaaccc
atctttcctattgcaaggtgaaagatgttctagaaagctctccctagcaa
cccgtctgttccactgcactttgaccgagaacgcctgctgggctctttcc
caacctctctctttccattgcccaggaggaaattctcctccttgcctgat
ctctgggccttatctctatggttttcggagcatagcaaacatctgagtca
aaacaggtgttcaaaaggcactaggaggggtggaggatgggggtgcagca
ggactggtgagatggctcagcaggtgaaagggcttaccagcaaatgtaga
ctcgaattctgtctaggacccacatggtggaaacagagccaactgtaaac
atgcaccttctcacgtacactataactctagctccggaggatccaacaac
ctcttctggcctctggtgattacttcccaaggtcagactagctgactcag
acttgtcccataggagaaaagaaacgtttgcagaaaacccaggactggag
gcaggagagacagcccaaccattaagtgtagggctcttaactgctctgct
cttccagaggatccaggtttgaatgcagcaccgaccgacacggcatctgc
caaccatctgtaattccatttccaatggactcaattccctctcctggcct
ctgtttaccaggtatgcaagtggtgcacagacacacattcacacagaaca
tccacacatatatagttttaaagactaaaccaccaatcaagaaacacatg
gtaggactcgtatctctagctgcatatgtagctgagtatggcctagtcgg
tcatcaatgggaggagagcccttggtcttgtgaaggttctatgcccagta
ggggaatgcctgggcctgaaaaaggagtggttggggttggggacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_107914621_107915782
seq2: B6Ng01-156I06.b_47_1195

seq1  GAATTCCTCTGGCTTCGGCTCAAGGTCCATGCTTGTTCACCTCTGGATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGGCTTCGGCTCAAGGTCCATGCTTGTTCACCTCTGGATAT  50

seq1  TAAATGGGCGATAATTCCAGCTGCGAAGTAACTGACTTCTACTTCAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGGCGATAATTCCAGCTGCGAAGTAACTGACTTCTACTTCAACAC  100

seq1  TGTGTAGGAGACTGCTGATGTGGTCTATAAAATCCTTCCACATTAGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGGAGACTGCTGATGTGGTCTATAAAATCCTTCCACATTAGTTCA  150

seq1  GAATGCAGCTCTTGTACTTCAGCTATGTTGTTCTGGGAGAAAAAGAAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCAGCTCTTGTACTTCAGCTATGTTGTTCTGGGAGAAAAAGAAGGT  200

seq1  ATAAAAGTTAGTCTTCTCTGAAGGAACAGCTGGCGGGGCTGCTCGCAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGTTAGTCTTCTCTGAAGGAACAGCTGGCGGGGCTGCTCGCAGAC  250

seq1  ACTGCACCACAAGCATCTTGGTGCTCTTTGACAAAGCATGCAAGCCGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACCACAAGCATCTTGGTGCTCTTTGACAAAGCATGCAAGCCGGGC  300

seq1  AGTTTGCAAATGAAGTAAGGGAAGTCACGGGAGCGTGAGGGACAAATGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCAAATGAAGTAAGGGAAGTCACGGGAGCGTGAGGGACAAATGTC  350

seq1  TCTCATAGTCTTGCATGCTTGAACACTTGATGAACAACTGATGAAGGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATAGTCTTGCATGCTTGAACACTTGATGAACAACTGATGAAGGTGT  400

seq1  CAGAAGTCGTAGGGGGTGTGGCCTTGCTGGAGAAGTTTGTCACTGGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTCGTAGGGGGTGTGGCCTTGCTGGAGAAGTTTGTCACTGGGAGA  450

seq1  ACAGTGACAAGGTTTCAAAGCTTTGCACCACAGTACACCTGCCCCTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGACAAGGTTTCAAAGCTTTGCACCACAGTACACCTGCCCCTTCTA  500

seq1  TGCTGTGCTTCCAATCAAAATGGGATTTCTCAACTCCTGTTCCTGACGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGCTTCCAATCAAAATGGGATTTCTCAACTCCTGTTCCTGACGCC  550

seq1  ATCCTGCCACTGGCTGCCATCAGAGACTCTTTTTTTGTTGTTTTGTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGCCACTGGCTGCCATCAGAGACTCTTTTTTTGTTGTTTTGTTTTG  600

seq1  GTTTTTGGTTTTTCGAAACAGGGTTTCTCTGTGTAGCCCTGGCTATCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGGTTTTTCGAAACAGGGTTTCTCTGTGTAGCCCTGGCTATCCTG  650

seq1  GAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCC  700

seq1  TCTGCCTCCCAGGTGCTGGGATTAAAGGAGTGCGCCACCACACCTGGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAGGTGCTGGGATTAAAGGAGTGCGCCACCACACCTGGTTC  750

seq1  ATAGACTCTTTTAAAAAACGTTTTTTTTCCCTAGTTTTGAGATTTTTTTC  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATAGACTCTTTTAAAAAACGTTTTTTTT-CCTAGTTTTGAGATTTTTTTC  799

seq1  CTTCTTTTTTTAATGTGAGTGCCTGAATCTATCTCTATCTATCTATCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTTTTAATGTGAGTGCCTGAATCTATCTCTATCTATCTATCTAT  849

seq1  CTATCTATCTATCTATCTATCTATCTA-TCTATCTATCTA-TGTGTGTGC  898
      ||||||||||||||   |||||||||| |||||||||||| |||||||||
seq2  CTATCTATCTATCT---TATCTATCTATTCTATCTATCTATTGTGTGTGC  896

seq1  ACCAGCTCTGTAAAGGGCCTACAGAGGCCAGAAAAGGGCACTGGATCCCC  948
      ||||||||||||| |||| |||||||||||||||||||||||||||||| 
seq2  ACCAGCTCTGTAAGGGGCTTACAGAGGCCAGAAAAGGGCACTGGATCCCT  946

seq1  TGGGACTAGAACTGCAGATCCTTGTGATTCTCTATGTGGGGAT-ATCTGG  997
       |||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGGGACTAGAACTGCAGATCCTTGTGATTCTCTATGTGGGGATAATCTGG  996

seq1  AAGAGCAACCAATACTATGAACCACTGAGCTAATCACCATGCATTCTGAG  1047
       ||||||  | |||||||| |||||||||||||||||   ||||  ||||
seq2  -AGAGCA--CCATACTATGGACCACTGAGCTAATCACATGGCATCTTGAG  1043

seq1  ACTCTGAAAGTCTAATCCCCTGTATCTGCCTCCCCAGGGCTGGCGTTACT  1097
      |||||| ||| |||||||| |||| |||||||||   |||||||||||||
seq2  ACTCTGGAAG-CTAATCCCGTGTA-CTGCCTCCC--AGGCTGGCGTTACT  1089

seq1  GCTACCAGACTCT-TCTTCTTTCTTTTTATGTTTTTCAAGACAGAGTTCC  1146
      |||| ||||  || ||||||   | ||||||  || ||||||||| || |
seq2  GCTA-CAGAAACTATCTTCT---TCTTTATG--TTCCAAGACAGAATT-C  1132

seq1  TCTGT-GTAGGCCTCGC  1162
      ||||| |||||||||||
seq2  TCTGTGGTAGGCCTCGC  1149