BAC Information

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BAC

Clone NameB6Ng01-156P13
Chromosome4 (Build37)1 (Build37)
Map Location 112,063,661 - 112,064,82169,234,376 - 69,234,710
singlet/doubletsingletsinglet
Overlap geneA030013N09Rik
Upstream gene2310026E23Rik, Spata6, LOC621612, Slc5a9, LOC639774, C130057D23Rik, LOC639781, 9530098N22Rik, A430090E18Rik
Downstream geneLOC665949, LOC630887, OTTMUSG00000008540, LOC100040581, A030001H23Rik, LOC433745, LOC545668, LOC230622, LOC100040607
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-156P13.bB6Ng01-156P13.g
ACCDH951330DH951331
length1,146967
definitionDH951330|Mus musculus domesticus DNA, BAC clone: B6Ng01-156P13, 5' end.DH951331|Mus musculus domesticus DNA, BAC clone: B6Ng01-156P13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(112,063,661 - 112,064,821)(69,234,376 - 69,234,710)
sequence
gaattcattgaaacaagaaaagaaatgttgaatacaggcattgtcttgaa
ggtcttgatgctatatccatttgtttatttaagttatgtcagggctaaag
cctcataagaaatatttttagggttagcgttagtaagatacaacttagaa
tttggtgaaagtaagattatcgtcatttagtctgaaaatacaacagactt
aaaaacaatatcaaataataaatatcttctcccttttgttcacaactgtg
tagcacataatcagcctgaaaacatgatttggatgctgtgggaccctgtc
tccattcttaagtgcctaaaggttgtaggatccacagagaagggcttctg
tgaaactctgagctagctaaaagaaaaagaaactgccttcactcacacag
taaggaatactctgaaagaattctgagtccttgaaagaaatatcaactgg
agctatactccagccctgaagaaacacacaaggagggaggaaagggtagt
tccataacatgaggatctctgaagatcttgaaacttcctttcataaagag
tattgtgatgcactaacgttccgggttacacattttttgtatatatcaca
tctcaatattgtgtttcaagaagaaatggtttcagacctatttaccttcc
attactgtactcattagatttctgaaacaaacaggttttcttctgagaca
acaaaaaacaagtattcctctgagaaaattaagaaaaattatagtgatta
aatatattgaaggacatgaaaatttgtttgacatcaatgacatattctcc
gatttgaacagggcatctgaaagaaagagcaaaagacctggcgttattaa
ttgtatatacatttactagaacagattcatattataggctaagtccccat
atccaaccactgagaagtatttaagccacaaaaactttgactttgtcagt
agattgatctatcaatgaactcaaatttgatggcatgtctctaaggggga
aatggtaaaatgttagagtaaagttggttgataaaatagaggactatttc
tgaggattaatctgcttcctgtcaactcaatgcttttctggcatcttgtt
agttgttattgttaaaactgcagttaatttaggcacctaaaaagta
gaattcatgacaactaatgaaatggatctattaaagacagtcttccaaag
cagcacagctgccacacatacaaatgaactcttcatgacctacattattc
agaaaggactgtagtaacttgcactaaaatctgttactcacaaaagcttc
aaaccaaatcaaagcattactcagaagcttccaggatgcttcacatgggg
aatacaccacacagccacctttcctgaggctttcagctgctagtcagttt
atttctgcaacttgtgcttttctagccaattaaagtttccgacatgcgaa
tctccttttaaaatcatttaaaaagataagtaccattgtcttgatgccag
acttcatattttattgtttcagctccaacgaaaagagagattgctgagtg
gttctcttcattcccctttcttttttttttttctttttttttattttttt
gcactttcttttttttccaatttttaataggtatttagctcatttacatt
tccaatgctataccaaaagtcccccatacccacccaaccccactccccta
cccacccactccccctttttggccctggcgttcccctgtactggggcata
taaagtttgcaagtccaatgggcctctctttgcagtgatggacgactagg
ccatcttttgaaacatatgcagctagagtcatgatctccggggtactggt
tagtttcatattgttgttccacatatagggttgcagtttcctttagtttc
cttgggtgctttctatagttcctccattgggggccctgtggtccattcaa
tagctgactgtgagcatccatttctgtgtttgctaggccctggcattgtc
tcacaagagacagctataatctgggttctttcagcaaaatcttgctagtg
tatgcaatggtgtcagcgtttggaggctgatcatgggatgaatctctgga
tatggcatcactagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_112063661_112064821
seq2: B6Ng01-156P13.b_44_1189

seq1  GAATTCATTGAAACAAGAAAAGAAATGTTGAATACAGGCATTGTCTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAAACAAGAAAAGAAATGTTGAATACAGGCATTGTCTTGAA  50

seq1  GGTCTTGATGCTATATCCATTTGTTTATTTAAGTTATGTCAGGGCTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGATGCTATATCCATTTGTTTATTTAAGTTATGTCAGGGCTAAAG  100

seq1  CCTCATAAGAAATATTTTTAGGGTTAGCGTTAGTAAGATACAACTTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATAAGAAATATTTTTAGGGTTAGCGTTAGTAAGATACAACTTAGAA  150

seq1  TTTGGTGAAAGTAAGATTATCGTCATTTAGTCTGAAAATACAACAGACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGAAAGTAAGATTATCGTCATTTAGTCTGAAAATACAACAGACTT  200

seq1  AAAAACAATATCAAATAATAAATATCTTCTCCCTTTTGTTCACAACTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAATATCAAATAATAAATATCTTCTCCCTTTTGTTCACAACTGTG  250

seq1  TAGCACATAATCAGCCTGAAAACATGATTTGGATGCTGTGGGACCCTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACATAATCAGCCTGAAAACATGATTTGGATGCTGTGGGACCCTGTC  300

seq1  TCCATTCTTAAGTGCCTAAAGGTTGTAGGATCCACAGAGAAGGGCTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCTTAAGTGCCTAAAGGTTGTAGGATCCACAGAGAAGGGCTTCTG  350

seq1  TGAAACTCTGAGCTAGCTAAAAGAAAAAGAAACTGCCTTCACTCACACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTCTGAGCTAGCTAAAAGAAAAAGAAACTGCCTTCACTCACACAG  400

seq1  TAAGGAATACTCTGAAAGAATTCTGAGTCCTTGAAAGAAATATCAACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAATACTCTGAAAGAATTCTGAGTCCTTGAAAGAAATATCAACTGG  450

seq1  AGCTATACTCCAGCCCTGAAGAAACACACAAGGAGGGAGGAAAGGGTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATACTCCAGCCCTGAAGAAACACACAAGGAGGGAGGAAAGGGTAGT  500

seq1  TCCATAACATGAGGATCTCTGAAGATCTTGAAACTTCCTTTCATAAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAACATGAGGATCTCTGAAGATCTTGAAACTTCCTTTCATAAAGAG  550

seq1  TATTGTGATGCACTAACGTTCCGGGTTACACATTTTTTGTATATATCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGATGCACTAACGTTCCGGGTTACACATTTTTTGTATATATCACA  600

seq1  TCTCAATATTGTGTTTCAAGAAGAAATGGTTTCAGACCTATTTACCTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATATTGTGTTTCAAGAAGAAATGGTTTCAGACCTATTTACCTTCC  650

seq1  ATTACTGTACTCATTAGATTTCTGAAACAAACAGGTTTTCTTCTGAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGTACTCATTAGATTTCTGAAACAAACAGGTTTTCTTCTGAGACA  700

seq1  ACAAAAAACAAGTATTCCTCTGAGAAAATTAAGAAAAATTATAGTGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAACAAGTATTCCTCTGAGAAAATTAAGAAAAATTATAGTGATTA  750

seq1  AATATATTGAAGGACATGAAAATTTGTTTGACATCAATGACATATTCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTGAAGGACATGAAAATTTGTTTGACATCAATGACATATTCTCC  800

seq1  GATTTGAACAGGGCATCTGAAAGAAAGAGCAAAAGACCTGGCGTTATTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAACAGGGCATCTGAAAGAAAGAGCAAAAGACCTGGCGTTATTAA  850

seq1  TTGTATATACATTTACTAGAACAGATTCATATTATAGGCTAAGTCCCCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATATACATTTACTAGAACAGATTCATATTATAGGCTAAGTCCCCAT  900

seq1  ATCCAACCACTGAGAAGTATTTAAGCCACAAAAACTTTGACTTTGTCAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACCACTGAGAAGTATTTAAGCCACAAAAACTTTGACTTTGTCAGT  950

seq1  AGATTGATCTATCAATGAACTCAAATTTGATGGCATGTCTCTAAGGGGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGATTGATCTATCAATGAACTCAAATTTGATGGCATGTCTCTAAGGGGG-  999

seq1  AAATGGTAAAAATGTTAGGAAGTAAAGTTGGTTTGATAAAATAGAGGACA  1050
      ||||||| ||||||||||  ||||||||||| ||||||||||||||||| 
seq2  AAATGGT-AAAATGTTAG--AGTAAAGTTGG-TTGATAAAATAGAGGAC-  1044

seq1  TATTTCTGAAGGATATATCTTGCTCCTGTTCCAACTCCAATTGCTTTTTC  1100
      |||||||| |||||  ||||   ||||||  ||||||  | |||||||  
seq2  TATTTCTG-AGGATTAATCTGCTTCCTGT--CAACTC--AATGCTTTT--  1087

seq1  CTGGCCATCTTGTTAGTTGGTTATTGTTTAAAACTGCAGTT-ATTTAGGC  1149
      |||| ||||||||||||| ||||||| |||||||||||||| ||||||||
seq2  CTGG-CATCTTGTTAGTT-GTTATTG-TTAAAACTGCAGTTAATTTAGGC  1134

seq1  ACCTAAAAAGAA  1161
      |||||||||| |
seq2  ACCTAAAAAGTA  1146

seq1: chr1_69234376_69234710
seq2: B6Ng01-156P13.g_540_881 (reverse)

seq1  CACAGTCAG-AGGTCAATGGATCACAGGGCCCCCAATGGAGGAGCTAGAG  49
      |||||||||    | |||||| ||||||||||||||||||||| ||| ||
seq2  CACAGTCAGCTATTGAATGGACCACAGGGCCCCCAATGGAGGAACTATAG  50

seq1  AAAGTACCCAAGG-AGCTAAAGGGAACTGCAACCCTATAGGTGGAACAAC  98
      |||| |||||||| | ||||||| ||||||||||||||| ||||||||||
seq2  AAAGCACCCAAGGAAACTAAAGGAAACTGCAACCCTATATGTGGAACAAC  100

seq1  ATTATG-AACTAAACAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGT  147
      | |||| |||||| ||||||||||||| || |||||||||||||||||||
seq2  AATATGAAACTAACCAGTACCCCGGAGATCATGACTCTAGCTGCATATGT  150

seq1  ATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGAC  197
       ||||||||||||||||||| ||||||||| |||||||||||||||||||
seq2  TTCAAAAGATGGCCTAGTCGTCCATCACTGCAAAGAGAGGCCCATTGGAC  200

seq1  TTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGTCAAAAAGTG  247
      |||||||||||||||||||||||||||||||||||||||| ||||||| |
seq2  TTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGG  250

seq1  GGAGTGGGTGGGTAGGGGAGTGGG--TGAGAGGGTATGGGGGACTTTTGG  295
      ||||||||||||||||||||||||  || | |||||||||||||||||||
seq2  GGAGTGGGTGGGTAGGGGAGTGGGGTTGGGTGGGTATGGGGGACTTTTGG  300

seq1  GATAGCATTGGAAATGTAAATGAGGAAAATACCTA--AAAAA  335
       |||||||||||||||||||||||  |||||||||  |||||
seq2  TATAGCATTGGAAATGTAAATGAGCTAAATACCTATTAAAAA  342