BAC Information

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BAC

Clone NameB6Ng01-157B19
Chromosome4 (Build37)
Map Location 61,544,287 - 61,545,479
singlet/doubletsinglet
Overlap geneLOC667295
Upstream geneLOC100039008, LOC100039028, LOC620982, LOC100039054, LOC100039063, LOC667234, LOC100039089, LOC667239, LOC100039116, LOC667242, LOC100039150, LOC100039019, LOC100039177, LOC621093, LOC100039206, LOC621127, LOC100039228, LOC384021, LOC100039247, LOC667278, Mup5, LOC435785
Downstream geneLOC100039305, LOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231, Zfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157B19.bB6Ng01-157B19.g
ACCDH951436DH951437
length1,1661,130
definitionDH951436|Mus musculus domesticus DNA, BAC clone: B6Ng01-157B19, 5' end.DH951437|Mus musculus domesticus DNA, BAC clone: B6Ng01-157B19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttattttcccacatcaaacactagttaatgtttctagttccac
agtaaatgaaatgtcttactaatacaaaatatgttcccattgtaactgta
tatctttggaaacatgatttttagcatggtgtctacttgaacctccatca
gcaaatatgactttgtacaatacttgtatttttcattaatgatgagatta
tgtccagtcagttgaagtccaacattctcgaaggtaaacagttgatacaa
catggctactgagaacagtttggattctgaggtcagtgctgtctgtacaa
agttgaagcctttaggcggctatcagcttagccttggaacacttttcttg
atttttttttaaattaagatttactattttatgtgcatgtgaatgaatga
gtttatttgcatcacatgtgtagaggaggccagaggggtcaaaagaaagt
aggtgatttccttttactgaaattagtatcagttttaggatgccccgtga
gtgctggtaattgaacctgggttctcagcaaaaacaagtttcaaagaatc
tgactccttcttctgacctccactgtaccaggcctgtacatggtactcag
atacacatgcaaaaccagtgctcatacacatgaaatataaatgaatcttt
tgcagaaattgagtaactcaagttctcccatactcatcttaaagcaaaga
ttctgtgcatacttgaccttccagttcagtctgtactccctccaaaactg
gctttctgattccaaaccagatccaaagttgcatctggttccagttggca
gttctcttgaactcccattttcttgggattatgttttgagaaatgtaaga
ctactaaatcaatccataggtgatgaaattgccaagtttgcaaagggcaa
ggaacaatccttggcctctcatcataataataaaacattccacaagccta
atggaggtagaggagaccaatatgagagagaaaacaaaaacaaacaaaca
ctctgacccagagagtattaagacaagcaagatctgggggatggagtgta
gcaccatcacagaaagagtgggtcctgacagacgaacaatctaattctac
aatgaaatgctgtgctctgctagctctgctgctctggtttggaactgacc
attatctgtgtcatgc
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggtggatgattgctt
tactgtgttcttggattcggttagcgagaattttattgaggatttttgca
tcgatattcataagagaaattggtctgaagttctctatctttgttgggtc
tttctgtggtttaggtgtcagagtaatagtggcttcataaaatgagttgg
gtagagtaccttctacttctgttttgtgaaatagtttgtgcagaactgga
attagatcttctttgaaggtctgatagaactctgcactaaacccgtctgg
ttctgggcttttttcggctgggagactattaataactacttctatttctt
taggtgatatgggactgtttagatggtcaacttgatcctgactcaacttt
tgtacctggtatctgtccagaaatttgtccatttcgtccaggttttccag
ttttgttgagtatagccttttgtagaaggatctgatggtgttttggattt
ctacaggatctgttgttatgtctccctttttcactttctgattttgttaa
ttaggattttgtccctgtgccctttagtgagtctagctaagggtttatct
atcttgtttgattttctcaaagaaccaactcctcgtttggttaattcttt
tgaatagttcttcttgtttccactttggttgatttcaccccctgagtttg
attattttcctgccgcctacttctcttgggtgaatttgcttccttttttt
tctagagcttttaagattgtgtgtcagctgctagtatgtgctctctccgt
ttcttctgggaggtactcagaagctatgagtttcctctaagaaatgctat
cattgggtctcatacgtatggggacataggggcttcaattttcattatct
ctaaaaagtctttaatttctttcttatcctatcttgacaaggcattcatt
gagaagaagtgtcgttctcagcctcttgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_61544287_61545479
seq2: B6Ng01-157B19.b_46_1211 (reverse)

seq1  GCATGGACACAGACTATGGTCAGTTCCAAACACAGCAGCAGCAGCAGC-A  49
      |||| ||||||||  |||||||||||||||| ||| |||||||| ||| |
seq2  GCAT-GACACAGATAATGGTCAGTTCCAAAC-CAG-AGCAGCAG-AGCTA  46

seq1  GCAGCAGCACCAGCATTTTCATTTTGGTAGGGAATAGAATTGTCTGTCTG  99
      |||| |||| ||||| |||||||   |||  ||||   |||||  |||||
seq2  GCAG-AGCA-CAGCA-TTTCATT---GTA--GAATTAGATTGTTCGTCTG  88

seq1  TCAGGACCACATCTTTCTGGTGATGGTGCCTACACTCCACTCCCCAGATC  149
      ||||||||   ||||||| ||||||||| ||||||||||  |||||||||
seq2  TCAGGACCCACTCTTTCT-GTGATGGTG-CTACACTCCATCCCCCAGATC  136

seq1  CTTTGCTTGTCCTTATATACTCTCTGGGTTCAGAGGTGTTTTGTTTTGTT  199
        |||||||| |||| |||||||||||| ||||| ||||||   ||||||
seq2  --TTGCTTGT-CTTA-ATACTCTCTGGG-TCAGA-GTGTTT--GTTTGTT  178

seq1  TTTTGTTTTTCTCTTCTCATATTGGTCTCCTCTACCTCCATTAGGCTTTG  249
      |||   ||||||| |||||||||||||||||||||||||||||||| |||
seq2  TTT--GTTTTCTC-TCTCATATTGGTCTCCTCTACCTCCATTAGGC-TTG  224

seq1  TGGAATGTTTTATTATTTATTGATGAGAGGCCAAGGATTGTTCCTTGCCC  299
      |||||||||||||||||   ||||||||||||||||||||||||||||||
seq2  TGGAATGTTTTATTATT--ATGATGAGAGGCCAAGGATTGTTCCTTGCCC  272

seq1  TTTGCAAACTTGGCAATTTCATCACCTATGGATTGATTTAGTAGTCTTAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAACTTGGCAATTTCATCACCTATGGATTGATTTAGTAGTCTTAC  322

seq1  ATTTCTCAAAACATAATCCCAAGAAAATGGGAGTTCAAGAGAACTGCCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCAAAACATAATCCCAAGAAAATGGGAGTTCAAGAGAACTGCCAA  372

seq1  CTGGAACCAGATGCAACTTTGGATCTGGTTTGGAATCAGAAAGCCAGTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACCAGATGCAACTTTGGATCTGGTTTGGAATCAGAAAGCCAGTTT  422

seq1  TGGAGGGAGTACAGACTGAACTGGAAGGTCAAGTATGCACAGAATCTTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGAGTACAGACTGAACTGGAAGGTCAAGTATGCACAGAATCTTTG  472

seq1  CTTTAAGATGAGTATGGGAGAACTTGAGTTACTCAATTTCTGCAAAAGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGATGAGTATGGGAGAACTTGAGTTACTCAATTTCTGCAAAAGAT  522

seq1  TCATTTATATTTCATGTGTATGAGCACTGGTTTTGCATGTGTATCTGAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATATTTCATGTGTATGAGCACTGGTTTTGCATGTGTATCTGAGT  572

seq1  ACCATGTACAGGCCTGGTACAGTGGAGGTCAGAAGAAGGAGTCAGATTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTACAGGCCTGGTACAGTGGAGGTCAGAAGAAGGAGTCAGATTCT  622

seq1  TTGAAACTTGTTTTTGCTGAGAACCCAGGTTCAATTACCAGCACTCACGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTTGTTTTTGCTGAGAACCCAGGTTCAATTACCAGCACTCACGG  672

seq1  GGCATCCTAAAACTGATACTAATTTCAGTAAAAGGAAATCACCTACTTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCTAAAACTGATACTAATTTCAGTAAAAGGAAATCACCTACTTTC  722

seq1  TTTTGACCCCTCTGGCCTCCTCTACACATGTGATGCAAATAAACTCATTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACCCCTCTGGCCTCCTCTACACATGTGATGCAAATAAACTCATTC  772

seq1  ATTCACATGCACATAAAATAGTAAATCTTAATTTAAAAAAAAATCAAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACATGCACATAAAATAGTAAATCTTAATTTAAAAAAAAATCAAGAA  822

seq1  AAGTGTTCCAAGGCTAAGCTGATAGCCGCCTAAAGGCTTCAACTTTGTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTCCAAGGCTAAGCTGATAGCCGCCTAAAGGCTTCAACTTTGTAC  872

seq1  AGACAGCACTGACCTCAGAATCCAAACTGTTCTCAGTAGCCATGTTGTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCACTGACCTCAGAATCCAAACTGTTCTCAGTAGCCATGTTGTAT  922

seq1  CAACTGTTTACCTTCGAGAATGTTGGACTTCAACTGACTGGACATAATCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTTTACCTTCGAGAATGTTGGACTTCAACTGACTGGACATAATCT  972

seq1  CATCATTAATGAAAAATACAAGTATTGTACAAAGTCATATTTGCTGATGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTAATGAAAAATACAAGTATTGTACAAAGTCATATTTGCTGATGG  1022

seq1  AGGTTCAAGTAGACACCATGCTAAAAATCATGTTTCCAAAGATATACAGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCAAGTAGACACCATGCTAAAAATCATGTTTCCAAAGATATACAGT  1072

seq1  TACAATGGGAACATATTTTGTATTAGTAAGACATTTCATTTACTGTGGAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGGGAACATATTTTGTATTAGTAAGACATTTCATTTACTGTGGAA  1122

seq1  CTAGAAACATTAACTAGTGTTTGATGTGGGAAAATAAAGAATTC  1193
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAACATTAACTAGTGTTTGATGTGGGAAAATAAAGAATTC  1166