BAC Information

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BAC

Clone NameB6Ng01-157L09
Chromosome4 (Build37)
Map Location 79,685,734 - 79,810,895
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040026, LOC100040036, LOC667922
Downstream geneTyrp1, D4Bwg0951e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157L09.bB6Ng01-157L09.g
ACCDH951871DH951872
length1,1691,114
definitionDH951871|Mus musculus domesticus DNA, BAC clone: B6Ng01-157L09, 5' end.DH951872|Mus musculus domesticus DNA, BAC clone: B6Ng01-157L09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,809,663 - 79,810,895)(79,685,734 - 79,686,862)
sequence
gaattctcaacctcaggagaacattcatgctgacacttgataaaaaacaa
caacggtttactactagttactataacaatgcacaagtcacaaccttgtt
cacaccaacacagttcctggattgtatttaaactgattaaataaggcata
gtgcctatgttttaagaacatgtaaaggtactatctattaatgacttaga
agttaagtaaagccagaaaattggtgaattgaattaattatgtatataat
tttcatccaaatatttatagctccaataagttttatctgcccttctataa
atgaattaactctgaatattcttatcaattcccttaaacagaaaaatact
cccatgtaacattctaacaccacaatcaaccagaatatcttagaaaatgt
ttttgcttttaaaaaagtataacacacaaaaagaactcctaagctttatg
ctttatattttgtctctcaaagaatgggttcagatttataatagccatct
aaaaccacactacagtaagcttgggcccatgaaactattgtagtgagata
tgcagaataatagaaatatccattcttatatttcagtgactgctgcatca
gtcctgagcctgtatatatacagggatctcaaaggacaccacacaaaata
tgttattgcattcttaatatgcatttacttagttaagatgtattacaaca
ataatatttcgctgcatttcagcaaaaagttaatgacaacatagatgtaa
atatcagttttcaatatatttgcagtcacacactgtgagaaaagagcttt
cctcatagtagcaccaattttcgggttttatttgtcttatactatgaact
caataggacaggaacaggttttcttttatattatatttcaatcattgatt
atcacattattcacagaaaggcaacagaaatttattaaagcataactctc
taccaagttccacttaagtgggaatatctgttgagctgggaagcactgtg
gcctgatacacttctactactgtctcataagtgcaaaatattctctgaaa
gaaatgcttgctcagtttcagttatcccttcattttatttaggtatagct
gggggtgcttattccttcatttattagcaatgctggggggcctatcctca
ttattagccaattactggg
gaattcaaagatgtgaagcaaaaaaatttgctaatcaaagtgtaaaatat
acaatgtactgaaattatttattttattaaatcttagctcatatatatgt
atatatatatatatatttctatataacaaaatgagactacagcagttgct
tattttaaaagttgaatagctattaccctttaaattaatacttaagtgac
tattagttgtcaatttatttatcatcagtaacttcagaaatacctcaaat
atcttaaaatcactatccaactaaatattttaataagtaaagatgtttct
tcatatatttaatttttttaatcatataagaatgatgtaaaaatgtgtat
gtagttggtatttcttatgtcatacagaaaagttttttaatagaatgata
gtgctattctacttaagaagccactttttttctggaaagcataatctttt
ttaagaattgaaaatatgatccagacagtggttatgcatgactgtaatcc
catcaatagggaggaagggacaggagcatttctgaattcaaggccagctt
ggtcgaaagagtgacagctgagtcttttatatcattaaataaaggtaatt
ttataattcataaagttatgtaactttatgaaaagaggtaactttataca
aaaacaaaatctaagggggctatacataatttcaaggggtttggtatctg
aattgagtcaaagagtttaaatagtaaagatatggatgttatttctttaa
tctatgtgtatccacaggctattgtatacttgctagtgttaatttattta
ctaaaaatatcatgtaatcatgaggtaagaaataatatttctttaggcaa
atttggaatatctgcacatgtcagcccatgaagtttttttctcttttatt
cattgaaaaattgtatagatgactatttttaaagaacactggatactgaa
atcacctacactaaattaattaatactaaattattaagaattagtgttta
ctttaaatttactagtaaactttaataaaaaagattaatagtcaatgaaa
gattgtggaatttccactaatataacttctgactatgtataaatggctgg
aaaacagatataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_79809663_79810895
seq2: B6Ng01-157L09.b_48_1216 (reverse)

seq1  CCCAGCTAATTGGCTAAATAAAATGAAGGGATAAGCCCCCCCAGCTAATT  50
                                             ||||| |||||
seq2  ---------------------------------------CCCAG-TAATT  10

seq1  GGCTAAATAAAATGAAGGGATAAGCCCCCCCCCAGCTAATTGGCTAAATA  100
      |||||   | |||||  ||||| |   |||||||||  ||| |||||   
seq2  GGCTA---ATAATGA--GGATAGG---CCCCCCAGC--ATT-GCTAA--T  47

seq1  AAATGAAGGGATAAGCACCCCCCCAGCTAATTGGCTAAATAAAATGAAGG  150
      ||||||||| |||||||  ||||||||||  |  ||||||||||||||||
seq2  AAATGAAGGAATAAGCA--CCCCCAGCTA--TACCTAAATAAAATGAAGG  93

seq1  GATAACTGAATACCTGAGCAAGCATTTTCTTTCAGAGAATATTTTGCCAC  200
      |||||||||  | ||||||||||| ||||||||||||||||||||| |||
seq2  GATAACTGA--AACTGAGCAAGCA-TTTCTTTCAGAGAATATTTTG-CAC  139

seq1  TTATGAGACAGTAGTTAGAAGTGTAACCAGGCCACAGTTGGCTTCCCAGC  250
      |||||||||||||| ||||||||| | |||||||||||  ||||||||||
seq2  TTATGAGACAGTAG-TAGAAGTGT-ATCAGGCCACAGT--GCTTCCCAGC  185

seq1  TCAACAGATATTCCCACTTAAGTGGAACTTGGTAGAGAGTTATGCTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGATATTCCCACTTAAGTGGAACTTGGTAGAGAGTTATGCTTTAA  235

seq1  TAAATTTCTGTTGCCCTTCTGTGAATAATGTGATAATCAATGATTG-AAT  349
      ||||||||||||||| |||||||||||||||||||||||||||||| |||
seq2  TAAATTTCTGTTGCCTTTCTGTGAATAATGTGATAATCAATGATTGAAAT  285

seq1  ATAATATAAAAGAAAACCTGTTCCTGTCCTATTGAGTTCATAGTATAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATAAAAGAAAACCTGTTCCTGTCCTATTGAGTTCATAGTATAAGA  335

seq1  CAAATAAAACCCGAAAATTGGTGCTACTATGAGGAAAGCTCTTTTCCCAC  449
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAAATAAAACCCGAAAATTGGTGCTACTATGAGGAAAGCTCTTTTCTCAC  385

seq1  AGTGTGTGACTGCAAATATATTGAAAACTGATATTTACATCTATGTTGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGACTGCAAATATATTGAAAACTGATATTTACATCTATGTTGTC  435

seq1  ATTAACTTTTTGCTGAAATGCAGCGAAATATTATTGTTGTAATACATCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTTTTTGCTGAAATGCAGCGAAATATTATTGTTGTAATACATCTT  485

seq1  AACTAAGTAAATGCATATTAAGAATGCAATAACATATTTTGTGTGGTGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGTAAATGCATATTAAGAATGCAATAACATATTTTGTGTGGTGTC  535

seq1  CTTTGAGATCCCTGTATATATACAGGCTCAGGACTGATGCAGCAGTCACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGATCCCTGTATATATACAGGCTCAGGACTGATGCAGCAGTCACT  585

seq1  GAAATATAAGAATGGATATTTCTATTATTCTGCATATCTCACTACAATAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATAAGAATGGATATTTCTATTATTCTGCATATCTCACTACAATAG  635

seq1  TTTCATGGGCCCAAGCTTACTGTAGTGTGGTTTTAGATGGCTATTATAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGGCCCAAGCTTACTGTAGTGTGGTTTTAGATGGCTATTATAAA  685

seq1  TCTGAACCCATTCTTTGAGAGACAAAATATAAAGCATAAAGCTTAGGAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACCCATTCTTTGAGAGACAAAATATAAAGCATAAAGCTTAGGAGT  735

seq1  TCTTTTTGTGTGTTATACTTTTTTAAAAGCAAAAACATTTTCTAAGATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGTGTGTTATACTTTTTTAAAAGCAAAAACATTTTCTAAGATAT  785

seq1  TCTGGTTGATTGTGGTGTTAGAATGTTACATGGGAGTATTTTTCTGTTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTGATTGTGGTGTTAGAATGTTACATGGGAGTATTTTTCTGTTTA  835

seq1  AGGGAATTGATAAGAATATTCAGAGTTAATTCATTTATAGAAGGGCAGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATTGATAAGAATATTCAGAGTTAATTCATTTATAGAAGGGCAGAT  885

seq1  AAAACTTATTGGAGCTATAAATATTTGGATGAAAATTATATACATAATTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTATTGGAGCTATAAATATTTGGATGAAAATTATATACATAATTA  935

seq1  ATTCAATTCACCAATTTTCTGGCTTTACTTAACTTCTAAGTCATTAATAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATTCACCAATTTTCTGGCTTTACTTAACTTCTAAGTCATTAATAG  985

seq1  ATAGTACCTTTACATGTTCTTAAAACATAGGCACTATGCCTTATTTAATC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTACCTTTACATGTTCTTAAAACATAGGCACTATGCCTTATTTAATC  1035

seq1  AGTTTAAATACAATCCAGGAACTGTGTTGGTGTGAACAAGGTTGTGACTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAATACAATCCAGGAACTGTGTTGGTGTGAACAAGGTTGTGACTT  1085

seq1  GTGCATTGTTATAGTAACTAGTAGTAAACCGTTGTTGTTTTTTATCAAGT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTGTTATAGTAACTAGTAGTAAACCGTTGTTGTTTTTTATCAAGT  1135

seq1  GTCAGCATGAATGTTCTCCTGAGGTTGAGAATTC  1233
      ||||||||||||||||||||||||||||||||||
seq2  GTCAGCATGAATGTTCTCCTGAGGTTGAGAATTC  1169

seq1: chr4_79685734_79686862
seq2: B6Ng01-157L09.g_69_1182

seq1  GAATTCAAAGATGTGAAGCAAAAAAATTTGCTAATCAAAGTGTAAAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGATGTGAAGCAAAAAAATTTGCTAATCAAAGTGTAAAATAT  50

seq1  ACAATGTACTGAAATTATTTATTTTATTAAATCTTAGCTCATATATATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTACTGAAATTATTTATTTTATTAAATCTTAGCTCATATATATGT  100

seq1  ATATATATATATATATTTCTATATAACAAAATGAGACTACAGCAGTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATTTCTATATAACAAAATGAGACTACAGCAGTTGCT  150

seq1  TATTTTAAAAGTTGAATAGCTATTACCCTTTAAATTAATACTTAAGTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAAAGTTGAATAGCTATTACCCTTTAAATTAATACTTAAGTGAC  200

seq1  TATTAGTTGTCAATTTATTTATCATCAGTAACTTCAGAAATACCTCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTTGTCAATTTATTTATCATCAGTAACTTCAGAAATACCTCAAAT  250

seq1  ATCTTAAAATCACTATCCAACTAAATATTTTAATAAGTAAAGATGTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAAATCACTATCCAACTAAATATTTTAATAAGTAAAGATGTTTCT  300

seq1  TCATATATTTAATTTTTTTAATCATATAAGAATGATGTAAAAATGTGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATTTAATTTTTTTAATCATATAAGAATGATGTAAAAATGTGTAT  350

seq1  GTAGTTGGTATTTCTTATGTCATACAGAAAAGTTTTTTAATAGAATGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGGTATTTCTTATGTCATACAGAAAAGTTTTTTAATAGAATGATA  400

seq1  GTGCTATTCTACTTAAGAAGCCACTTTTTTTCTGGAAAGCATAATCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTATTCTACTTAAGAAGCCACTTTTTTTCTGGAAAGCATAATCTTTT  450

seq1  TTAAGAATTGAAAATATGATCCAGACAGTGGTTATGCATGACTGTAATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATTGAAAATATGATCCAGACAGTGGTTATGCATGACTGTAATCC  500

seq1  CATCAATAGGGAGGAAGGGACAGGAGCATTTCTGAATTCAAGGCCAGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATAGGGAGGAAGGGACAGGAGCATTTCTGAATTCAAGGCCAGCTT  550

seq1  GGTCGAAAGAGTGACAGCTGAGTCTTTTATATCATTAAATAAAGGTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGAAAGAGTGACAGCTGAGTCTTTTATATCATTAAATAAAGGTAATT  600

seq1  TTATAATTCATAAAGTTATGTAACTTTATGAAAAGAGGTAACTTTATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTCATAAAGTTATGTAACTTTATGAAAAGAGGTAACTTTATACA  650

seq1  AAAACAAAATCTAAGGGGGCTATACATAATTTCAAGGGGTTTGGTATCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAATCTAAGGGGGCTATACATAATTTCAAGGGGTTTGGTATCTG  700

seq1  AATTGAGTCAAAGAGTTTAAATAGTAAAGATATGGATGTTATTTCTTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGTCAAAGAGTTTAAATAGTAAAGATATGGATGTTATTTCTTTAA  750

seq1  TCTATGTGTATCCACAGGCTATTGTATACTTGCTAGTGTTAATTTATTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTGTATCCACAGGCTATTGTATACTTGCTAGTGTTAATTTATTTA  800

seq1  CTAAAAATATCATGTAATCAATGAGGTAAGAAATAATATTTCCTTTAGGC  850
      ||||||||||||||||||| ||||||||||||||||||||| ||||||||
seq2  CTAAAAATATCATGTAATC-ATGAGGTAAGAAATAATATTT-CTTTAGGC  848

seq1  AAAATTTGGAATATCTGCAACATGTCAGCCAATGAAGTTTTTTTCTCTTT  900
       ||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  -AAATTTGGAATATCTGC-ACATGTCAGCCCATGAAGTTTTTTTCTCTTT  896

seq1  TATTCATTGAAAAATTTGTATAGATGACCTATATTTTAAAGAACACTGGA  950
      |||||||||||||| |||||||||||| |||| |||||||||||||||||
seq2  TATTCATTGAAAAA-TTGTATAGATGA-CTAT-TTTTAAAGAACACTGGA  943

seq1  TACTGAAATCACCTACACTAAAATTAATTAATACTAAATTAATTAGTATT  1000
      ||||||||||||||||||| ||||||||||||||||||||| | || |||
seq2  TACTGAAATCACCTACACT-AAATTAATTAATACTAAATTATTAAGAATT  992

seq1  AGTGTCTATCTTTAATTTTACTAGTAAACTTTTAATAAAAAAGATTAATA  1050
      ||||| || |||||| ||||||||||||| ||||||||||||||||||||
seq2  AGTGTTTA-CTTTAAATTTACTAGTAAAC-TTTAATAAAAAAGATTAATA  1040

seq1  AGTTCATTGAAAGATTGTGGTATATTTTCCACATATATTAAACTTCTGAC  1100
         ||| |||||||||||||   | |||||||  ||||  ||||||||||
seq2  --GTCAATGAAAGATTGTGG---AATTTCCACTAATAT--AACTTCTGAC  1083

seq1  TATGTATAAATTGCT-GAAAACAGAT-TAAA  1129
      ||||||||||| ||| |||||||||| ||||
seq2  TATGTATAAATGGCTGGAAAACAGATATAAA  1114