BAC Information

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BAC

Clone NameB6Ng01-157N02
Chromosome4 (Build37)
Map Location 57,148,257 - 57,189,274
singlet/doubletdoublet
Overlap geneEpb4.1l4b
Upstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik, 6430704M03Rik
Downstream genePtpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049, Palm2, LOC100041513, Akap2, D630039A03Rik, Txn1, Txndc8, Svep1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157N02.bB6Ng01-157N02.g
ACCDH951945DH951946
length7821,201
definitionDH951945|Mus musculus domesticus DNA, BAC clone: B6Ng01-157N02, 5' end.DH951946|Mus musculus domesticus DNA, BAC clone: B6Ng01-157N02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,188,494 - 57,189,274)(57,148,257 - 57,149,488)
sequence
gaattcttgaaatttgttggtacacccgtggaagtaactcactctcaggg
cttccttctcttctccttctgatggagatggatatgtcagccattctgct
cctgtttgttgaacacaggatcacgcacaccacgccgctgtggctccggt
ggctaaccgaagagaaagacaaaactttacagacgtgcaatccccttgtg
aggcactggagctggctctgattccaactgcactgctgagagtcgggggc
tttggaaagtgacaggtgagccttaggcctttagcgtggcactcacgtga
ttgattcctggtgcctttatgagatgaaagaaagggaagaaaggatgaag
agagcaggggacggagggagcgagagaaagaggactcaatataagatgta
tggtagactcccctccgtttagtacttggtatcaagtactcccccatgat
ggatgtacatgtcccctacccactctttctaaggcagtagcttctagctg
tgcctggtcactgagcacatgaaataaagcatgactgacagattttttta
aaaatttaaatgttattcaatttaaacagccacgggagccccagtggctt
ccatgttgagcagcagcacaacagcagtgcccctgccctcgtctcaggca
gtgagaagactcttgtgagaacattaacgcagatggaaacaggcctatgg
ggtatgcggctgtcttgtgcctcctgggcagaaggatttggaaggccctt
ggctgttatgagtggggtgtggagaattgaag
gaattccaggacagccagggctatacagagaaaccctgtcttgagaaaca
aataacaaaccaaaacccaaaaccaacaaaaagaaaaagaaataaacaaa
ctgctctcagtctaccaaagatgtgacctcaggctggaagtctcaaatgg
ccttcaaaggcagaaattgtcataaggttctgaggtccccacacacctgt
gaatccctgggacaggctcagagccaatcacccaccccatgcccagatga
cctgccaaactgttctcagaccattttctccacagtctgtgcctgaagct
ggaccttgctagctgtgtggcttcgggcaagtttgctaacttgccagcta
agacttactcttcagctaagactgactctcctataaaactctggggaaac
agtctttgtaagcttcatagaattcctgagcacagatcctggatctcatg
tacttcaaaggtccctcacaagtcacacagtcagagtttacagccctcca
tacctgcccccaaggagcccaaagggtgaacgggctccctcctccccgct
cctatcctctatgcctttgcacctgctgcccagataccttctagcatgta
tcctttgggacagccccagccactacagcatcaaagcttttccaattcta
ccgcacagttcagtggcccctcccttgtactgcttcctatggggttacat
gtctttcactgactatgaactcaagaaagacacaaacacatacacacgcc
cccacacacacacacacacaccgccaacacactagaagagcttccacagg
ccttgttaactacagaaaatttgccttgcacagcaaaaacactttgaaaa
caatttttgtaaatagactttaaaatcaagtgaccaggtaagatgataca
gttagcttggagaggaatcacagagctgaagattacaaggctggagacac
tggagcggagggacacacaggcaggctccagtcccacaccctacagatca
gctttggctggaggcttttgcagcattaggactgtgcttctttctttttc
agttcatttctggtggcttggatctatgctcagatctgggattttctggt
tctggatgctcagctaactgttgtatttccttagtttacgaaagatttag
gctacctggcagttagacaaagacgcttaggagagaaggcttattttaat
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_57188494_57189274
seq2: B6Ng01-157N02.b_44_825 (reverse)

seq1  CTTCACTTCTCCACA-CCCACTCATTACAGCCAAGGGCCTTCCAAATCCT  49
      ||||| ||||||||| ||||||||| ||||||||||||||||||||||||
seq2  CTTCAATTCTCCACACCCCACTCATAACAGCCAAGGGCCTTCCAAATCCT  50

seq1  TCTGCCCAGGAGGCACAAGACAGCCGCATACCCCATAGGCCTGTTTCCAT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCAGGAGGCACAAGACAGCCGCATACCCCATAGGCCTGTTTCCAT  100

seq1  CTGCGTTAATGTTCTCACAAGAGTCTTCTCACTGCCTGAGACGAGGGCAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTTAATGTTCTCACAAGAGTCTTCTCACTGCCTGAGACGAGGGCAG  150

seq1  GGGCACTGCTGTTGTGCTGCTGCTCAACATGGAAGCCACTGGGGCTCCCG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACTGCTGTTGTGCTGCTGCTCAACATGGAAGCCACTGGGGCTCCCG  200

seq1  TGGCTGTTTAAATTGAATAACATTTAAATTTTTAAAAAAATCTGTCAGTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTTTAAATTGAATAACATTTAAATTTTTAAAAAAATCTGTCAGTC  250

seq1  ATGCTTTATTTCATGTGCTCAGTGACCAGGCACAGCTAGAAGCTACTGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTATTTCATGTGCTCAGTGACCAGGCACAGCTAGAAGCTACTGCC  300

seq1  TTAGAAAGAGTGGGTAGGGGACATGTACATCCATCATGGGGGAGTACTTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAGAGTGGGTAGGGGACATGTACATCCATCATGGGGGAGTACTTG  350

seq1  ATACCAAGTACTAAACGGAGGGGAGTCTACCATACATCTTATATTGAGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAGTACTAAACGGAGGGGAGTCTACCATACATCTTATATTGAGTC  400

seq1  CTCTTTCTCTCGCTCCCTCCGTCCCCTGCTCTCTTCATCCTTTCTTCCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTCTCGCTCCCTCCGTCCCCTGCTCTCTTCATCCTTTCTTCCCT  450

seq1  TTCTTTCATCTCATAAAGGCACCAGGAATCAATCACGTGAGTGCCACGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCATCTCATAAAGGCACCAGGAATCAATCACGTGAGTGCCACGCT  500

seq1  AAAGGCCTAAGGCTCACCTGTCACTTTCCAAAGCCCCCGACTCTCAGCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCTAAGGCTCACCTGTCACTTTCCAAAGCCCCCGACTCTCAGCAG  550

seq1  TGCAGTTGGAATCAGAGCCAGCTCCAGTGCCTCACAAGGGGATTGCACGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTGGAATCAGAGCCAGCTCCAGTGCCTCACAAGGGGATTGCACGT  600

seq1  CTGTAAAGTTTTGTCTTTCTCTTCGGTTAGCCACCGGAGCCACAGCGGCG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAGTTTTGTCTTTCTCTTCGGTTAGCCACCGGAGCCACAGCGGCG  650

seq1  TGGTGTGCGTGATCCTGTGTTCAACAAACAGGAGCAGAATGGCTGACATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGCGTGATCCTGTGTTCAACAAACAGGAGCAGAATGGCTGACATA  700

seq1  TCCATCTCCATCAGAAGGAGAAGAGAAGGAAGCCCTGAGAGTGAGTTACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTCCATCAGAAGGAGAAGAGAAGGAAGCCCTGAGAGTGAGTTACT  750

seq1  TCCACGGGTGTACCAACAAATTTCAAGAATTC  781
      ||||||||||||||||||||||||||||||||
seq2  TCCACGGGTGTACCAACAAATTTCAAGAATTC  782

seq1: chr4_57148257_57149488
seq2: B6Ng01-157N02.g_68_1268

seq1  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAGAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAGAAACA  50

seq1  AATAACAAACCAAAACCCAAAACCAACAAAAAGAAAAAGAAATAAACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAAACCAAAACCCAAAACCAACAAAAAGAAAAAGAAATAAACAAA  100

seq1  CTGCTCTCAGTCTACCAAAGATGTGACCTCAGGCTGGAAGTCTCAAATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTCAGTCTACCAAAGATGTGACCTCAGGCTGGAAGTCTCAAATGG  150

seq1  CCTTCAAAGGCAGAAATTGTCATAAGGTTCTGAGGTCCCCACACACCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAAAGGCAGAAATTGTCATAAGGTTCTGAGGTCCCCACACACCTGT  200

seq1  GAATCCCTGGGACAGGCTCAGAGCCAATCACCCACCCCATGCCCAGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCTGGGACAGGCTCAGAGCCAATCACCCACCCCATGCCCAGATGA  250

seq1  CCTGCCAAACTGTTCTCAGACCATTTTCTCCACAGTCTGTGCCTGAAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAAACTGTTCTCAGACCATTTTCTCCACAGTCTGTGCCTGAAGCT  300

seq1  GGACCTTGCTAGCTGTGTGGCTTCGGGCAAGTTTGCTAACTTGCCAGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTTGCTAGCTGTGTGGCTTCGGGCAAGTTTGCTAACTTGCCAGCTA  350

seq1  AGACTTACTCTTCAGCTAAGACTGACTCTCCTATAAAACTCTGGGGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTACTCTTCAGCTAAGACTGACTCTCCTATAAAACTCTGGGGAAAC  400

seq1  AGTCTTTGTAAGCTTCATAGAATTCCTGAGCACAGATCCTGGATCTCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTGTAAGCTTCATAGAATTCCTGAGCACAGATCCTGGATCTCATG  450

seq1  TACTTCAAAGGTCCCTCACAAGTCACACAGTCAGAGTTTACAGCCCTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAAAGGTCCCTCACAAGTCACACAGTCAGAGTTTACAGCCCTCCA  500

seq1  TACCTGCCCCCAAGGAGCCCAAAGGGTGAACGGGCTCCCTCCTCCCCGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGCCCCCAAGGAGCCCAAAGGGTGAACGGGCTCCCTCCTCCCCGCT  550

seq1  CCTATCCTCTATGCCTTTGCACCTGCTGCCCAGATACCTTCTAGCATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCCTCTATGCCTTTGCACCTGCTGCCCAGATACCTTCTAGCATGTA  600

seq1  TCCTTTGGGACAGCCCCAGCCACTACAGCATCAAAGCTTTTCCAATTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGGGACAGCCCCAGCCACTACAGCATCAAAGCTTTTCCAATTCTA  650

seq1  CCGCACAGTTCAGTGGCCCCTCCCTTGTACTGCTTCCTATGGGGTTACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCACAGTTCAGTGGCCCCTCCCTTGTACTGCTTCCTATGGGGTTACAT  700

seq1  GTCTTTCACTGACTATGAACTCAAGAAAGACACAAACACATACACACGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCACTGACTATGAACTCAAGAAAGACACAAACACATACACACGCC  750

seq1  CCCACACACACACACACACACCGCCAACACACTAGAAGAGCTTCCACAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACACACACACACACACCGCCAACACACTAGAAGAGCTTCCACAGG  800

seq1  CCTTGTTAACTACAGAAAATTTGCCTTGCACAAGCAAAAACACTTTGAAA  850
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  CCTTGTTAACTACAGAAAATTTGCCTTGCAC-AGCAAAAACACTTTG-AA  848

seq1  AACAATTTTTGTAAATAGACTTTAAAAATCAAGTGACCAGGTAAGATGAT  900
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AACAATTTTTGTAAATAGACTTT-AAAATCAAGTGACCAGGTAAGATGAT  897

seq1  ACAGTTAGC-TGGAGAGGAACCACAGAGGCTGAAGA-TACAAGGCTGGAG  948
      ||||||||| |||||||||| |||||| |||||||| |||||||||||||
seq2  ACAGTTAGCTTGGAGAGGAATCACAGA-GCTGAAGATTACAAGGCTGGAG  946

seq1  ACACTGGAGCGGAGGG-GACACAGGCAAGGCTCCAG-CCCACACCCCACA  996
      ||||||||||||||||  |||||||| ||||||||| ||||||||| |||
seq2  ACACTGGAGCGGAGGGACACACAGGC-AGGCTCCAGTCCCACACCCTACA  995

seq1  GATCAGCTTTGGCTGGAGGCTTTTGCAAGCATTAAGGACTGTGGCTTCTT  1046
      |||||||||||||||||||||||||| |||||| |||||||| |||||||
seq2  GATCAGCTTTGGCTGGAGGCTTTTGC-AGCATT-AGGACTGT-GCTTCTT  1042

seq1  TCCTTTCTCAGGTTCATTTCT-GTGGCCTGGATCTATGCTCAGGGTCCTG  1095
      | |||| ||| |||||||||| ||||| ||||||||||||||  |  |||
seq2  T-CTTTTTCA-GTTCATTTCTGGTGGCTTGGATCTATGCTCA--GATCTG  1088

seq1  GGATTATCCTGGGTCCTGGGAATGCTCCAAAGGCTAACTGTTGT-TATCC  1144
      ||||| ||   ||| ||||  ||||||     |||||||||||| | |||
seq2  GGATTTTC--TGGTTCTGG--ATGCTC----AGCTAACTGTTGTATTTCC  1130

seq1  TTAAGTTTTACCGGAGAGAGTTAGGGGCTTAGCTGGCAGGTTAAGAAACA  1194
      |||   |||||  || ||| |||||    || |||||| ||||       
seq2  TTA--GTTTAC--GAAAGATTTAGG---CTACCTGGCA-GTTA------G  1166

seq1  AAAAAGACAGCTTAGGAGAGAAAGGGTTTATTTTAATT  1232
      | |||||| |||||||||||||  || |||||||||||
seq2  ACAAAGAC-GCTTAGGAGAGAA--GGCTTATTTTAATT  1201