BAC Information

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BAC

Clone NameB6Ng01-158A19
Chromosome4 (Build37)
Map Location 142,249,866 - 142,492,127
singlet/doubletdoublet
Overlap geneLOC546484, 6330411D24Rik
Upstream geneDdi2, Agmat, Dnajc16, Casp9, Ela2a, Ctrc, Efhd2, Fhad1, Tmem51, 9030409G11Rik, EG665983
Downstream genePrdm2, LOC666018, EG626575, LOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158A19.bB6Ng01-158A19.g
ACCDH952113DH952114
length9771,015
definitionDH952113|Mus musculus domesticus DNA, BAC clone: B6Ng01-158A19, 5' end.DH952114|Mus musculus domesticus DNA, BAC clone: B6Ng01-158A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,249,866 - 142,250,842)(142,491,112 - 142,492,127)
sequence
gaattcacagagctgagaaaatgcaatctgtctgcaacagaggccatgaa
cgatctcagatggggcttcaagaaggatgctgagatgggccatttccggt
agtgagttagttcctcagaagagttattaacaagacaggctaacagtcag
ccagccagtcagacagacagacagcttgtctaacagcttgatggggattg
ggctctagcaccagatagcatcgcaggggctctggggggcgggggagaga
gagatcagggcccactaggcagacacagggtttgtttgcatagctttttg
gtgatagggaaagctttgcagcacagaacagtatcggatcctctgatccc
cacttaggaagtacctcacgtgggaagcaaggaagcagcagatgaagagc
tgggtacatgaccaccagtatctgctttggtgcaaactcaattcccaggt
aagggcccctggcacagcctgtgagctgggactctgtctgtgtctgtgtc
tgtgtctgtgtctgtgtctgtgtctgtgtctgtgtctgtgtctgtgtctg
tgtctgtgtccgtgtctgtctgcaggaggggtttgcaggtgtggccttgg
cagcagctggattctcacatcacgctcttacaggcttatgccgaggcact
taagccaggataattttcaatcttactcccttgagcagatccaggctgca
tagctttaatggaagggcatagttcctctgcctttatcatgggcgtttat
gactcagagtttcttccacacttgtaagggtatgttggaagggtgagatg
aggataatgctggctctgtttctcattttagattattttttaggaactca
agtatctcagacacagaaatcatcctcagtaatttcagttgggcagcgcc
aagctattatctgcaattttcttgttcaaatagtttggaaaacttctcat
gtgctaatgggatgaagctgctaggag
gaattctgtgatccattctcagagactcagaccctacagcctcagtggga
cctcggagtctgtttctttaaaaactccctgaccgcatttctattcattg
gcttccttctaaaacaaggatggagaggatgctgggagccaacctggacc
ataaagtgaccttggaagtggacacgaattaactctggaccatgaagccc
ctccctgccctttagccccaggcagctgggggctctgacccttgcacact
catcccgaaagagttcaggtgagctgtttgagatcatcatcacagccaag
gagaagctgctgagttcattcctcaggtgactttctccccatctttcttg
catcttggaatggaggtgacattagaagtaccaaatcctgatgaggatag
cagcaactggtccatctccactgtgaactgcattcagactcaccaaagag
acaaccttcttggtgtaaaagggagagcatccccaggcatgtctaaagat
ccaccctgattgtgggtggtaccaccccatggctgggtttctgggctaaa
taaaacaggtcacaggagaaagccccttgagagcaggcattctcctcttc
ctgctttctggtcccagcctgtgaacaagcagcttcaggaccctaccgct
atagctgtggtccatgccatgccctgccctcacaggacggctctgcatat
tattttgccttaggaatcacaaacaataaccactgtagcaagacgtcagg
ccagctggatgctaaccttgtttcatcatccattattgagtccatttcaa
agatggagaaatggaggcggaacatatagagtcccttgcccaaggccttc
caagcagcaaagggcaccatctcatctctgctgttgaatgctgcttctct
ctgagaggctctcccattctcttccagtagagtcattccatccttcctcc
agatcttggaagtcagccagccaggcacagagctattctcaagctattct
ctctcttctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_142249866_142250842
seq2: B6Ng01-158A19.b_41_1017

seq1  GAATTCACAGAGCTGAGAAAATGCAATCTGTCTGCAACAGAGGCCATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAGCTGAGAAAATGCAATCTGTCTGCAACAGAGGCCATGAA  50

seq1  CGATCTCAGATGGGGCTTCAAGAAGGATGCTGAGATGGGCCATTTCCGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCTCAGATGGGGCTTCAAGAAGGATGCTGAGATGGGCCATTTCCGGT  100

seq1  AGTGAGTTAGTTCCTCAGAAGAGTTATTAACAAGACAGGCTAACAGTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTTAGTTCCTCAGAAGAGTTATTAACAAGACAGGCTAACAGTCAG  150

seq1  CCAGCCAGTCAGACAGACAGACAGCTTGTCTAACAGCTTGATGGGGATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGTCAGACAGACAGACAGCTTGTCTAACAGCTTGATGGGGATTG  200

seq1  GGCTCTAGCACCAGATAGCATCGCAGGGGCTCTGGGGGGCGGGGGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTAGCACCAGATAGCATCGCAGGGGCTCTGGGGGGCGGGGGAGAGA  250

seq1  GAGATCAGGGCCCACTAGGCAGACACAGGGTTTGTTTGCATAGCTTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCAGGGCCCACTAGGCAGACACAGGGTTTGTTTGCATAGCTTTTTG  300

seq1  GTGATAGGGAAAGCTTTGCAGCACAGAACAGTATCGGATCCTCTGATCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAGGGAAAGCTTTGCAGCACAGAACAGTATCGGATCCTCTGATCCC  350

seq1  CACTTAGGAAGTACCTCACGTGGGAAGCAAGGAAGCAGCAGATGAAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGGAAGTACCTCACGTGGGAAGCAAGGAAGCAGCAGATGAAGAGC  400

seq1  TGGGTACATGACCACCAGTATCTGCTTTGGTGCAAACTCAATTCCCAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTACATGACCACCAGTATCTGCTTTGGTGCAAACTCAATTCCCAGGT  450

seq1  AAGGGCCCCTGGCACAGCCTGTGAGCTGGGACTCTGTCTGTGTCTGTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCCCTGGCACAGCCTGTGAGCTGGGACTCTGTCTGTGTCTGTGTC  500

seq1  TGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTG  550

seq1  TGTCTGTGTCCGTGTCTGTCTGCAGGAGGGGTTTGCAGGTGTGGCCTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGTCCGTGTCTGTCTGCAGGAGGGGTTTGCAGGTGTGGCCTTGG  600

seq1  CAGCAGCTGGATTCTCACATCACGCTCTTACAGGCTTATGCCGAGGCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCTGGATTCTCACATCACGCTCTTACAGGCTTATGCCGAGGCACT  650

seq1  TAAGCCAGGATAATTTTCAATCTTACTCCCTTGAGCAGATCCAGGCTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCAGGATAATTTTCAATCTTACTCCCTTGAGCAGATCCAGGCTGCA  700

seq1  TAGCTTTAATGGAAGGGCATAGTTCCCCTGCCTTTATCATGGGCGTTTAT  750
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAGCTTTAATGGAAGGGCATAGTTCCTCTGCCTTTATCATGGGCGTTTAT  750

seq1  GAC-CAGAGTTTTCTTCCACACTTGTAAGGGTATGTTGGAAGGGTGAGAT  799
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGAG-TTTCTTCCACACTTGTAAGGGTATGTTGGAAGGGTGAGAT  799

seq1  GAGGATAATGCTGGC-CTGTTTCTCAATTTTAGATTATTTTTCAGAAACT  848
      ||||||||||||||| ||||||||| |||||||||||||||| || ||||
seq2  GAGGATAATGCTGGCTCTGTTTCTC-ATTTTAGATTATTTTTTAGGAACT  848

seq1  CAAGTA-CACAGACACAGAAATCATCCTCAGTAATTTCAAGTTGGCAGCG  897
      |||||| | ||||||||||||||||||||||||||||||  | |||||||
seq2  CAAGTATCTCAGACACAGAAATCATCCTCAGTAATTTCAGTTGGGCAGCG  898

seq1  CCAAGCTAATTATCTGCAATTTCATCTGTCAAAATAGTTTGGAAAAC-TC  946
      ||||||| ||||||||||||||  | |||  |||||||||||||||| ||
seq2  CCAAGCT-ATTATCTGCAATTTTCT-TGTTCAAATAGTTTGGAAAACTTC  946

seq1  TCATGTGCTAATGGGATGAGGCTGCTAGGAG  977
      ||||||||||||||||||| |||||||||||
seq2  TCATGTGCTAATGGGATGAAGCTGCTAGGAG  977

seq1: chr4_142491112_142492127
seq2: B6Ng01-158A19.g_65_1079 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAATAGC-TGAGAATAGCTCTGTGCCTGGCTGG  49
      ||||||||| |||||||||||||| |||||||||||||||||||||||||
seq2  AGAGAGAGA-AGAGAGAGAATAGCTTGAGAATAGCTCTGTGCCTGGCTGG  49

seq1  CTGACTT-CAAGATCCTGGAGGAAGGATGGAATGACTCTACTGGAAGGGA  98
      ||||||| |||||| |||||||||||||||||||||||||||||||| ||
seq2  CTGACTTCCAAGAT-CTGGAGGAAGGATGGAATGACTCTACTGGAAGAGA  98

seq1  ATGGGAGAGCCTCTCAGAGAGAAGCAGCATTCAACAGCAGAGATGGGATG  148
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATGGGAGAGCCTCTCAGAGAGAAGCAGCATTCAACAGCAGAGATGAGATG  148

seq1  GTGCCCTTTGCTGCTTGGAAGGCCTTGGGCAAGGGACTCTATATGTTCCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTGCCCTTTGCTGCTTGGAAGGCCTTGGGCAAGGGACTCTATATGTT-CC  197

seq1  GCCTCCATTTCTCCATCTTTGAAATGGACTCAATAATGGATGATGAAACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCATTTCTCCATCTTTGAAATGGACTCAATAATGGATGATGAAACA  247

seq1  AGGTTAGCATCCAGCTGGCCTGACGTCTTGCTACAGTGGTTATTGTTTGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAGCATCCAGCTGGCCTGACGTCTTGCTACAGTGGTTATTGTTTGT  297

seq1  GATTCCTAAGGCAAAATAATATGCAGAGCCGTCCTGTGAGGGCAGGGCAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTAAGGCAAAATAATATGCAGAGCCGTCCTGTGAGGGCAGGGCAT  347

seq1  GGCATGGACCACAGCTATAGCGGTAGGGTCCTGAAGCTGCTTGTTCACAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGACCACAGCTATAGCGGTAGGGTCCTGAAGCTGCTTGTTCACAG  397

seq1  GCTGGGACCAGAAAGCAGGAAGAGGAGAATGCCTGCTCTCAAGGGGCTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGACCAGAAAGCAGGAAGAGGAGAATGCCTGCTCTCAAGGGGCTTT  447

seq1  CTCCTGTGACCTGTTTTATTTAGCCCAGAAACCCAGCCATGGGGTGGTAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTGACCTGTTTTATTTAGCCCAGAAACCCAGCCATGGGGTGGTAC  497

seq1  CACCCACAATCAGGGTGGATCTTTAGACATGCCTGGGGATGCTCTCCCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACAATCAGGGTGGATCTTTAGACATGCCTGGGGATGCTCTCCCTT  547

seq1  TTACACCAAGAAGGTTGTCTCTTTGGTGAGTCTGAATGCAGTTCACAGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACCAAGAAGGTTGTCTCTTTGGTGAGTCTGAATGCAGTTCACAGTG  597

seq1  GAGATGGACCAGTTGCTGCTATCCTCATCAGGATTTGGTACTTCTAATGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGACCAGTTGCTGCTATCCTCATCAGGATTTGGTACTTCTAATGT  647

seq1  CACCTCCATTCCAAGATGCAAGAAAGATGGGGAGAAAGTCACCTGAGGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCATTCCAAGATGCAAGAAAGATGGGGAGAAAGTCACCTGAGGAA  697

seq1  TGAACTCAGCAGCTTCTCCTTGGCTGTGATGATGATCTCAAACAGCTCAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAGCAGCTTCTCCTTGGCTGTGATGATGATCTCAAACAGCTCAC  747

seq1  CTGAACTCTTTCGGGATGAGTGTGCAAGGGTCAGAGCCCCCAGCTGCCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTCTTTCGGGATGAGTGTGCAAGGGTCAGAGCCCCCAGCTGCCTG  797

seq1  GGGCTAAAGGGCAGGGAGGGGCTTCATGGTCCAGAGTTAATTCGTGTCCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAAAGGGCAGGGAGGGGCTTCATGGTCCAGAGTTAATTCGTGTCCA  847

seq1  CTTCCAAGGTCACTTTATGGTCCAGGTTGGCTCCCAGCATCCTCTCCATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAGGTCACTTTATGGTCCAGGTTGGCTCCCAGCATCCTCTCCATC  897

seq1  CTTGTTTTAGAAGGAAGCCAATGAATAGAAATGCGGTCAGGGAGTTTTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTAGAAGGAAGCCAATGAATAGAAATGCGGTCAGGGAGTTTTTA  947

seq1  AAGAAACAGACTCCGAGGTCCCACTGAGGCTGTAGGGTCTGAGTCTCTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAGACTCCGAGGTCCCACTGAGGCTGTAGGGTCTGAGTCTCTGA  997

seq1  GAATGGATCACAGAATTC  1016
      ||||||||||||||||||
seq2  GAATGGATCACAGAATTC  1015