BAC Information

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BAC

Clone NameB6Ng01-158H19
Chromosome4 (Build37)
Map Location 63,021,547 - 63,145,098
singlet/doubletdoublet
Overlap geneOrm2, Akna, Whrn
Upstream geneFkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3, Zfp618, Ambp, Kif12, Col27a1, Orm1, Orm-ps, Orm3
Downstream geneAtp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158H19.bB6Ng01-158H19.g
ACCDH952423DH952424
length2681,084
definitionDH952423|Mus musculus domesticus DNA, BAC clone: B6Ng01-158H19, 5' end.DH952424|Mus musculus domesticus DNA, BAC clone: B6Ng01-158H19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,144,831 - 63,145,098)(63,021,547 - 63,022,651)
sequence
agttggaagcccgcagccctttcagccgagaaaggtcagcaagtagtgag
agctggagggccaggctaggacaagtctgaggggaaaatcaacccctccg
tgtgtctgctcctcagccaagacattgacattgatagaaacagacgtggt
gtgctctgcacattgatcccaggccataaaacactccattgcaaacccat
cgagactcagcttgggcaattgtatttatgattgctggagcattgtgtgt
gggggcggggagggggga
gaattcatgacaggccttgctcatctggcctctgcaggcaaaggacagga
gaagcaggggagacagatgtgagcagaagcctaggcagactctggaatga
tatgcagcaagtaccctgggggagaccttagctgggtgtccacttccctg
cctgcaccctcgccttagaaaccccaggctctggatacacagcacagcca
caggtagctttggggatatctaatcagtttcttaagttcattattttcca
tcatttgcttttataacaaaaatagatatttatatctgccagtgtgtgca
aatgtgtttatgtgcacgtgtacgtgtgcgcctgtgtgtaagagacatag
cagagacaaagaggcacaaacagagagattatgatatctggcgcactgct
aacttgggacagaacatatcattggtgcttttgggctcctcatggttatg
ctttttctcctctgggaagagataaactttcttaagactgtatagataca
acaaaacacatatgttttggggctccagctcagcaagttctcctaggccc
tgtacagcccactccacggcagggggctctcaggaccatctgtggcccct
tccttttgccctaggtgatcactgtcactaacttgattaatatcattaca
attagtctggagcctctagaacgccctgtaaacaggctcatacaacccca
cctctgggcgatctgctggcaataatgttgtcgagctgcatttgtatggt
caaatctatcagtcgttcatttctctctgttgctaagcaacaccatgctt
gcatgaaatgtcacaacccatttctcattttcctggtggtaggcacttaa
gagcttggggtttgtggctactttgaataatgccattagaaacatttata
cacatgatactggaggtgattcatgtcttgtttgtttcttttctgtggta
gactaatttttaaagcatatgttgctctatactatcagaggggaacataa
aatacaaatgccacagataaaagaggtctcatgaattaggacacagtagt
gatgacagttacttatcataacaaaaccctgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_63144831_63145098
seq2: B6Ng01-158H19.b_52_319 (reverse)

seq1  TCCCCCCTCCCCGCCCCCACACACAATGCTCCAGCAATCATAAATACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCTCCCCGCCCCCACACACAATGCTCCAGCAATCATAAATACAAT  50

seq1  TGCCCAAGCTGAGTCTCGATGGGTTTGCAATGGAGTGTTTTATGGCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAAGCTGAGTCTCGATGGGTTTGCAATGGAGTGTTTTATGGCCTGG  100

seq1  GATCAATGTGCAGAGCACACCACGTCTGTTTCTATCAATGTCAATGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATGTGCAGAGCACACCACGTCTGTTTCTATCAATGTCAATGTCTT  150

seq1  GGCTGAGGAGCAGACACACGGAGGGGTTGATTTTCCCCTCAGACTTGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGGAGCAGACACACGGAGGGGTTGATTTTCCCCTCAGACTTGTCC  200

seq1  TAGCCTGGCCCTCCAGCTCTCACTACTTGCTGACCTTTCTCGGCTGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGGCCCTCCAGCTCTCACTACTTGCTGACCTTTCTCGGCTGAAAG  250

seq1  GGCTGCGGGCTTCCAACT  268
      ||||||||||||||||||
seq2  GGCTGCGGGCTTCCAACT  268

seq1: chr4_63021547_63022651
seq2: B6Ng01-158H19.g_67_1150

seq1  GAATTCATGACAGGCCTTGCTCATCTGGCCTCTGCAGGCAAAGGACAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGACAGGCCTTGCTCATCTGGCCTCTGCAGGCAAAGGACAGGA  50

seq1  GAAGCAGGGGAGACAGATGTGAGCAGAAGCCTAGGCAGACTCTGGAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGGGAGACAGATGTGAGCAGAAGCCTAGGCAGACTCTGGAATGA  100

seq1  TATGCAGCAAGTACCCTGGGGGAGACCTTAGCTGGGTGTCCACTTCCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGCAAGTACCCTGGGGGAGACCTTAGCTGGGTGTCCACTTCCCTG  150

seq1  CCTGCACCCTCGCCTTAGAAACCCCAGGCTCTGGATACACAGCACAGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACCCTCGCCTTAGAAACCCCAGGCTCTGGATACACAGCACAGCCA  200

seq1  CAGGTAGCTTTGGGGATATCTAATCAGTTTCTTAAGTTCATTATTTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGCTTTGGGGATATCTAATCAGTTTCTTAAGTTCATTATTTTCCA  250

seq1  TCATTTGCTTTTATAACAAAAATAGATATTTATATCTGCCAGTGTGTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGCTTTTATAACAAAAATAGATATTTATATCTGCCAGTGTGTGCA  300

seq1  AATGTGTTTATGTGCACGTGTACGTGTGCGCCTGTGTGTAAGAGACATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTTTATGTGCACGTGTACGTGTGCGCCTGTGTGTAAGAGACATAG  350

seq1  CAGAGACAAAGAGGCACAAACAGAGAGATTATGATATCTGGCGCACTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAAAGAGGCACAAACAGAGAGATTATGATATCTGGCGCACTGCT  400

seq1  AACTTGGGACAGAACATATCATTGGTGCTTTTGGGCTCCTCATGGTTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGGACAGAACATATCATTGGTGCTTTTGGGCTCCTCATGGTTATG  450

seq1  CTTTTTCTCCTCTGGGAAGAGATAAACTTTCTTAAGACTGTATAGATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTCCTCTGGGAAGAGATAAACTTTCTTAAGACTGTATAGATACA  500

seq1  ACAAAACACATATGTTTTGGGGCTCCAGCTCAGCAAGTTCTCCTAGGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACACATATGTTTTGGGGCTCCAGCTCAGCAAGTTCTCCTAGGCCC  550

seq1  TGTACAGCCCACTCCACGGCAGGGGGCTCTCAGGACCATCTGTGGCCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGCCCACTCCACGGCAGGGGGCTCTCAGGACCATCTGTGGCCCCT  600

seq1  TCCTTTTGCCCTAGGTGATCACTGTCACTAACTTGATTAATATCATTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTGCCCTAGGTGATCACTGTCACTAACTTGATTAATATCATTACA  650

seq1  ATTAGTCTGGAGCCTCTAGAACGCCCTGTAAACAGGCTCATACAACCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTCTGGAGCCTCTAGAACGCCCTGTAAACAGGCTCATACAACCCCA  700

seq1  CCTCTGGGCGATCTGCTGGCAATAATGTTGTCGAGCTGCATTTGTATGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGGCGATCTGCTGGCAATAATGTTGTCGAGCTGCATTTGTATGGT  750

seq1  CAAATCTATCAGTCGTTCATTTCTCTCTGTTGCTAAGCAACACCATGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTATCAGTCGTTCATTTCTCTCTGTTGCTAAGCAACACCATGCTT  800

seq1  GCATGAAATGTCACAACCCATTTCTCATTTTCCTGGTGGTAGGCACTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAATGTCACAACCCATTTCTCATTTTCCTGGTGGTAGGCACTTAA  850

seq1  GAGCTTGGGGTTTGTGGCTACTTTGAATAATGCCATTAGAAACATTTATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTGGGGTTTGTGGCTACTTTGAATAATGCCATTAGAAACATTTATA  900

seq1  CACATGATACTGGAGGTGATTCATGTCTTGTTTTGTTTTCTTTTCTGTTG  950
      |||||||||||||||||||||||||||||||||   ||||||||||| ||
seq2  CACATGATACTGGAGGTGATTCATGTCTTGTTT--GTTTCTTTTCTG-TG  947

seq1  GTAGACTAATTTTTAAAGGCAATATGTTGCTCTAATACTTATCAAGAGGG  1000
      ||||||||||||||||||   |||||||||||| |||| |||| ||||||
seq2  GTAGACTAATTTTTAAAG--CATATGTTGCTCT-ATAC-TATC-AGAGGG  992

seq1  GAAACATAAAATACAAAATGCCACAGGATAAAAGAAGGTTCTCATGAAAT  1050
      | |||||||||||| |||||||||| |||||||||  | ||||||| |||
seq2  G-AACATAAAATAC-AAATGCCACA-GATAAAAGA--GGTCTCATG-AAT  1036

seq1  TAGAACACAGTAAGTGAATGACAAGTTACTTATCATTAAAACAAAAACCC  1100
      ||| ||||||| |||| ||||| |||||||||||||   ||| |||||||
seq2  TAGGACACAGT-AGTG-ATGAC-AGTTACTTATCAT---AAC-AAAACCC  1079

seq1  TGACT  1105
      |||||
seq2  TGACT  1084