BAC Information

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BAC

Clone NameB6Ng01-159A17
Chromosome4 (Build37)
Map Location 12,547,985 - 12,549,181
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
Downstream geneOTTMUSG00000004461, LOC100039988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159A17.bB6Ng01-159A17.g
ACCDH952827DH952828
length1,1831,086
definitionDH952827|Mus musculus domesticus DNA, BAC clone: B6Ng01-159A17, 5' end.DH952828|Mus musculus domesticus DNA, BAC clone: B6Ng01-159A17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcatctgtacaaattaatatttagaattaattaactccaatagc
agatatttctttagagattggcacaagattcaaaatgtatatggcataca
acataactaaaatatatcatataaaatatcatttattctagaaatgataa
agtcagaggaatttatgctactgtgattttattaaaaatctaggccaata
gactagtaaagcgcatcagaaagtttaaaaatcaggtttcaacaaaaata
ccaaagaagtttaaagagaaaaatattggtttccagaaatagtgttatga
aaactgggtgtttactatctatcatctatctacctatctatctatcaact
atttatctcatatatctatttgtccatcacctctctctgtctgtctttca
atctatctatatcactatgtgtcttgtctttctatacattcatctagact
tgtatcctgtatatgatactgcattcctcactgttctcctctctgtaatg
ggatacctgtccagcacagcctagaaggcatagtgtctggtttggctcac
tctggctggtatctgagtcagggtatgtgtatccatctttaaagaaagaa
acggcgctgtgtgtttagctacactagttcttgactcagtcagttctggt
gacttcaggcagtctgtttctaagatacaccaccgttttagagacatatc
tctcaagaggcatgcatttcttctggaaggagtatttgccagcatgtggg
cctatgctccaattccaatgtgcctgcagtgaggcacatgcacattctac
cacttttctgaagggaggcagcagacagtcagtagctgggataaagattt
ggataattagctttctcagttccctagaagcatgacaatttgtgtaccat
gtcacacgaataaatcgacttgccctggatactacagctcactgtctcga
actcaccccatcctagcatgttggcatattgtaagtgccccagtgctgta
gccctggagaaagaaataaaattctcctccttgaagtttaatcagccacc
tcgcacattcttcaggtaaagtctctggattctcaattcagctggctcag
acctgttctgagaagctgagttataagacatcattgtaactgacatatgt
tgcatgggggtgaaagatgccatagacagtgat
gaattcagaactcttcagctggggaacaggggtaccagtgagtacagctt
tacaaggtaagtctggtcttgaactttctaacgaaattcaagacagtcta
tcagaagtaaagtgggaaatagctttacaaggtatgtttggccttgaact
ttttttagtgttaggagcctttttgttccttttcacatgttatcaagtgg
ttaaggtagggctgaaaattctggatgaaattcagggcaatctatcagaa
gtaaagcggggagagagagtaggagcaaagaggaaatatggtacacaaaa
taagtatacaggcctttccaagggtcttgaacccgaggaaaagtttaggt
caggtaagaatacctggggagagattagaaggaaggaaaagaaaaaagat
caatcagcggaggtttctaggagaaggagcctatactcatcactagatga
gctcaaggagccagctcttggtagctctgaatcagatgatgaattctccc
ctgaagaaacagactgggaggaagaagcagctcattatgagggaaaaggg
taccagccagataaagtgctagctaatcagttaagaaaaaaagccaaaag
cggctggcgaaggccagtttgctgcttggcctccgggcagtcggcttcaa
ggtgcacttccgctctatgcggagcccccgccctgcgtagtgcgtcagcc
ctgcgcagagagacaatgcgcagagaggcaatgcgtagactcattcattc
ccagagaggaacaaagaaaaatacaacaggcatttccggtctttgaagga
gccgagggtgggcgtgtccacgctccggtagaatatgtgcagattaaaga
gcttgccgagtcggtccgtaaatatggaaccaatgctaatttaccttggt
gcagttagacaggcttgccggcatgcactactcctgccgactggcaatga
tgtaagccgctctcccctagtatggccaatatatgaatggagagctttat
gccagagctgccaagccaggcccagcaaccactgcttgaatccgagcaaa
agatggacctttgtctgttacggtcaggagcctatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_12547985_12549181
seq2: B6Ng01-159A17.b_44_1226 (reverse)

seq1  ATCATCTGTCTAATGCATCTCTTCACCCCCACTGCAACAATATGTCAGTT  50
      |||| |||||||  |||||| |||||||||| |||||| |||||||||||
seq2  ATCA-CTGTCTATGGCATCT-TTCACCCCCA-TGCAAC-ATATGTCAGTT  46

seq1  ACAATAGATGTCTAATAAACTCAGACTTCTCAGGACAGGGTGCTGAGCAT  100
      ||||| ||||||| || ||||||| |||||||| |||||   ||||||  
seq2  ACAAT-GATGTCTTAT-AACTCAG-CTTCTCAGAACAGG--TCTGAGCCA  91

seq1  GCTGAAATGGGAGATCAGAGACTTTACCTGAAGAATGGTGCGAGGTGGCT  150
      |||||| || ||   ||||||||||||||||||||| |||||||||||||
seq2  GCTGAATTGAGAATCCAGAGACTTTACCTGAAGAAT-GTGCGAGGTGGCT  140

seq1  GATTAAAACTTCAAGGA-GAGAATTTTTATTTCTATCTCCAGGGCTACAG  199
      |||| |||||||||||| ||||| |||||||||| |||||||||||||||
seq2  GATT-AAACTTCAAGGAGGAGAA-TTTTATTTCTTTCTCCAGGGCTACAG  188

seq1  CACTGGGGGCACTTACAATATGCCAACATGCTAGGATGGGGTGAGTTTCG  249
      |||| |||||||||||||||||||||||||||||||||||||||| ||||
seq2  CACT-GGGGCACTTACAATATGCCAACATGCTAGGATGGGGTGAG-TTCG  236

seq1  AGACAGTGAGCTGTAGTATCCAGGGCAAGTCGATTTTATTCGTGTGACAT  299
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGACAGTGAGCTGTAGTATCCAGGGCAAGTCGA-TTTATTCGTGTGACAT  285

seq1  GGTACACAAATTGTCATGCTTCTAGGGAACTGAGAAAGCTAATTATCCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACACAAATTGTCATGCTTCTAGGGAACTGAGAAAGCTAATTATCCAA  335

seq1  ATCTTTATCCCAGCTACTGACTGTCTGCTGCCTCCCTTCAGAAAAGTGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATCCCAGCTACTGACTGTCTGCTGCCTCCCTTCAGAAAAGTGGT  385

seq1  AGAATGTGCATGTGCCTCACTGCAGGCACATTGGAATTGGAGCATAGGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTGCATGTGCCTCACTGCAGGCACATTGGAATTGGAGCATAGGCC  435

seq1  CACATGCTGGCAAATACTCCTTCCAGAAGAAATGCATGCCTCTTGAGAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCTGGCAAATACTCCTTCCAGAAGAAATGCATGCCTCTTGAGAGA  485

seq1  TATGTCTCTAAAACGGTGGTGTATCTTAGAAACAGACTGCCTGAAGTCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTCTAAAACGGTGGTGTATCTTAGAAACAGACTGCCTGAAGTCAC  535

seq1  CAGAACTGACTGAGTCAAGAACTAGTGTAGCTAAACACACAGCGCCGTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTGACTGAGTCAAGAACTAGTGTAGCTAAACACACAGCGCCGTTT  585

seq1  CTTTCTTTAAAGATGGATACACATACCCTGACTCAGATACCAGCCAGAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTAAAGATGGATACACATACCCTGACTCAGATACCAGCCAGAGT  635

seq1  GAGCCAAACCAGACACTATGCCTTCTAGGCTGTGCTGGACAGGTATCCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAACCAGACACTATGCCTTCTAGGCTGTGCTGGACAGGTATCCCA  685

seq1  TTACAGAGAGGAGAACAGTGAGGAATGCAGTATCATATACAGGATACAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAGAGGAGAACAGTGAGGAATGCAGTATCATATACAGGATACAAG  735

seq1  TCTAGATGAATGTATAGAAAGACAAGACACATAGTGATATAGATAGATTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATGAATGTATAGAAAGACAAGACACATAGTGATATAGATAGATTG  785

seq1  AAAGACAGACAGAGAGAGGTGATGGACAAATAGATATATGAGATAAATAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAGACAGAGAGAGGTGATGGACAAATAGATATATGAGATAAATAG  835

seq1  TTGATAGATAGATAGGTAGATAGATGATAGATAGTAAACACCCAGTTTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGATAGATAGGTAGATAGATGATAGATAGTAAACACCCAGTTTTC  885

seq1  ATAACACTATTTCTGGAAACCAATATTTTTCTCTTTAAACTTCTTTGGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACTATTTCTGGAAACCAATATTTTTCTCTTTAAACTTCTTTGGTA  935

seq1  TTTTTGTTGAAACCTGATTTTTAAACTTTCTGATGCGCTTTACTAGTCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTGAAACCTGATTTTTAAACTTTCTGATGCGCTTTACTAGTCTA  985

seq1  TTGGCCTAGATTTTTAATAAAATCACAGTAGCATAAATTCCTCTGACTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTAGATTTTTAATAAAATCACAGTAGCATAAATTCCTCTGACTTT  1035

seq1  ATCATTTCTAGAATAAATGATATTTTATATGATATATTTTAGTTATGTTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTCTAGAATAAATGATATTTTATATGATATATTTTAGTTATGTTG  1085

seq1  TATGCCATATACATTTTGAATCTTGTGCCAATCTCTAAAGAAATATCTGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCATATACATTTTGAATCTTGTGCCAATCTCTAAAGAAATATCTGC  1135

seq1  TATTGGAGTTAATTAATTCTAAATATTAATTTGTACAGATGAGAATTC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGAGTTAATTAATTCTAAATATTAATTTGTACAGATGAGAATTC  1183