BAC Information

Click to search

BAC

Clone NameB6Ng01-159B11
Chromosome4 (Build37)
Map Location 66,707,937 - 66,806,879
singlet/doubletdoublet
Overlap genenone
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneLOC100039379, Hmgb1-rs18, LOC433715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159B11.bB6Ng01-159B11.g
ACCDH952859DH952860
length1,1221,076
definitionDH952859|Mus musculus domesticus DNA, BAC clone: B6Ng01-159B11, 5' end.DH952860|Mus musculus domesticus DNA, BAC clone: B6Ng01-159B11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,805,725 - 66,806,879)(66,707,937 - 66,709,017)
sequence
gaattctgtaagttcagaagttctagccccatcagtcaaaaaggaagtaa
gcaggacatttctttcaaagtataaaatattccagaaacactcttttgaa
gtattctaatcatctatctcgcttgatcagaataagtccaatccattctc
tgtgttttcctgaatttttaccagcttcctacctaatattctgaattttc
attaaacttggttgcctaattgtatagacacagcagttatgctaacacaa
gaaagcaggtttctttcttcttaaatttcgttctttccattcctatgcta
agcaaagaaaatgagtctttagatcaatgtaaagatcattatgaattcct
tgcatttaactttttagtgggatttcacaatatttcaggattttagaata
gtaatcagacctatcacgttagacaaatgctacataatttgtccacttct
tgcctctaggaaggaggacaaatatttaagaatgaaataagactgatagt
cacatgaatctaaaaaaaatggcttaaatctttaaactgatttccatggc
tcttgcgcagcagttattattgtagattcctgtgtcaaaatactgtgcca
gtttgaatctcaaagactattttatgttttcttattttattagtatcaat
ttatatgaaacttgagaatattgattgctagttttgatatccttggggtt
atgagaatataatatagcttcacaaaagctcaagtgcatggttgcttaaa
caaggtcctaacaaaagttggcatactagtgtgcttatggggattctcaa
ccagctctttctctaatgaagagcttcaagtaatatacgactaataataa
gggtagaattattttttttccagggatgaactctctaataggctatccta
taccaagttgttagtgtgaaagaaaaaaaaaagataaaatagaaaacaca
ctagactcataggtgtatttgctgctctttatatagtgtaatattacata
tatttataagaacgtgagtttgagatgagagtatgaggatcgatgaagga
gaacttatggatgtgttaaatatatgcactgtgagtttgttagtcttatt
ttgcttgcaatcagtaattctc
gaattctctggatgcgtgtggtggacaaattcctacacaatattctttaa
cattcacagtacatgccttaactcacaaacaaataagaatataataaaat
taaaaacatataagtcttaatttttgaataagatgtttttatattgataa
agcaaatttactattttattatctggaattgctataaaaacaatcactag
atcaaaagtgctttatatagatgcttattcaacaaatatttaataatatt
ccaggaaattaaggtaacataatgacaaaaatatagataatcagaaaagg
ggtaaataaaaagttaatctaaactgttagggagtctatcaatacattgg
tggaatttttatattaacattttccaatctatagcatcaagtgaagggct
ttattaactcaaaaggtgaatgcaatttaatccaacaagtgtttgtttct
tgttcccgcacacactcattaagtggtggagatttgaggtggaggatctc
caatgtggcatcatttataaaccacatctggggtaggatgtaatcttcag
tcctttgccatgcatggcgtgcatgattagcctaaaggaggcactgggca
acaacaccgaacattagatcatgcctgacatgttgtgggcaggccaagag
aaaccagccttcaatcacatggcctcatttaagcaaaggtaataagggag
atgtaattttgccatgtgcctgaaagggaaatgaaacaagcttggcaaac
tcacagattgcctctatcataagaaccaaatgagataaagtacctggcat
accgcctggcacataatagaccttcaagaaatgctatctatggctagcat
ggggattctaatttgttagaatataatgtgctttgactggataggtattt
atggatgagacattttgttttgtgtcaacccatttgactatagatagcat
cacgcactgcacatgcattaccttttattgtttatgaagctctagaaatg
atttcagtttacttttaattttgcctatatttttgagtaggtacataata
ttcctctcttttatatgatggaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_66805725_66806879
seq2: B6Ng01-159B11.b_48_1169 (reverse)

seq1  GAGAATTTTCCCTGATTTGTGCAGGCAAAATAAGACATAACCAAAACCTC  50
      |||||||    |||||   |||| |||||||||||| ||||   || |||
seq2  GAGAATT---ACTGAT---TGCAAGCAAAATAAGAC-TAAC---AAACTC  40

seq1  AACAAGTTGCACTATATTTTACACATACCATAGTTTCTCCTTTCCATCTG  100
       |||   |||| ||||||| |||||| |||||  ||||||||  |||| |
seq2  -ACA--GTGCA-TATATTTAACACAT-CCATAAGTTCTCCTT--CATC-G  82

seq1  ATCCCTCCAATACCTTCTTCCATCTCAAACTCACGTTTCTTTATTAAATA  150
      || ||||  ||||  |||  ||||||||||||||| |||||   ||||||
seq2  AT-CCTC--ATAC--TCT--CATCTCAAACTCACG-TTCTT--ATAAATA  122

seq1  TTATGTAATATTTACACTATATAAAGAGCAGCAAATACAACCTATTGAGT  200
       ||||||||| ||||||||||||||||||||||||||| ||||| |||||
seq2  -TATGTAATA-TTACACTATATAAAGAGCAGCAAATAC-ACCTA-TGAGT  168

seq1  CTAGTGTTGTTTTCTATTTTATCTTTTTTTTTTTCTTTTCACACTAACAA  250
      |||||| ||||||||||||||||||||||||||   ||||||||||||||
seq2  CTAGTG-TGTTTTCTATTTTATCTTTTTTTTTT--CTTTCACACTAACAA  215

seq1  CTTGGTATAGGATAGCCTATTAG-GGGTTCATCCCTGG-AAAAGAATAAT  298
      ||||||||||||||||||||||| | |||||||||||| |||| ||||||
seq2  CTTGGTATAGGATAGCCTATTAGAGAGTTCATCCCTGGAAAAAAAATAAT  265

seq1  TCTACCCTTATTATTAGTCGTATATTACTTGAAGCTCTTCATTTAGGGAA  348
      |||||||||||||||||||||||||||||||||||||||||||   | ||
seq2  TCTACCCTTATTATTAGTCGTATATTACTTGAAGCTCTTCATTAGAGAAA  315

seq1  GGGCTGGTTGAGAATCCCCATAAGCACACTGGTATGCCAACTTTTGTTAG  398
      | |||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAGCTGGTTGAGAATCCCCATAAGCACACTAGTATGCCAACTTTTGTTAG  365

seq1  GACCTTGTTTAAGCAACCATGCACTTGAGCTTTTGTGAAGCTATATTATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGTTTAAGCAACCATGCACTTGAGCTTTTGTGAAGCTATATTATA  415

seq1  TTCTCATAACCCCAAGGATATCAAAACTAGCAATCAATATTCTCAAGTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATAACCCCAAGGATATCAAAACTAGCAATCAATATTCTCAAGTTT  465

seq1  CATATAAATTGATACTAATAAAATAAGAAAACATAAAATAGTCTTTGAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAATTGATACTAATAAAATAAGAAAACATAAAATAGTCTTTGAGA  515

seq1  TTCAAACTGGCACAGTATTTTGACACAGGAATCTACAATAATAACTGCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTGGCACAGTATTTTGACACAGGAATCTACAATAATAACTGCTG  565

seq1  CGCAAGAGCCATGGAAATCAGTTTAAAGATTTAAGCCATTTTTTTTAGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAGAGCCATGGAAATCAGTTTAAAGATTTAAGCCATTTTTTTTAGAT  615

seq1  TCATGTGACTATCAGTCTTATTTCATTCTTAAATATTTGTCCTCCTTCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGACTATCAGTCTTATTTCATTCTTAAATATTTGTCCTCCTTCCT  665

seq1  AGAGGCAAGAAGTGGACAAATTATGTAGCATTTGTCTAACGTGATAGGTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAAGAAGTGGACAAATTATGTAGCATTTGTCTAACGTGATAGGTC  715

seq1  TGATTACTATTCTAAAATCCTGAAATATTGTGAAATCCCACTAAAAAGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACTATTCTAAAATCCTGAAATATTGTGAAATCCCACTAAAAAGTT  765

seq1  AAATGCAAGGAATTCATAATGATCTTTACATTGATCTAAAGACTCATTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAAGGAATTCATAATGATCTTTACATTGATCTAAAGACTCATTTT  815

seq1  CTTTGCTTAGCATAGGAATGGAAAGAACGAAATTTAAGAAGAAAGAAACC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTAGCATAGGAATGGAAAGAACGAAATTTAAGAAGAAAGAAACC  865

seq1  TGCTTTCTTGTGTTAGCATAACTGCTGTGTCTATACAATTAGGCAACCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTTGTGTTAGCATAACTGCTGTGTCTATACAATTAGGCAACCAA  915

seq1  GTTTAATGAAAATTCAGAATATTAGGTAGGAAGCTGGTAAAAATTCAGGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATGAAAATTCAGAATATTAGGTAGGAAGCTGGTAAAAATTCAGGA  965

seq1  AAACACAGAGAATGGATTGGACTTATTCTGATCAAGCGAGATAGATGATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGAGAATGGATTGGACTTATTCTGATCAAGCGAGATAGATGATT  1015

seq1  AGAATACTTCAAAAGAGTGTTTCTGGAATATTTTATACTTTGAAAGAAAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACTTCAAAAGAGTGTTTCTGGAATATTTTATACTTTGAAAGAAAT  1065

seq1  GTCCTGCTTACTTCCTTTTTGACTGATGGGGCTAGAACTTCTGAACTTAC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCTTACTTCCTTTTTGACTGATGGGGCTAGAACTTCTGAACTTAC  1115

seq1  AGAATTC  1155
      |||||||
seq2  AGAATTC  1122

seq1: chr4_66707937_66709017
seq2: B6Ng01-159B11.g_68_1143

seq1  GAATTCTCTGGATGCGTGTGGTGGACAAATTCCTACACAATATTCTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGATGCGTGTGGTGGACAAATTCCTACACAATATTCTTTAA  50

seq1  CATTCACAGTACATGCCTTAACTCACAAACAAATAAGAATATAATAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACAGTACATGCCTTAACTCACAAACAAATAAGAATATAATAAAAT  100

seq1  TAAAAACATATAAGTCTTAATTTTTGAATAAGATGTTTTTATATTGATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACATATAAGTCTTAATTTTTGAATAAGATGTTTTTATATTGATAA  150

seq1  AGCAAATTTACTATTTTATTATCTGGAATTGCTATAAAAACAATCACTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATTTACTATTTTATTATCTGGAATTGCTATAAAAACAATCACTAG  200

seq1  ATCAAAAGTGCTTTATATAGATGCTTATTCAACAAATATTTAATAATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAGTGCTTTATATAGATGCTTATTCAACAAATATTTAATAATATT  250

seq1  CCAGGAAATTAAGGTAACATAATGACAAAAATATAGATAATCAGAAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAATTAAGGTAACATAATGACAAAAATATAGATAATCAGAAAAGG  300

seq1  GGTAAATAAAAAGTTAATCTAAACTGTTAGGGAGTCTATCAATACATTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATAAAAAGTTAATCTAAACTGTTAGGGAGTCTATCAATACATTGG  350

seq1  TGGAATTTTTATATTAACATTTTCCAATCTATAGCATCAAGTGAAGGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTTTATATTAACATTTTCCAATCTATAGCATCAAGTGAAGGGCT  400

seq1  TTATTAACTCAAAAGGTGAATGCAATTTAATCCAACAAGTGTTTGTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAACTCAAAAGGTGAATGCAATTTAATCCAACAAGTGTTTGTTTCT  450

seq1  TGTTCCCGCACACACTCATTAAGTGGTGGAGATTTGAGGTGGAGGATCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCGCACACACTCATTAAGTGGTGGAGATTTGAGGTGGAGGATCTC  500

seq1  CAATGTGGCATCATTTATAAACCACATCTGGGGTAGGATGTAATCTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGGCATCATTTATAAACCACATCTGGGGTAGGATGTAATCTTCAG  550

seq1  TCCTTTGCCATGCATGGCGTGCATGATTAGCCTAAAGGAGGCACTGGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGCCATGCATGGCGTGCATGATTAGCCTAAAGGAGGCACTGGGCA  600

seq1  ACAACACCGAACATTAGATCATGCCTGACATGTTGTGGGCAGGCCAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACCGAACATTAGATCATGCCTGACATGTTGTGGGCAGGCCAAGAG  650

seq1  AAACCAGCCTTCAATCACATGGCCTCATTTAAGCAAAGGTAATAAGGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGCCTTCAATCACATGGCCTCATTTAAGCAAAGGTAATAAGGGAG  700

seq1  ATGTAATTTTGCCATGTGCCTGAAAGGGAAATGAAACAAGCTTGGCAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATTTTGCCATGTGCCTGAAAGGGAAATGAAACAAGCTTGGCAAAC  750

seq1  TCACAGATTGCCTCTATCATAAGAACCAAATGAGATAAAGTACCTGGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGATTGCCTCTATCATAAGAACCAAATGAGATAAAGTACCTGGCAT  800

seq1  ACCGCCTGGCACATAATAGACCTTCAAGAAATGCTATCTATGGCTAGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCCTGGCACATAATAGACCTTCAAGAAATGCTATCTATGGCTAGCAT  850

seq1  GGGGATTCTAATTTGTTAGAATATAATGTGCTTTGACTGGATAGGTATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATTCTAATTTGTTAGAATATAATGTGCTTTGACTGGATAGGTATTT  900

seq1  ATGGATGAGAACATTTTGTTTTGTGTCAACCCATTTGACTATAAGAATAG  950
      ||||||||| |||||||||||||||||||||||||||||||||   ||||
seq2  ATGGATGAG-ACATTTTGTTTTGTGTCAACCCATTTGACTATA--GATAG  947

seq1  CATCACCGCACTGCACATGCATTACCTTTTATTGTTTATGAAGCTCTTAG  1000
      ||||| |||||||||||||||||||||||||||||||||||||||| |||
seq2  CATCA-CGCACTGCACATGCATTACCTTTTATTGTTTATGAAGCTC-TAG  995

seq1  AAATGATTTCAGTTTACTTTT-ATTTTGCCTATA-TTATGAGTAAGGTAC  1048
      ||||||||||||||||||||| |||||||||||| || ||||| ||||||
seq2  AAATGATTTCAGTTTACTTTTAATTTTGCCTATATTTTTGAGT-AGGTAC  1044

seq1  ATAATATTCCT-TCTTTTAATATGAATGGAAATG  1081
      ||||||||||| |||||| ||||| |||||||||
seq2  ATAATATTCCTCTCTTTT-ATATG-ATGGAAATG  1076